Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0534

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0533 and DvMF_0534 are separated by 6 nucleotidesDvMF_0534 and DvMF_0535 are separated by 9 nucleotidesDvMF_0535 and DvMF_0536 overlap by 8 nucleotides DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360 _0533 DvMF_0534: DvMF_0534 - caa(3)-type oxidase, subunit IV (RefSeq), at 630,367 to 630,657 _0534 DvMF_0535: DvMF_0535 - cytochrome c oxidase subunit III (RefSeq), at 630,667 to 631,263 _0535 DvMF_0536: DvMF_0536 - cytochrome c oxidase, subunit I (RefSeq), at 631,256 to 632,881 _0536 Position (kb) 630 631Strain fitness (log2 ratio) -1 0 1at 629.648 kb on + strand, within DvMF_0533at 630.123 kb on + strand, within DvMF_0533at 630.444 kb on + strand, within DvMF_0534at 630.590 kb on - strand, within DvMF_0534at 630.596 kb on + strand, within DvMF_0534at 630.730 kb on - strand, within DvMF_0535at 630.815 kb on - strand, within DvMF_0535at 630.828 kb on + strand, within DvMF_0535at 631.174 kb on - strand, within DvMF_0535at 631.353 kb on - strandat 631.629 kb on + strand, within DvMF_0536

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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629,648 + DvMF_0533 0.41 -1.1
630,123 + DvMF_0533 0.80 -1.4
630,444 + DvMF_0534 0.26 -1.1
630,590 - DvMF_0534 0.77 -1.4
630,596 + DvMF_0534 0.79 -0.3
630,730 - DvMF_0535 0.11 -1.1
630,815 - DvMF_0535 0.25 +0.1
630,828 + DvMF_0535 0.27 -1.0
631,174 - DvMF_0535 0.85 -0.4
631,353 - -1.5
631,629 + DvMF_0536 0.23 +0.5

Or see this region's nucleotide sequence