Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1045

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1043 and DvMF_1044 are separated by 71 nucleotidesDvMF_1044 and DvMF_1045 are separated by 41 nucleotidesDvMF_1045 and DvMF_1046 are separated by 865 nucleotides DvMF_1043: DvMF_1043 - Substrate-binding region of ABC-type glycine betaine transport system (RefSeq), at 1,267,853 to 1,268,716 _1043 DvMF_1044: DvMF_1044 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,268,788 to 1,269,630 _1044 DvMF_1045: DvMF_1045 - glycine betaine/L-proline ABC transporter, ATPase subunit (RefSeq), at 1,269,672 to 1,270,865 _1045 DvMF_1046: DvMF_1046 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,271,731 to 1,272,522 _1046 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1268.779 kb on + strandat 1268.854 kb on + strandat 1269.312 kb on - strand, within DvMF_1044at 1269.703 kb on + strandat 1269.879 kb on + strand, within DvMF_1045at 1269.879 kb on + strand, within DvMF_1045at 1269.972 kb on + strand, within DvMF_1045at 1270.349 kb on - strand, within DvMF_1045at 1270.603 kb on - strand, within DvMF_1045at 1271.109 kb on + strandat 1271.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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1,268,779 + -1.5
1,268,854 + -2.1
1,269,312 - DvMF_1044 0.62 -3.3
1,269,703 + -1.9
1,269,879 + DvMF_1045 0.17 -0.3
1,269,879 + DvMF_1045 0.17 +0.2
1,269,972 + DvMF_1045 0.25 -4.1
1,270,349 - DvMF_1045 0.57 -2.4
1,270,603 - DvMF_1045 0.78 -1.3
1,271,109 + +0.4
1,271,801 + -0.5

Or see this region's nucleotide sequence