Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2522

Experiment: MoYLS4 with 2,2' Dipyridyl 75uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroK-2 and DVU2522 overlap by 8 nucleotidesDVU2522 and DVU2523 are separated by 29 nucleotidesDVU2523 and DVU2524 are separated by 435 nucleotides DVU2521: aroK-2 - shikimate kinase (TIGR), at 2,633,489 to 2,634,031 aroK-2 DVU2522: DVU2522 - hypothetical protein (TIGR), at 2,634,024 to 2,634,626 DVU2522 DVU2523: DVU2523 - lipoprotein, putative (TIGR), at 2,634,656 to 2,635,132 DVU2523 DVU2524: DVU2524 - cytochrome c3, putative (TIGR), at 2,635,568 to 2,636,065 DVU2524 Position (kb) 2634 2635Strain fitness (log2 ratio) -2 -1 0 1at 2633.070 kb on + strandat 2633.073 kb on + strandat 2633.180 kb on + strandat 2633.225 kb on - strandat 2633.246 kb on - strandat 2633.281 kb on - strandat 2633.355 kb on - strandat 2633.401 kb on + strandat 2633.437 kb on - strandat 2634.073 kb on - strandat 2634.128 kb on + strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.271 kb on - strand, within DVU2522at 2634.278 kb on + strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.322 kb on - strand, within DVU2522at 2634.342 kb on - strand, within DVU2522at 2634.371 kb on + strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.507 kb on - strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.530 kb on + strand, within DVU2522at 2634.579 kb on + strandat 2634.587 kb on - strandat 2634.602 kb on + strandat 2634.610 kb on - strandat 2634.782 kb on + strand, within DVU2523at 2634.800 kb on - strand, within DVU2523at 2634.825 kb on - strand, within DVU2523at 2634.907 kb on - strand, within DVU2523at 2634.971 kb on - strand, within DVU2523at 2635.198 kb on - strandat 2635.198 kb on - strandat 2635.385 kb on - strandat 2635.455 kb on - strandat 2635.468 kb on - strandat 2635.523 kb on - strandat 2635.532 kb on - strandat 2635.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2,2' Dipyridyl 75uM
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2,633,070 + -0.4
2,633,073 + -0.0
2,633,180 + +0.5
2,633,225 - -1.7
2,633,246 - +0.3
2,633,281 - +1.4
2,633,355 - -0.2
2,633,401 + -1.4
2,633,437 - +0.5
2,634,073 - -0.2
2,634,128 + DVU2522 0.17 -1.5
2,634,243 - DVU2522 0.36 -0.6
2,634,243 - DVU2522 0.36 -0.9
2,634,271 - DVU2522 0.41 +0.0
2,634,278 + DVU2522 0.42 +0.5
2,634,286 - DVU2522 0.43 -1.3
2,634,286 - DVU2522 0.43 -2.1
2,634,322 - DVU2522 0.49 -1.3
2,634,342 - DVU2522 0.53 -1.0
2,634,371 + DVU2522 0.58 -1.7
2,634,468 - DVU2522 0.74 +0.6
2,634,468 - DVU2522 0.74 -0.2
2,634,507 - DVU2522 0.80 -1.8
2,634,509 + DVU2522 0.80 -0.8
2,634,509 + DVU2522 0.80 -0.1
2,634,517 - DVU2522 0.82 -0.7
2,634,517 - DVU2522 0.82 -0.5
2,634,530 + DVU2522 0.84 +0.3
2,634,579 + -0.1
2,634,587 - +0.3
2,634,602 + -0.5
2,634,610 - +0.7
2,634,782 + DVU2523 0.26 -1.4
2,634,800 - DVU2523 0.30 -0.3
2,634,825 - DVU2523 0.35 -0.2
2,634,907 - DVU2523 0.53 -1.4
2,634,971 - DVU2523 0.66 -0.9
2,635,198 - -1.2
2,635,198 - -1.7
2,635,385 - -0.0
2,635,455 - -0.0
2,635,468 - -0.8
2,635,523 - +0.0
2,635,532 - +0.6
2,635,581 + -2.1

Or see this region's nucleotide sequence