Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2176

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2174 and Dshi_2175 overlap by 4 nucleotidesDshi_2175 and Dshi_2176 are separated by 12 nucleotidesDshi_2176 and Dshi_2177 overlap by 10 nucleotides Dshi_2174: Dshi_2174 - phage major capsid protein, HK97 family (RefSeq), at 2,301,398 to 2,302,615 _2174 Dshi_2175: Dshi_2175 - phage prohead protease, HK97 family (RefSeq), at 2,302,612 to 2,303,229 _2175 Dshi_2176: Dshi_2176 - hypothetical protein (RefSeq), at 2,303,242 to 2,303,508 _2176 Dshi_2177: Dshi_2177 - phage portal protein, HK97 family (RefSeq), at 2,303,499 to 2,304,689 _2177 Position (kb) 2303 2304Strain fitness (log2 ratio) -2 -1 0 1at 2302.314 kb on - strand, within Dshi_2174at 2302.389 kb on + strand, within Dshi_2174at 2302.434 kb on + strand, within Dshi_2174at 2302.442 kb on - strand, within Dshi_2174at 2302.442 kb on - strand, within Dshi_2174at 2302.442 kb on - strand, within Dshi_2174at 2302.484 kb on + strand, within Dshi_2174at 2302.492 kb on - strand, within Dshi_2174at 2302.492 kb on - strand, within Dshi_2174at 2302.527 kb on - strandat 2302.599 kb on - strandat 2302.651 kb on - strandat 2302.670 kb on - strandat 2302.673 kb on + strandat 2302.777 kb on - strand, within Dshi_2175at 2302.943 kb on + strand, within Dshi_2175at 2302.981 kb on + strand, within Dshi_2175at 2302.986 kb on + strand, within Dshi_2175at 2303.106 kb on + strand, within Dshi_2175at 2303.114 kb on - strand, within Dshi_2175at 2303.118 kb on - strand, within Dshi_2175at 2303.160 kb on - strand, within Dshi_2175at 2303.195 kb on + strandat 2303.293 kb on - strand, within Dshi_2176at 2303.439 kb on - strand, within Dshi_2176at 2303.477 kb on + strand, within Dshi_2176at 2303.498 kb on + strandat 2303.498 kb on + strandat 2303.549 kb on - strandat 2303.588 kb on - strandat 2303.618 kb on - strand, within Dshi_2177at 2303.669 kb on + strand, within Dshi_2177at 2303.706 kb on + strand, within Dshi_2177at 2303.721 kb on - strand, within Dshi_2177at 2303.831 kb on + strand, within Dshi_2177at 2303.890 kb on + strand, within Dshi_2177at 2303.973 kb on - strand, within Dshi_2177at 2304.053 kb on - strand, within Dshi_2177at 2304.064 kb on - strand, within Dshi_2177at 2304.151 kb on - strand, within Dshi_2177at 2304.206 kb on - strand, within Dshi_2177at 2304.214 kb on + strand, within Dshi_2177at 2304.221 kb on + strand, within Dshi_2177at 2304.229 kb on - strand, within Dshi_2177at 2304.476 kb on - strand, within Dshi_2177

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,302,314 - Dshi_2174 0.75 +0.9
2,302,389 + Dshi_2174 0.81 -0.4
2,302,434 + Dshi_2174 0.85 -1.8
2,302,442 - Dshi_2174 0.86 +0.4
2,302,442 - Dshi_2174 0.86 -0.2
2,302,442 - Dshi_2174 0.86 +0.0
2,302,484 + Dshi_2174 0.89 +0.2
2,302,492 - Dshi_2174 0.90 -0.4
2,302,492 - Dshi_2174 0.90 +0.2
2,302,527 - -0.5
2,302,599 - -0.2
2,302,651 - -0.7
2,302,670 - +0.1
2,302,673 + -1.1
2,302,777 - Dshi_2175 0.27 +0.8
2,302,943 + Dshi_2175 0.54 -0.8
2,302,981 + Dshi_2175 0.60 -0.3
2,302,986 + Dshi_2175 0.61 -0.2
2,303,106 + Dshi_2175 0.80 +1.5
2,303,114 - Dshi_2175 0.81 -0.3
2,303,118 - Dshi_2175 0.82 -1.6
2,303,160 - Dshi_2175 0.89 -0.2
2,303,195 + +0.8
2,303,293 - Dshi_2176 0.19 -0.3
2,303,439 - Dshi_2176 0.74 -0.7
2,303,477 + Dshi_2176 0.88 +0.1
2,303,498 + -0.2
2,303,498 + -0.0
2,303,549 - -0.2
2,303,588 - -0.8
2,303,618 - Dshi_2177 0.10 -0.5
2,303,669 + Dshi_2177 0.14 -0.6
2,303,706 + Dshi_2177 0.17 +0.2
2,303,721 - Dshi_2177 0.19 -1.2
2,303,831 + Dshi_2177 0.28 -0.8
2,303,890 + Dshi_2177 0.33 +0.8
2,303,973 - Dshi_2177 0.40 -0.4
2,304,053 - Dshi_2177 0.47 +1.3
2,304,064 - Dshi_2177 0.47 -1.0
2,304,151 - Dshi_2177 0.55 -0.6
2,304,206 - Dshi_2177 0.59 -0.6
2,304,214 + Dshi_2177 0.60 -0.3
2,304,221 + Dshi_2177 0.61 +0.3
2,304,229 - Dshi_2177 0.61 +1.2
2,304,476 - Dshi_2177 0.82 +0.2

Or see this region's nucleotide sequence