Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1086

Experiment: MoYLS4 with 2,2' Dipyridyl 75uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoU and DVU1086 are separated by 427 nucleotidesDVU1086 and DVU1087 are separated by 3 nucleotides DVU1085: phoU - phosphate transport system protein PhoU (TIGR), at 1,188,620 to 1,189,285 phoU DVU1086: DVU1086 - hypothetical protein (TIGR), at 1,189,713 to 1,190,192 DVU1086 DVU1087: DVU1087 - conserved hypothetical protein (TIGR), at 1,190,196 to 1,191,176 DVU1087 Position (kb) 1189 1190 1191Strain fitness (log2 ratio) -1 0 1at 1188.716 kb on + strand, within phoUat 1188.807 kb on + strand, within phoUat 1188.867 kb on + strand, within phoUat 1188.875 kb on - strand, within phoUat 1188.980 kb on - strand, within phoUat 1188.981 kb on + strand, within phoUat 1189.016 kb on + strand, within phoUat 1189.024 kb on - strand, within phoUat 1189.193 kb on - strand, within phoUat 1189.280 kb on + strandat 1189.336 kb on - strandat 1189.390 kb on - strandat 1189.514 kb on - strandat 1189.627 kb on + strandat 1189.627 kb on + strandat 1189.653 kb on + strandat 1189.789 kb on + strand, within DVU1086at 1189.848 kb on + strand, within DVU1086at 1189.911 kb on + strand, within DVU1086at 1189.963 kb on + strand, within DVU1086at 1189.966 kb on - strand, within DVU1086at 1190.011 kb on - strand, within DVU1086at 1190.063 kb on - strand, within DVU1086at 1190.084 kb on + strand, within DVU1086at 1190.084 kb on + strand, within DVU1086at 1190.106 kb on + strand, within DVU1086at 1190.186 kb on + strandat 1190.215 kb on - strandat 1190.537 kb on - strand, within DVU1087at 1190.640 kb on + strand, within DVU1087at 1190.768 kb on - strand, within DVU1087at 1190.773 kb on - strand, within DVU1087at 1190.915 kb on + strand, within DVU1087at 1190.938 kb on - strand, within DVU1087at 1190.985 kb on - strand, within DVU1087at 1191.028 kb on - strand, within DVU1087at 1191.083 kb on + strandat 1191.083 kb on + strandat 1191.109 kb on + strandat 1191.112 kb on - strandat 1191.117 kb on - strandat 1191.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2,2' Dipyridyl 75uM
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1,188,716 + phoU DVU1085 0.14 +0.1
1,188,807 + phoU DVU1085 0.28 -0.8
1,188,867 + phoU DVU1085 0.37 -0.2
1,188,875 - phoU DVU1085 0.38 +0.4
1,188,980 - phoU DVU1085 0.54 +0.4
1,188,981 + phoU DVU1085 0.54 +0.3
1,189,016 + phoU DVU1085 0.59 +0.6
1,189,024 - phoU DVU1085 0.61 +0.1
1,189,193 - phoU DVU1085 0.86 +0.2
1,189,280 + +0.6
1,189,336 - -0.3
1,189,390 - -0.1
1,189,514 - -0.2
1,189,627 + +0.8
1,189,627 + -0.9
1,189,653 + +0.1
1,189,789 + DVU1086 0.16 -1.0
1,189,848 + DVU1086 0.28 -0.6
1,189,911 + DVU1086 0.41 -0.8
1,189,963 + DVU1086 0.52 -0.3
1,189,966 - DVU1086 0.53 -0.5
1,190,011 - DVU1086 0.62 -0.7
1,190,063 - DVU1086 0.73 -1.6
1,190,084 + DVU1086 0.77 +0.0
1,190,084 + DVU1086 0.77 -0.6
1,190,106 + DVU1086 0.82 -0.2
1,190,186 + -1.1
1,190,215 - -0.4
1,190,537 - DVU1087 0.35 +0.3
1,190,640 + DVU1087 0.45 -0.1
1,190,768 - DVU1087 0.58 +0.7
1,190,773 - DVU1087 0.59 +0.2
1,190,915 + DVU1087 0.73 +0.1
1,190,938 - DVU1087 0.76 +0.3
1,190,985 - DVU1087 0.80 -0.2
1,191,028 - DVU1087 0.85 +0.4
1,191,083 + +0.5
1,191,083 + -0.9
1,191,109 + +0.2
1,191,112 - -0.7
1,191,117 - +0.8
1,191,117 - -0.1

Or see this region's nucleotide sequence