Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0665

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0664 and DvMF_0665 are separated by 17 nucleotidesDvMF_0665 and DvMF_0666 overlap by 4 nucleotides DvMF_0664: DvMF_0664 - Orn/DAP/Arg decarboxylase 2 (RefSeq), at 801,335 to 802,759 _0664 DvMF_0665: DvMF_0665 - protein of unknown function DUF201 (RefSeq), at 802,777 to 803,937 _0665 DvMF_0666: DvMF_0666 - hypothetical protein (RefSeq), at 803,934 to 805,100 _0666 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1at 801.953 kb on + strand, within DvMF_0664at 802.219 kb on + strand, within DvMF_0664at 802.628 kb on - strandat 802.973 kb on - strand, within DvMF_0665at 803.172 kb on + strand, within DvMF_0665at 803.180 kb on - strand, within DvMF_0665at 803.180 kb on - strand, within DvMF_0665at 803.197 kb on - strand, within DvMF_0665at 803.522 kb on + strand, within DvMF_0665at 803.530 kb on - strand, within DvMF_0665at 803.796 kb on - strand, within DvMF_0665at 803.904 kb on - strandat 804.009 kb on - strandat 804.072 kb on - strand, within DvMF_0666at 804.870 kb on + strand, within DvMF_0666

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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801,953 + DvMF_0664 0.43 +0.6
802,219 + DvMF_0664 0.62 -1.0
802,628 - -0.5
802,973 - DvMF_0665 0.17 -0.2
803,172 + DvMF_0665 0.34 +0.7
803,180 - DvMF_0665 0.35 -0.9
803,180 - DvMF_0665 0.35 +1.0
803,197 - DvMF_0665 0.36 -0.2
803,522 + DvMF_0665 0.64 -2.6
803,530 - DvMF_0665 0.65 -0.4
803,796 - DvMF_0665 0.88 -0.4
803,904 - -1.3
804,009 - -0.0
804,072 - DvMF_0666 0.12 -0.9
804,870 + DvMF_0666 0.80 -1.6

Or see this region's nucleotide sequence