Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0965

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0964 and DvMF_0965 are separated by 559 nucleotidesDvMF_0965 and DvMF_0966 are separated by 121 nucleotides DvMF_0964: DvMF_0964 - cell division protein MraZ (RefSeq), at 1,169,866 to 1,170,315 _0964 DvMF_0965: DvMF_0965 - pyruvate kinase (RefSeq), at 1,170,875 to 1,172,287 _0965 DvMF_0966: DvMF_0966 - metal dependent phosphohydrolase (RefSeq), at 1,172,409 to 1,173,440 _0966 Position (kb) 1170 1171 1172 1173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1170.035 kb on + strand, within DvMF_0964at 1170.113 kb on + strand, within DvMF_0964at 1170.506 kb on - strandat 1170.507 kb on - strandat 1170.619 kb on - strandat 1170.784 kb on - strandat 1170.825 kb on - strandat 1170.997 kb on - strandat 1171.359 kb on - strand, within DvMF_0965at 1171.548 kb on - strand, within DvMF_0965at 1171.712 kb on + strand, within DvMF_0965at 1172.140 kb on - strand, within DvMF_0965at 1172.397 kb on - strandat 1172.597 kb on - strand, within DvMF_0966at 1172.608 kb on - strand, within DvMF_0966at 1172.647 kb on + strand, within DvMF_0966at 1172.734 kb on + strand, within DvMF_0966at 1172.742 kb on - strand, within DvMF_0966at 1172.982 kb on + strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.053 kb on + strand, within DvMF_0966at 1173.189 kb on - strand, within DvMF_0966at 1173.200 kb on + strand, within DvMF_0966

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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1,170,035 + DvMF_0964 0.38 -0.7
1,170,113 + DvMF_0964 0.55 -2.3
1,170,506 - -1.0
1,170,507 - -0.6
1,170,619 - -3.2
1,170,784 - -0.9
1,170,825 - -1.6
1,170,997 - -0.8
1,171,359 - DvMF_0965 0.34 -2.7
1,171,548 - DvMF_0965 0.48 -1.2
1,171,712 + DvMF_0965 0.59 +0.6
1,172,140 - DvMF_0965 0.90 -4.3
1,172,397 - -1.8
1,172,597 - DvMF_0966 0.18 -1.0
1,172,608 - DvMF_0966 0.19 +0.0
1,172,647 + DvMF_0966 0.23 -1.2
1,172,734 + DvMF_0966 0.31 -1.0
1,172,742 - DvMF_0966 0.32 -1.2
1,172,982 + DvMF_0966 0.56 -0.8
1,172,990 - DvMF_0966 0.56 -1.5
1,172,990 - DvMF_0966 0.56 -1.6
1,173,036 - DvMF_0966 0.61 -2.3
1,173,036 - DvMF_0966 0.61 -0.5
1,173,053 + DvMF_0966 0.62 -0.6
1,173,189 - DvMF_0966 0.76 -1.7
1,173,200 + DvMF_0966 0.77 -0.2

Or see this region's nucleotide sequence