Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0994

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0993 and DvMF_0994 are separated by 209 nucleotidesDvMF_0994 and DvMF_0995 are separated by 144 nucleotides DvMF_0993: DvMF_0993 - transcriptional regulator, Crp/Fnr family (RefSeq), at 1,207,197 to 1,207,886 _0993 DvMF_0994: DvMF_0994 - hypothetical protein (RefSeq), at 1,208,096 to 1,208,602 _0994 DvMF_0995: DvMF_0995 - metal dependent phosphohydrolase (RefSeq), at 1,208,747 to 1,210,003 _0995 Position (kb) 1208 1209Strain fitness (log2 ratio) -2 -1 0 1at 1207.157 kb on + strandat 1207.354 kb on + strand, within DvMF_0993at 1207.520 kb on + strand, within DvMF_0993at 1207.545 kb on + strand, within DvMF_0993at 1207.620 kb on - strand, within DvMF_0993at 1207.799 kb on - strand, within DvMF_0993at 1208.259 kb on + strand, within DvMF_0994at 1208.259 kb on + strand, within DvMF_0994at 1208.561 kb on + strandat 1208.729 kb on - strandat 1209.433 kb on + strand, within DvMF_0995at 1209.583 kb on + strand, within DvMF_0995

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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1,207,157 + -1.0
1,207,354 + DvMF_0993 0.23 -0.8
1,207,520 + DvMF_0993 0.47 -2.1
1,207,545 + DvMF_0993 0.50 +0.8
1,207,620 - DvMF_0993 0.61 -0.7
1,207,799 - DvMF_0993 0.87 -0.3
1,208,259 + DvMF_0994 0.32 -1.5
1,208,259 + DvMF_0994 0.32 -1.3
1,208,561 + -1.6
1,208,729 - -1.2
1,209,433 + DvMF_0995 0.55 -0.7
1,209,583 + DvMF_0995 0.67 -2.6

Or see this region's nucleotide sequence