Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26905

Experiment: Growth at pH6 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH6 and (C) D-Glucose
6,004,061	+		PFLU_RS26905	0.15	-1.1
6,004,062	-		PFLU_RS26905	0.16	+0.3
6,004,080	+		PFLU_RS26905	0.20	-1.1
6,004,081	-		PFLU_RS26905	0.20	-0.5
6,004,081	-		PFLU_RS26905	0.20	-1.2
6,004,082	+		PFLU_RS26905	0.20	+0.7
6,004,082	+		PFLU_RS26905	0.20	-2.0
6,004,082	+		PFLU_RS26905	0.20	-0.5
6,004,082	+		PFLU_RS26905	0.20	-2.0
6,004,082	+		PFLU_RS26905	0.20	+1.3
6,004,082	+		PFLU_RS26905	0.20	-2.2
6,004,082	+		PFLU_RS26905	0.20	-0.7
6,004,082	+		PFLU_RS26905	0.20	+0.1
6,004,082	+		PFLU_RS26905	0.20	-1.0
6,004,082	+		PFLU_RS26905	0.20	-0.9
6,004,082	+		PFLU_RS26905	0.20	-0.0
6,004,082	+		PFLU_RS26905	0.20	+0.3
6,004,082	+		PFLU_RS26905	0.20	-2.3
6,004,082	+		PFLU_RS26905	0.20	-2.5
6,004,082	+		PFLU_RS26905	0.20	-1.2
6,004,082	+		PFLU_RS26905	0.20	-0.4
6,004,082	+		PFLU_RS26905	0.20	-0.9
6,004,082	+		PFLU_RS26905	0.20	-0.5
6,004,082	+		PFLU_RS26905	0.20	+0.7
6,004,082	+		PFLU_RS26905	0.20	-0.2
6,004,082	+		PFLU_RS26905	0.20	-1.7
6,004,082	+		PFLU_RS26905	0.20	+0.5
6,004,082	+		PFLU_RS26905	0.20	-1.9
6,004,082	+		PFLU_RS26905	0.20	+0.5
6,004,082	+		PFLU_RS26905	0.20	-0.3
6,004,082	+		PFLU_RS26905	0.20	-1.0
6,004,082	+		PFLU_RS26905	0.20	-1.7
6,004,082	+		PFLU_RS26905	0.20	-0.6
6,004,082	+		PFLU_RS26905	0.20	-0.6
6,004,082	+		PFLU_RS26905	0.20	-1.6
6,004,082	+		PFLU_RS26905	0.20	+0.5
6,004,082	+		PFLU_RS26905	0.20	-2.1
6,004,082	+		PFLU_RS26905	0.20	-1.5
6,004,083	-		PFLU_RS26905	0.20	-2.3
6,004,083	-		PFLU_RS26905	0.20	-0.2
6,004,083	-		PFLU_RS26905	0.20	-1.6
6,004,083	-		PFLU_RS26905	0.20	-1.6
6,004,083	-		PFLU_RS26905	0.20	-2.0
6,004,083	-		PFLU_RS26905	0.20	-1.2
6,004,083	-		PFLU_RS26905	0.20	+0.3
6,004,083	-		PFLU_RS26905	0.20	+1.1
6,004,083	-		PFLU_RS26905	0.20	-1.5
6,004,083	-		PFLU_RS26905	0.20	-1.9
6,004,083	-		PFLU_RS26905	0.20	-0.7
6,004,083	-		PFLU_RS26905	0.20	-1.7
6,004,083	-		PFLU_RS26905	0.20	-1.3
6,004,083	-		PFLU_RS26905	0.20	+0.6
6,004,083	-		PFLU_RS26905	0.20	-1.5
6,004,083	-		PFLU_RS26905	0.20	-1.5
6,004,083	-		PFLU_RS26905	0.20	+0.8
6,004,083	-		PFLU_RS26905	0.20	-2.3
6,004,083	-		PFLU_RS26905	0.20	+0.1
6,004,083	-		PFLU_RS26905	0.20	-0.3
6,004,083	-		PFLU_RS26905	0.20	-0.7
6,004,083	-		PFLU_RS26905	0.20	-0.7
6,004,083	-		PFLU_RS26905	0.20	+1.1
6,004,117	+		PFLU_RS26905	0.27	-1.7
6,004,117	+		PFLU_RS26905	0.27	-1.7
6,004,118	-		PFLU_RS26905	0.28	-2.3
6,004,118	-		PFLU_RS26905	0.28	-0.4
6,004,182	+		PFLU_RS26905	0.41	+0.0
6,004,182	+		PFLU_RS26905	0.41	-1.2
6,004,182	+		PFLU_RS26905	0.41	+1.0
6,004,182	+		PFLU_RS26905	0.41	-1.0
6,004,182	+		PFLU_RS26905	0.41	-1.2
6,004,183	-		PFLU_RS26905	0.41	-0.5
6,004,183	-		PFLU_RS26905	0.41	+1.5
6,004,183	-		PFLU_RS26905	0.41	-0.6
6,004,312	+		PFLU_RS26905	0.69	-0.9
6,004,312	+		PFLU_RS26905	0.69	-0.2
6,004,312	+		PFLU_RS26905	0.69	+1.3
6,004,313	-		PFLU_RS26905	0.69	-1.9
6,004,477	-				-1.1
6,004,521	+				+0.6
6,004,522	-				-0.9
6,004,528	+				-0.2
6,004,528	+				-0.5
6,004,529	-				-1.0
6,004,529	-				-0.2
6,004,533	+				+0.4
6,004,533	+				-0.5
6,004,533	+				-1.0
6,004,533	+				-0.2
6,004,533	+				+0.3
6,004,533	+				+0.3
6,004,533	+				-1.2
6,004,533	+				+1.1
6,004,533	+				+1.3
6,004,533	+				+0.5
6,004,533	+				+1.0
6,004,533	+				+1.5
6,004,533	+				+1.5
6,004,533	+				-0.9
6,004,533	+				-0.8
6,004,533	+				+0.4
6,004,533	+				+1.0
6,004,533	+				-0.3
6,004,533	+				+1.6
6,004,533	+				+1.4
6,004,533	+				+0.9
6,004,533	+				-1.2
6,004,533	+				-0.2
6,004,534	-				+2.4
6,004,534	-				-2.4
6,004,534	-				+0.5
6,004,534	-				+1.4
6,004,534	-				+1.0
6,004,534	-				+0.3
6,004,534	-				+0.2
6,004,534	-				-0.6
6,004,534	-				-0.2
6,004,534	-				-0.2
6,004,534	-				+1.2
6,004,534	-				-1.3
6,004,534	-				+0.9
6,004,534	-				+2.0
6,004,534	-				+2.1
6,004,534	-				-0.3
6,004,534	-				-0.8
6,004,534	-				-1.2
6,004,535	+				-1.6
6,004,535	+				-1.3
6,004,535	+				+1.5
6,004,535	+				+0.8
6,004,535	+				-0.0
6,004,535	+				+1.5
6,004,535	+				+0.8
6,004,535	+				-1.0
6,004,535	+				+0.4
6,004,535	+				-0.7
6,004,535	+				+0.3
6,004,535	+				+0.3
6,004,535	+				-0.1
6,004,535	+				+0.3
6,004,535	+				+1.1
6,004,536	-				+1.3
6,004,536	-				+1.1
6,004,536	-				+0.7
6,004,536	-				+0.0
6,004,536	-				+2.4
6,004,536	-				+1.5
6,004,536	-				+0.7
6,004,536	-				-0.8
6,004,536	-				+0.2
6,004,536	-				-1.3
6,004,536	-				+2.3
6,004,537	+				+0.2
6,004,537	+				-0.7
6,004,537	+				+1.6
6,004,537	+				+0.7
6,004,537	+				+0.0
6,004,537	+				-1.3
6,004,537	+				+0.6
6,004,537	+				+1.4
6,004,537	+				+0.2
6,004,537	+				-0.4
6,004,537	+				+1.2
6,004,537	+				+0.5
6,004,537	+				+0.8
6,004,537	+				-0.7
6,004,537	+				+0.0
6,004,537	+				-0.2
6,004,537	+				+1.0
6,004,537	+				-0.9
6,004,537	+				+0.4
6,004,537	+				+0.3
6,004,537	+				-0.3
6,004,537	+				-1.0
6,004,537	+				+1.0
6,004,538	-				-1.1
6,004,538	-				-1.5
6,004,538	-				-0.7
6,004,538	-				-2.0
6,004,538	-				-0.9
6,004,538	-				-0.8
6,004,538	-				+1.4
6,004,538	-				+0.6
6,004,538	-				+0.0
6,004,538	-				+1.1
6,004,538	-				+0.4
6,004,538	-				+0.5
6,004,538	-				-0.2
6,004,538	-				-0.0
6,004,538	-				-0.3
6,004,538	-				-0.3
6,004,538	-				+1.2
6,004,538	-				+2.4
6,004,538	-				+0.3
6,004,538	-				-1.6
6,004,538	-				-1.2
6,004,546	+				-1.3
6,004,546	+				+0.8
6,004,546	+				+0.3
6,004,547	-				+1.0
6,004,547	-				+0.6
6,004,549	+				-0.3
6,004,549	+				+2.5
6,004,549	+				+0.3
6,004,549	+				-0.4
6,004,549	+				+0.7
6,004,549	+				-2.5
6,004,549	+				+0.6
6,004,549	+				+0.1
6,004,549	+				+0.1
6,004,549	+				+1.2
6,004,549	+				-0.8
6,004,549	+				+1.8
6,004,549	+				-0.2
6,004,550	-				+0.3
6,004,550	-				-0.1
6,004,550	-				-0.9
6,004,550	-				-0.5
6,004,550	-				+0.8
6,004,550	-				-1.5
6,004,550	-				+0.1
6,004,550	-				+0.8
6,004,550	-				-0.3
6,004,559	-				-0.4
6,004,596	+				-0.6
6,004,596	+				+1.3
6,004,596	+				+0.4
6,004,596	+				+0.8
6,004,596	+				+0.2
6,004,596	+				+0.7
6,004,596	+				+0.6
6,004,596	+				+1.5
6,004,596	+				+1.8
6,004,596	+				-0.5
6,004,596	+				-0.0
6,004,596	+				+1.0
6,004,596	+				+1.2
6,004,596	+				+0.9
6,004,596	+				+1.3
6,004,597	-				+0.3
6,004,597	-				+1.8
6,004,597	-				+1.3
6,004,597	-				-0.1
6,004,597	-				+1.5
6,004,597	-				+0.2
6,004,597	-				-0.5
6,004,597	-				+0.8
6,004,597	-				+0.3
6,004,597	-				-0.2
6,004,597	-				+2.0
6,004,597	-				+1.0
6,004,597	-				+0.4
6,004,597	-				+0.0
6,004,597	-				+0.4
6,004,597	-				+1.6
6,004,597	-				-0.2
6,004,606	+				+3.2
6,004,606	+				+2.8
6,004,606	+				-0.0
6,004,606	+				+0.0
6,004,606	+				+1.4
6,004,606	+				+1.7
6,004,606	+				+1.5
6,004,607	-				+1.9
6,004,607	-				+1.2
6,004,607	-				+2.0
6,004,607	-				-2.5
6,004,607	-				+0.6
6,004,902	+		PFLU_RS26910	0.66	+0.6
6,005,428	+		PFLU_RS26915	0.57	-1.0
6,005,428	+		PFLU_RS26915	0.57	+0.7
6,005,436	+		PFLU_RS26915	0.59	-0.7
6,005,436	+		PFLU_RS26915	0.59	-0.2
6,005,436	+		PFLU_RS26915	0.59	+1.0
6,005,436	+		PFLU_RS26915	0.59	-1.9
6,005,436	+		PFLU_RS26915	0.59	-2.1
6,005,437	-		PFLU_RS26915	0.59	+1.0
6,005,437	-		PFLU_RS26915	0.59	+1.6
6,005,437	-		PFLU_RS26915	0.59	+0.1
6,005,437	-		PFLU_RS26915	0.59	-2.2
6,005,447	+		PFLU_RS26915	0.60	+0.4
6,005,447	+		PFLU_RS26915	0.60	-0.7
6,005,447	+		PFLU_RS26915	0.60	-2.0
6,005,448	-		PFLU_RS26915	0.60	-0.2