Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0888 and DvMF_0889 overlap by 11 nucleotides DvMF_0889 and DvMF_0890 overlap by 4 nucleotides DvMF_0890 and DvMF_0891 overlap by 13 nucleotides DvMF_0891 and DvMF_0892 are separated by 540 nucleotides
DvMF_0888: DvMF_0888 - 60 kDa inner membrane insertion protein (RefSeq), at 1,072,500 to 1,074,119
_0888
DvMF_0889: DvMF_0889 - protein of unknown function DUF37 (RefSeq), at 1,074,109 to 1,074,426
_0889
DvMF_0890: DvMF_0890 - ribonuclease P protein component (RefSeq), at 1,074,423 to 1,074,965
_0890
DvMF_0891: DvMF_0891 - ribosomal protein L34 (RefSeq), at 1,074,953 to 1,075,090
_0891
DvMF_0892: DvMF_0892 - hypothetical protein (RefSeq), at 1,075,631 to 1,076,659
_0892
Position (kb) 1074
1075
1076 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1075.453 kb on + strand at 1075.643 kb on + strand at 1075.920 kb on + strand, within DvMF_0892 at 1075.923 kb on - strand, within DvMF_0892 at 1075.923 kb on - strand, within DvMF_0892 at 1075.928 kb on - strand, within DvMF_0892 at 1075.953 kb on - strand, within DvMF_0892
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 1,075,453 + -1.8 1,075,643 + -0.8 1,075,920 + DvMF_0892 0.28 -2.4 1,075,923 - DvMF_0892 0.28 -0.6 1,075,923 - DvMF_0892 0.28 -2.4 1,075,928 - DvMF_0892 0.29 -1.1 1,075,953 - DvMF_0892 0.31 -3.4
Or see this region's nucleotide sequence