Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0226

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0224 and DvMF_0225 are separated by 16 nucleotidesDvMF_0225 and DvMF_0226 are separated by 315 nucleotidesDvMF_0226 and DvMF_0227 are separated by 242 nucleotides DvMF_0224: DvMF_0224 - glycine dehydrogenase subunit 1 (RefSeq), at 251,248 to 252,579 _0224 DvMF_0225: DvMF_0225 - glycine cleavage system protein H (RefSeq), at 252,596 to 252,979 _0225 DvMF_0226: DvMF_0226 - response regulator receiver protein (RefSeq), at 253,295 to 253,708 _0226 DvMF_0227: DvMF_0227 - phosphoglucomutase (RefSeq), at 253,951 to 255,600 _0227 Position (kb) 253 254Strain fitness (log2 ratio) -2 -1 0 1at 252.302 kb on + strand, within DvMF_0224at 252.302 kb on + strand, within DvMF_0224at 252.358 kb on + strand, within DvMF_0224at 252.550 kb on - strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.560 kb on - strandat 252.679 kb on + strand, within DvMF_0225at 252.701 kb on - strand, within DvMF_0225at 252.995 kb on + strandat 253.061 kb on + strandat 253.082 kb on - strandat 253.112 kb on - strandat 253.152 kb on - strandat 253.252 kb on + strandat 253.666 kb on + strand, within DvMF_0226at 253.833 kb on + strandat 253.908 kb on + strandat 253.995 kb on - strandat 254.152 kb on - strand, within DvMF_0227at 254.268 kb on - strand, within DvMF_0227at 254.305 kb on - strand, within DvMF_0227at 254.388 kb on - strand, within DvMF_0227at 254.476 kb on + strand, within DvMF_0227at 254.484 kb on - strand, within DvMF_0227

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
252,302 + DvMF_0224 0.79 +0.1
252,302 + DvMF_0224 0.79 -0.2
252,358 + DvMF_0224 0.83 -0.8
252,550 - -2.4
252,552 + +0.2
252,552 + +0.9
252,552 + -0.2
252,552 + +0.3
252,560 - -1.2
252,679 + DvMF_0225 0.22 -0.7
252,701 - DvMF_0225 0.27 -0.5
252,995 + -0.5
253,061 + -1.4
253,082 - +0.1
253,112 - -1.0
253,152 - -2.0
253,252 + -0.4
253,666 + DvMF_0226 0.90 -2.0
253,833 + -0.8
253,908 + -0.8
253,995 - -0.5
254,152 - DvMF_0227 0.12 +0.2
254,268 - DvMF_0227 0.19 -0.7
254,305 - DvMF_0227 0.21 +0.3
254,388 - DvMF_0227 0.26 +0.1
254,476 + DvMF_0227 0.32 +0.3
254,484 - DvMF_0227 0.32 -1.0

Or see this region's nucleotide sequence