Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1715

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1714 and Dshi_1715 are separated by 185 nucleotidesDshi_1715 and Dshi_1716 overlap by 4 nucleotidesDshi_1716 and Dshi_1717 are separated by 200 nucleotides Dshi_1714: Dshi_1714 - ABC transporter related (RefSeq), at 1,781,528 to 1,783,372 _1714 Dshi_1715: Dshi_1715 - sulfotransferase (RefSeq), at 1,783,558 to 1,784,403 _1715 Dshi_1716: Dshi_1716 - hypothetical protein (RefSeq), at 1,784,400 to 1,784,858 _1716 Dshi_1717: Dshi_1717 - hypothetical protein (RefSeq), at 1,785,059 to 1,785,622 _1717 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -1 0 1at 1782.671 kb on + strand, within Dshi_1714at 1782.872 kb on - strand, within Dshi_1714at 1783.011 kb on - strand, within Dshi_1714at 1783.068 kb on - strand, within Dshi_1714at 1783.280 kb on - strandat 1783.286 kb on - strandat 1783.553 kb on - strandat 1783.580 kb on - strandat 1783.625 kb on - strandat 1783.731 kb on + strand, within Dshi_1715at 1783.877 kb on + strand, within Dshi_1715at 1784.158 kb on - strand, within Dshi_1715at 1784.276 kb on - strand, within Dshi_1715at 1784.365 kb on + strandat 1784.379 kb on - strandat 1784.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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1,782,671 + Dshi_1714 0.62 -0.1
1,782,872 - Dshi_1714 0.73 +0.2
1,783,011 - Dshi_1714 0.80 +0.6
1,783,068 - Dshi_1714 0.83 -0.1
1,783,280 - +0.7
1,783,286 - -0.1
1,783,553 - -0.4
1,783,580 - -0.7
1,783,625 - -0.3
1,783,731 + Dshi_1715 0.20 -0.3
1,783,877 + Dshi_1715 0.38 -0.2
1,784,158 - Dshi_1715 0.71 +1.1
1,784,276 - Dshi_1715 0.85 +0.3
1,784,365 + +0.3
1,784,379 - -0.3
1,784,379 - -0.5

Or see this region's nucleotide sequence