Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0308

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslU and DvMF_0308 are separated by 268 nucleotidesDvMF_0308 and rpsA are separated by 272 nucleotides DvMF_0307: hslU - ATP-dependent protease ATP-binding subunit HslU (RefSeq), at 353,685 to 355,136 hslU DvMF_0308: DvMF_0308 - protease Do (RefSeq), at 355,405 to 356,850 _0308 DvMF_0309: rpsA - 30S ribosomal protein S1 (RefSeq), at 357,123 to 358,817 rpsA Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1at 355.129 kb on - strandat 355.217 kb on + strandat 355.293 kb on - strandat 355.524 kb on - strandat 355.658 kb on - strand, within DvMF_0308at 355.770 kb on + strand, within DvMF_0308at 355.772 kb on - strand, within DvMF_0308at 355.778 kb on - strand, within DvMF_0308at 355.778 kb on - strand, within DvMF_0308at 355.778 kb on - strand, within DvMF_0308at 355.797 kb on - strand, within DvMF_0308at 355.817 kb on - strand, within DvMF_0308at 355.852 kb on - strand, within DvMF_0308at 356.083 kb on - strand, within DvMF_0308at 356.124 kb on + strand, within DvMF_0308at 356.280 kb on - strand, within DvMF_0308at 357.006 kb on - strandat 357.011 kb on - strandat 357.308 kb on + strand, within rpsAat 357.316 kb on - strand, within rpsAat 357.431 kb on - strand, within rpsAat 357.433 kb on + strand, within rpsAat 357.447 kb on - strand, within rpsAat 357.482 kb on - strand, within rpsAat 357.629 kb on - strand, within rpsAat 357.689 kb on - strand, within rpsA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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355,129 - -2.4
355,217 + +0.3
355,293 - -0.1
355,524 - -3.1
355,658 - DvMF_0308 0.17 -1.6
355,770 + DvMF_0308 0.25 -0.1
355,772 - DvMF_0308 0.25 -2.3
355,778 - DvMF_0308 0.26 -2.0
355,778 - DvMF_0308 0.26 -3.3
355,778 - DvMF_0308 0.26 -1.7
355,797 - DvMF_0308 0.27 -3.2
355,817 - DvMF_0308 0.28 -1.2
355,852 - DvMF_0308 0.31 -3.0
356,083 - DvMF_0308 0.47 -2.4
356,124 + DvMF_0308 0.50 -1.6
356,280 - DvMF_0308 0.61 -3.1
357,006 - -3.2
357,011 - +1.6
357,308 + rpsA DvMF_0309 0.11 -2.3
357,316 - rpsA DvMF_0309 0.11 -0.6
357,431 - rpsA DvMF_0309 0.18 -2.9
357,433 + rpsA DvMF_0309 0.18 +0.5
357,447 - rpsA DvMF_0309 0.19 -0.5
357,482 - rpsA DvMF_0309 0.21 -0.1
357,629 - rpsA DvMF_0309 0.30 -1.5
357,689 - rpsA DvMF_0309 0.33 +1.6

Or see this region's nucleotide sequence