Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29880

Experiment: Growth at pH6 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH6 and (C) D-Glucose
6,643,590	+		PFLU_RS29875	0.46	-2.4
6,643,741	+		PFLU_RS29875	0.54	-2.3
6,643,741	+		PFLU_RS29875	0.54	-3.1
6,643,741	+		PFLU_RS29875	0.54	+0.5
6,643,741	+		PFLU_RS29875	0.54	-2.5
6,643,741	+		PFLU_RS29875	0.54	-0.3
6,643,741	+		PFLU_RS29875	0.54	-2.1
6,643,741	+		PFLU_RS29875	0.54	-2.9
6,643,742	-		PFLU_RS29875	0.54	-3.1
6,643,742	-		PFLU_RS29875	0.54	-2.0
6,643,742	-		PFLU_RS29875	0.54	-0.5
6,643,742	-		PFLU_RS29875	0.54	-1.0
6,643,742	-		PFLU_RS29875	0.54	-0.5
6,643,742	-		PFLU_RS29875	0.54	-1.7
6,643,742	-		PFLU_RS29875	0.54	-3.7
6,643,742	-		PFLU_RS29875	0.54	-2.2
6,643,742	-		PFLU_RS29875	0.54	-2.5
6,643,742	-		PFLU_RS29875	0.54	-1.8
6,643,759	+		PFLU_RS29875	0.55	-2.0
6,643,759	+		PFLU_RS29875	0.55	-1.6
6,643,760	-		PFLU_RS29875	0.55	-3.0
6,643,765	+		PFLU_RS29875	0.55	-2.2
6,643,765	+		PFLU_RS29875	0.55	-0.8
6,643,765	+		PFLU_RS29875	0.55	-2.7
6,643,765	+		PFLU_RS29875	0.55	+0.3
6,643,765	+		PFLU_RS29875	0.55	-1.4
6,643,765	+		PFLU_RS29875	0.55	-2.1
6,643,765	+		PFLU_RS29875	0.55	-2.4
6,643,766	-		PFLU_RS29875	0.55	-2.5
6,643,766	-		PFLU_RS29875	0.55	-1.7
6,643,766	-		PFLU_RS29875	0.55	-2.2
6,643,766	-		PFLU_RS29875	0.55	-2.7
6,643,766	-		PFLU_RS29875	0.55	-1.9
6,643,766	-		PFLU_RS29875	0.55	-0.3
6,643,766	-		PFLU_RS29875	0.55	-1.3
6,643,766	-		PFLU_RS29875	0.55	-2.3
6,643,766	-		PFLU_RS29875	0.55	-1.4
6,643,823	+		PFLU_RS29875	0.58	-3.0
6,644,024	-		PFLU_RS29875	0.70	-1.9
6,644,137	+		PFLU_RS29875	0.76	-0.3
6,644,137	+		PFLU_RS29875	0.76	-1.4
6,644,137	+		PFLU_RS29875	0.76	-2.7
6,644,137	+		PFLU_RS29875	0.76	-0.2
6,644,137	+		PFLU_RS29875	0.76	-3.0
6,644,137	+		PFLU_RS29875	0.76	-3.0
6,644,137	+		PFLU_RS29875	0.76	-3.4
6,644,138	-		PFLU_RS29875	0.76	-3.3
6,644,138	-		PFLU_RS29875	0.76	-3.4
6,644,138	-		PFLU_RS29875	0.76	-1.7
6,644,201	+		PFLU_RS29875	0.79	-0.5
6,644,202	-		PFLU_RS29875	0.79	+0.0
6,644,235	+		PFLU_RS29875	0.81	-2.1
6,644,235	+		PFLU_RS29875	0.81	-1.2
6,644,235	+		PFLU_RS29875	0.81	-1.3
6,644,235	+		PFLU_RS29875	0.81	+2.0
6,644,236	-		PFLU_RS29875	0.81	-2.9
6,644,236	-		PFLU_RS29875	0.81	-1.9
6,644,236	-		PFLU_RS29875	0.81	-1.9
6,644,236	-		PFLU_RS29875	0.81	-3.5
6,644,236	-		PFLU_RS29875	0.81	-2.9
6,644,236	-		PFLU_RS29875	0.81	-2.1
6,644,244	-		PFLU_RS29875	0.82	-1.3
6,644,265	+		PFLU_RS29875	0.83	-3.7
6,644,293	+		PFLU_RS29875	0.84	-2.6
6,644,293	+		PFLU_RS29875	0.84	+0.5
6,644,294	-		PFLU_RS29875	0.85	-1.7
6,644,294	-		PFLU_RS29875	0.85	-1.0
6,644,294	-		PFLU_RS29875	0.85	-1.1
6,644,302	+		PFLU_RS29875	0.85	-3.4
6,644,658	+				-0.8
6,644,658	+				-1.2
6,644,658	+				-3.5
6,644,658	+				-1.6
6,644,658	+				-2.0
6,644,659	-				-2.8
6,644,659	-				-2.7
6,644,659	-				-1.1
6,644,659	-				-2.9
6,644,659	-				-2.8
6,644,659	-				-2.0
6,644,659	-				-1.2
6,644,659	-				+0.5
6,644,659	-				-1.3
6,644,659	-				-3.0
6,644,742	+		PFLU_RS29880	0.11	-2.7
6,644,743	-		PFLU_RS29880	0.11	-3.0
6,644,743	-		PFLU_RS29880	0.11	-2.3
6,644,743	-		PFLU_RS29880	0.11	-3.8
6,644,745	+		PFLU_RS29880	0.11	-1.8
6,644,746	-		PFLU_RS29880	0.11	+2.0
6,644,746	-		PFLU_RS29880	0.11	-1.8
6,644,862	+		PFLU_RS29880	0.20	-0.4
6,644,862	+		PFLU_RS29880	0.20	-2.6
6,644,862	+		PFLU_RS29880	0.20	-1.0
6,644,863	-		PFLU_RS29880	0.20	-1.8
6,644,863	-		PFLU_RS29880	0.20	-2.4
6,644,863	-		PFLU_RS29880	0.20	-3.4
6,644,880	+		PFLU_RS29880	0.21	-2.5
6,644,881	-		PFLU_RS29880	0.21	-3.3
6,644,889	+		PFLU_RS29880	0.21	-2.1
6,644,889	+		PFLU_RS29880	0.21	-2.2
6,644,889	+		PFLU_RS29880	0.21	-2.5
6,644,889	+		PFLU_RS29880	0.21	-2.3
6,644,889	+		PFLU_RS29880	0.21	-2.2
6,644,889	+		PFLU_RS29880	0.21	+0.7
6,644,889	+		PFLU_RS29880	0.21	-1.5
6,644,889	+		PFLU_RS29880	0.21	-2.5
6,644,889	+		PFLU_RS29880	0.21	-1.9
6,644,890	-		PFLU_RS29880	0.22	-3.1
6,644,890	-		PFLU_RS29880	0.22	-2.0
6,644,890	-		PFLU_RS29880	0.22	-1.0
6,644,890	-		PFLU_RS29880	0.22	-0.5
6,644,890	-		PFLU_RS29880	0.22	-1.1
6,644,890	-		PFLU_RS29880	0.22	-2.5
6,644,890	-		PFLU_RS29880	0.22	-1.5
6,644,890	-		PFLU_RS29880	0.22	-1.0
6,644,890	-		PFLU_RS29880	0.22	-2.9
6,644,890	-		PFLU_RS29880	0.22	-1.3
6,644,890	-		PFLU_RS29880	0.22	-1.4
6,644,890	-		PFLU_RS29880	0.22	-1.5
6,644,890	-		PFLU_RS29880	0.22	-3.2
6,644,890	-		PFLU_RS29880	0.22	-1.9
6,644,931	+		PFLU_RS29880	0.24	+0.8
6,644,931	+		PFLU_RS29880	0.24	+1.0
6,644,931	+		PFLU_RS29880	0.24	-0.3
6,644,931	+		PFLU_RS29880	0.24	-4.0
6,644,931	+		PFLU_RS29880	0.24	-1.8
6,644,931	+		PFLU_RS29880	0.24	-1.5
6,644,931	+		PFLU_RS29880	0.24	+1.3
6,644,931	+		PFLU_RS29880	0.24	-1.9
6,644,931	+		PFLU_RS29880	0.24	-2.3
6,644,931	+		PFLU_RS29880	0.24	-4.2
6,644,931	+		PFLU_RS29880	0.24	-2.7
6,644,931	+		PFLU_RS29880	0.24	-1.1
6,644,932	-		PFLU_RS29880	0.25	-0.2
6,644,932	-		PFLU_RS29880	0.25	-0.3
6,644,932	-		PFLU_RS29880	0.25	-2.9
6,644,935	-		PFLU_RS29880	0.25	+1.0
6,644,992	+		PFLU_RS29880	0.29	-2.2
6,645,025	+		PFLU_RS29880	0.31	-1.0
6,645,026	-		PFLU_RS29880	0.31	-0.8
6,645,026	-		PFLU_RS29880	0.31	-3.1
6,645,026	-		PFLU_RS29880	0.31	-0.4
6,645,026	-		PFLU_RS29880	0.31	-0.3
6,645,153	+		PFLU_RS29880	0.40	-1.6
6,645,153	+		PFLU_RS29880	0.40	-4.2
6,645,153	+		PFLU_RS29880	0.40	-2.1
6,645,153	+		PFLU_RS29880	0.40	-2.7
6,645,153	+		PFLU_RS29880	0.40	-3.0
6,645,153	+		PFLU_RS29880	0.40	-2.4
6,645,153	+		PFLU_RS29880	0.40	-1.5
6,645,153	+		PFLU_RS29880	0.40	-0.7
6,645,153	+		PFLU_RS29880	0.40	-2.8
6,645,153	+		PFLU_RS29880	0.40	+1.5
6,645,153	+		PFLU_RS29880	0.40	-1.1
6,645,154	-		PFLU_RS29880	0.40	-3.6
6,645,154	-		PFLU_RS29880	0.40	-0.7
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,154	-		PFLU_RS29880	0.40	-2.2
6,645,154	-		PFLU_RS29880	0.40	-0.3
6,645,154	-		PFLU_RS29880	0.40	-2.1
6,645,154	-		PFLU_RS29880	0.40	-0.7
6,645,154	-		PFLU_RS29880	0.40	-2.6
6,645,201	+		PFLU_RS29880	0.44	-1.3
6,645,243	+		PFLU_RS29880	0.46	-2.7
6,645,243	+		PFLU_RS29880	0.46	-1.4
6,645,243	+		PFLU_RS29880	0.46	-2.5
6,645,244	-		PFLU_RS29880	0.47	-3.2
6,645,439	+		PFLU_RS29880	0.60	-2.7
6,645,439	+		PFLU_RS29880	0.60	-1.7
6,645,553	+		PFLU_RS29880	0.68	-3.2
6,645,553	+		PFLU_RS29880	0.68	-2.8
6,645,553	+		PFLU_RS29880	0.68	-0.4
6,645,553	+		PFLU_RS29880	0.68	-1.2
6,645,553	+		PFLU_RS29880	0.68	-2.1
6,645,554	-		PFLU_RS29880	0.68	-3.2
6,645,554	-		PFLU_RS29880	0.68	-2.0
6,645,825	+		PFLU_RS29880	0.88	-2.3
6,645,826	-		PFLU_RS29880	0.88	-2.4
6,645,906	+				-2.8
6,645,907	-				-2.1
6,645,907	-				-3.0
6,645,907	-				-2.0
6,645,996	-				-3.3
6,646,041	+				-2.8
6,646,041	+				-1.3
6,646,041	+				-2.5
6,646,042	-				-0.2
6,646,042	-				-2.0
6,646,097	-				+0.0
6,646,097	-				+1.0
6,646,156	+				-2.0
6,646,156	+				-1.5
6,646,159	-				+0.4
6,646,201	-				-1.0
6,646,267	+				-3.0
6,646,267	+				-2.7
6,646,267	+				-0.7
6,646,267	+				-2.5
6,646,267	+				-3.0
6,646,268	-				-2.2
6,646,268	-				-3.3
6,646,268	-				-1.7
6,646,268	-				-1.3
6,646,311	+		PFLU_RS29885	0.12	+0.0
6,646,311	+		PFLU_RS29885	0.12	-0.3
6,646,316	+		PFLU_RS29885	0.12	-1.8
6,646,316	+		PFLU_RS29885	0.12	-1.1
6,646,317	-		PFLU_RS29885	0.13	-2.0
6,646,317	-		PFLU_RS29885	0.13	-3.5
6,646,363	+		PFLU_RS29885	0.17	-1.1
6,646,363	+		PFLU_RS29885	0.17	-2.2
6,646,363	+		PFLU_RS29885	0.17	-3.6
6,646,363	+		PFLU_RS29885	0.17	-3.4
6,646,363	+		PFLU_RS29885	0.17	-3.5
6,646,364	-		PFLU_RS29885	0.17	-2.4
6,646,364	-		PFLU_RS29885	0.17	-2.7
6,646,381	+		PFLU_RS29885	0.19	-0.7
6,646,382	-		PFLU_RS29885	0.19	-2.1
6,646,382	-		PFLU_RS29885	0.19	-2.9
6,646,452	+		PFLU_RS29885	0.26	-1.9
6,646,453	-		PFLU_RS29885	0.26	-2.0
6,646,522	+		PFLU_RS29885	0.34	-1.5
6,646,522	+		PFLU_RS29885	0.34	-2.7
6,646,523	-		PFLU_RS29885	0.34	-2.0
6,646,696	-		PFLU_RS29885	0.51	-3.3
6,646,777	+		PFLU_RS29885	0.60	-2.4
6,646,777	+		PFLU_RS29885	0.60	-2.9
6,646,777	+		PFLU_RS29885	0.60	-2.8
6,646,777	+		PFLU_RS29885	0.60	-2.2
6,646,777	+		PFLU_RS29885	0.60	-1.7
6,646,777	+		PFLU_RS29885	0.60	-2.7
6,646,777	+		PFLU_RS29885	0.60	-3.9
6,646,777	+		PFLU_RS29885	0.60	-2.4
6,646,777	+		PFLU_RS29885	0.60	-2.7
6,646,777	+		PFLU_RS29885	0.60	-0.5
6,646,777	+		PFLU_RS29885	0.60	-1.6
6,646,778	-		PFLU_RS29885	0.60	-2.9
6,646,778	-		PFLU_RS29885	0.60	-4.6
6,646,778	-		PFLU_RS29885	0.60	-1.1
6,646,778	-		PFLU_RS29885	0.60	-2.3
6,646,778	-		PFLU_RS29885	0.60	-1.7
6,646,778	-		PFLU_RS29885	0.60	-2.7
6,646,831	+		PFLU_RS29885	0.65	-2.6
6,646,831	+		PFLU_RS29885	0.65	-3.1
6,646,831	+		PFLU_RS29885	0.65	-2.3
6,646,831	+		PFLU_RS29885	0.65	-0.8
6,646,832	-		PFLU_RS29885	0.65	-2.5
6,646,832	-		PFLU_RS29885	0.65	-2.0
6,646,832	-		PFLU_RS29885	0.65	-2.9
6,646,904	+		PFLU_RS29885	0.73	-2.9
6,646,904	+		PFLU_RS29885	0.73	-0.9
6,646,904	+		PFLU_RS29885	0.73	-0.3
6,646,905	-		PFLU_RS29885	0.73	-1.7
6,646,905	-		PFLU_RS29885	0.73	-1.2
6,646,905	-		PFLU_RS29885	0.73	-1.1
6,646,905	-		PFLU_RS29885	0.73	-2.3