Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0422 and DvMF_0423 are separated by 4 nucleotides DvMF_0423 and DvMF_0424 are separated by 247 nucleotides DvMF_0424 and DvMF_0425 are separated by 379 nucleotides DvMF_0425 and DvMF_0426 are separated by 9 nucleotides
DvMF_0422: DvMF_0422 - PTS system sorbose subfamily IIB component (RefSeq), at 497,493 to 497,957
_0422
DvMF_0423: DvMF_0423 - PTS system fructose subfamily IIA component (RefSeq), at 497,962 to 498,480
_0423
DvMF_0424: DvMF_0424 - hypothetical protein (RefSeq), at 498,728 to 499,609
_0424
DvMF_0425: DvMF_0425 - putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 499,989 to 500,438
_0425
DvMF_0426: DvMF_0426 - sigma 54 modulation protein/ribosomal protein S30EA (RefSeq), at 500,448 to 500,993
_0426
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.773 kb on - strand, within DvMF_0422 at 498.096 kb on + strand, within DvMF_0423 at 498.096 kb on + strand, within DvMF_0423 at 498.270 kb on + strand, within DvMF_0423 at 498.286 kb on + strand, within DvMF_0423 at 498.418 kb on - strand, within DvMF_0423 at 498.438 kb on - strand at 498.438 kb on - strand at 498.455 kb on + strand at 499.120 kb on - strand, within DvMF_0424 at 499.217 kb on + strand, within DvMF_0424 at 499.422 kb on - strand, within DvMF_0424 at 499.450 kb on - strand, within DvMF_0424 at 499.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 497,773 - DvMF_0422 0.60 -1.2 498,096 + DvMF_0423 0.26 +0.9 498,096 + DvMF_0423 0.26 +0.8 498,270 + DvMF_0423 0.59 +3.2 498,286 + DvMF_0423 0.62 -0.5 498,418 - DvMF_0423 0.88 +1.2 498,438 - +0.2 498,438 - +0.4 498,455 + -0.4 499,120 - DvMF_0424 0.44 -3.2 499,217 + DvMF_0424 0.55 -2.1 499,422 - DvMF_0424 0.79 -1.7 499,450 - DvMF_0424 0.82 -1.8 499,705 + -2.5
Or see this region's nucleotide sequence