Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0794 and Dshi_0795 are separated by 1 nucleotides Dshi_0795 and Dshi_0796 are separated by 190 nucleotides Dshi_0796 and Dshi_0797 overlap by 4 nucleotides Dshi_0797 and Dshi_0798 overlap by 11 nucleotides
Dshi_0794: Dshi_0794 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 801,568 to 802,155
_0794
Dshi_0795: Dshi_0795 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq), at 802,157 to 802,795
_0795
Dshi_0796: Dshi_0796 - ornithine carbamoyltransferase (RefSeq), at 802,986 to 803,912
_0796
Dshi_0797: Dshi_0797 - GCN5-related N-acetyltransferase (RefSeq), at 803,909 to 804,442
_0797
Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613
_0798
Position (kb) 802
803
804 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 802.803 kb on + strand at 802.826 kb on - strand at 802.878 kb on + strand at 803.137 kb on - strand, within Dshi_0796 at 803.385 kb on - strand, within Dshi_0796 at 803.387 kb on + strand, within Dshi_0796 at 803.410 kb on + strand, within Dshi_0796 at 803.502 kb on - strand, within Dshi_0796 at 803.601 kb on + strand, within Dshi_0796 at 803.781 kb on + strand, within Dshi_0796 at 803.809 kb on + strand, within Dshi_0796 at 803.874 kb on + strand at 803.953 kb on - strand at 804.048 kb on + strand, within Dshi_0797 at 804.095 kb on - strand, within Dshi_0797 at 804.220 kb on - strand, within Dshi_0797 at 804.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 802,803 + -2.8 802,826 - +0.6 802,878 + +0.1 803,137 - Dshi_0796 0.16 -1.4 803,385 - Dshi_0796 0.43 -3.9 803,387 + Dshi_0796 0.43 -2.5 803,410 + Dshi_0796 0.46 -2.3 803,502 - Dshi_0796 0.56 -4.3 803,601 + Dshi_0796 0.66 -3.2 803,781 + Dshi_0796 0.86 -3.5 803,809 + Dshi_0796 0.89 -4.4 803,874 + -1.2 803,953 - -0.6 804,048 + Dshi_0797 0.26 -0.5 804,095 - Dshi_0797 0.35 +1.5 804,220 - Dshi_0797 0.58 -0.3 804,447 - +0.0
Or see this region's nucleotide sequence