Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1043 and DvMF_1044 are separated by 71 nucleotides DvMF_1044 and DvMF_1045 are separated by 41 nucleotides DvMF_1045 and DvMF_1046 are separated by 865 nucleotides
DvMF_1043: DvMF_1043 - Substrate-binding region of ABC-type glycine betaine transport system (RefSeq), at 1,267,853 to 1,268,716
_1043
DvMF_1044: DvMF_1044 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,268,788 to 1,269,630
_1044
DvMF_1045: DvMF_1045 - glycine betaine/L-proline ABC transporter, ATPase subunit (RefSeq), at 1,269,672 to 1,270,865
_1045
DvMF_1046: DvMF_1046 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,271,731 to 1,272,522
_1046
Position (kb)
1269
1270
1271 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1268.779 kb on + strand at 1268.854 kb on + strand at 1269.312 kb on - strand, within DvMF_1044 at 1269.703 kb on + strand at 1269.879 kb on + strand, within DvMF_1045 at 1269.879 kb on + strand, within DvMF_1045 at 1269.972 kb on + strand, within DvMF_1045 at 1270.349 kb on - strand, within DvMF_1045 at 1270.603 kb on - strand, within DvMF_1045 at 1271.109 kb on + strand at 1271.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 1,268,779 + -1.5 1,268,854 + -2.1 1,269,312 - DvMF_1044 0.62 -3.3 1,269,703 + -1.9 1,269,879 + DvMF_1045 0.17 -0.3 1,269,879 + DvMF_1045 0.17 +0.2 1,269,972 + DvMF_1045 0.25 -4.1 1,270,349 - DvMF_1045 0.57 -2.4 1,270,603 - DvMF_1045 0.78 -1.3 1,271,109 + +0.4 1,271,801 + -0.5
Or see this region's nucleotide sequence