Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1590 and Dshi_1591 are separated by 90 nucleotides Dshi_1591 and Dshi_1592 are separated by 37 nucleotides Dshi_1592 and Dshi_1593 are separated by 35 nucleotides
Dshi_1590: Dshi_1590 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,656,339 to 1,657,472
_1590
Dshi_1591: Dshi_1591 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,657,563 to 1,658,480
_1591
Dshi_1592: Dshi_1592 - hypothetical protein (RefSeq), at 1,658,518 to 1,659,390
_1592
Dshi_1593: Dshi_1593 - Homoserine O-succinyltransferase (RefSeq), at 1,659,426 to 1,660,343
_1593
Position (kb)
1657
1658
1659 Strain fitness (log2 ratio)
-1
0
1 at 1656.566 kb on - strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.633 kb on + strand, within Dshi_1590 at 1656.802 kb on - strand, within Dshi_1590 at 1657.072 kb on - strand, within Dshi_1590 at 1657.337 kb on + strand, within Dshi_1590 at 1657.371 kb on + strand at 1657.440 kb on - strand at 1657.480 kb on + strand at 1657.486 kb on + strand at 1657.557 kb on + strand at 1657.565 kb on - strand at 1657.596 kb on + strand at 1657.707 kb on - strand, within Dshi_1591 at 1658.098 kb on - strand, within Dshi_1591 at 1658.098 kb on - strand, within Dshi_1591 at 1658.179 kb on - strand, within Dshi_1591 at 1658.208 kb on + strand, within Dshi_1591 at 1658.216 kb on - strand, within Dshi_1591 at 1658.221 kb on - strand, within Dshi_1591 at 1658.284 kb on + strand, within Dshi_1591 at 1658.292 kb on - strand, within Dshi_1591 at 1658.361 kb on - strand, within Dshi_1591 at 1658.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,656,566 - Dshi_1590 0.20 +0.6 1,656,623 + Dshi_1590 0.25 +0.1 1,656,623 + Dshi_1590 0.25 +0.3 1,656,623 + Dshi_1590 0.25 +0.5 1,656,633 + Dshi_1590 0.26 +0.6 1,656,802 - Dshi_1590 0.41 +1.2 1,657,072 - Dshi_1590 0.65 -0.1 1,657,337 + Dshi_1590 0.88 +0.1 1,657,371 + +0.6 1,657,440 - +0.2 1,657,480 + -0.1 1,657,486 + -0.0 1,657,557 + +0.0 1,657,565 - +0.2 1,657,596 + +0.2 1,657,707 - Dshi_1591 0.16 -0.9 1,658,098 - Dshi_1591 0.58 -1.3 1,658,098 - Dshi_1591 0.58 -0.3 1,658,179 - Dshi_1591 0.67 -0.1 1,658,208 + Dshi_1591 0.70 +0.4 1,658,216 - Dshi_1591 0.71 -0.3 1,658,221 - Dshi_1591 0.72 -0.5 1,658,284 + Dshi_1591 0.79 -0.8 1,658,292 - Dshi_1591 0.79 +0.2 1,658,361 - Dshi_1591 0.87 -0.2 1,658,410 + +0.1
Or see this region's nucleotide sequence