Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0115

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0114 and Dshi_0115 overlap by 4 nucleotidesDshi_0115 and Dshi_0116 are separated by 290 nucleotides Dshi_0114: Dshi_0114 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 112,628 to 113,833 _0114 Dshi_0115: Dshi_0115 - putative methyltransferase (RefSeq), at 113,830 to 114,387 _0115 Dshi_0116: Dshi_0116 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 114,678 to 115,730 _0116 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1at 113.843 kb on - strandat 113.885 kb on - strandat 113.995 kb on + strand, within Dshi_0115at 114.049 kb on + strand, within Dshi_0115at 114.102 kb on - strand, within Dshi_0115at 114.135 kb on - strand, within Dshi_0115at 114.210 kb on + strand, within Dshi_0115at 114.252 kb on + strand, within Dshi_0115at 114.470 kb on - strandat 114.544 kb on + strandat 114.572 kb on + strandat 114.604 kb on + strandat 114.713 kb on - strandat 114.741 kb on - strandat 114.797 kb on - strand, within Dshi_0116at 114.870 kb on + strand, within Dshi_0116at 115.080 kb on - strand, within Dshi_0116at 115.164 kb on - strand, within Dshi_0116at 115.223 kb on + strand, within Dshi_0116at 115.250 kb on - strand, within Dshi_0116at 115.288 kb on - strand, within Dshi_0116at 115.356 kb on - strand, within Dshi_0116at 115.372 kb on - strand, within Dshi_0116

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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113,843 - -1.7
113,885 - +0.5
113,995 + Dshi_0115 0.30 +0.2
114,049 + Dshi_0115 0.39 -0.1
114,102 - Dshi_0115 0.49 +0.2
114,135 - Dshi_0115 0.55 +0.8
114,210 + Dshi_0115 0.68 +1.0
114,252 + Dshi_0115 0.76 -0.6
114,470 - +0.4
114,544 + +1.7
114,572 + +0.4
114,604 + +0.3
114,713 - +0.0
114,741 - -0.6
114,797 - Dshi_0116 0.11 +0.0
114,870 + Dshi_0116 0.18 -2.3
115,080 - Dshi_0116 0.38 -0.5
115,164 - Dshi_0116 0.46 -0.8
115,223 + Dshi_0116 0.52 -0.0
115,250 - Dshi_0116 0.54 -0.0
115,288 - Dshi_0116 0.58 -0.0
115,356 - Dshi_0116 0.64 -0.8
115,372 - Dshi_0116 0.66 -0.7

Or see this region's nucleotide sequence