Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26905

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS26900 and PFLU_RS26905 overlap by 4 nucleotidesPFLU_RS26905 and PFLU_RS26910 are separated by 140 nucleotidesPFLU_RS26910 and PFLU_RS26915 overlap by 4 nucleotides PFLU_RS26900: PFLU_RS26900 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 6,002,855 to 6,003,991 _RS26900 PFLU_RS26905: PFLU_RS26905 - transcriptional regulator NrdR, at 6,003,988 to 6,004,458 _RS26905 PFLU_RS26910: PFLU_RS26910 - hypothetical protein, at 6,004,599 to 6,005,054 _RS26910 PFLU_RS26915: PFLU_RS26915 - methyltransferase, at 6,005,051 to 6,005,707 _RS26915 Position (kb) 6003 6004 6005Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6004.061 kb on + strand, within PFLU_RS26905at 6004.062 kb on - strand, within PFLU_RS26905at 6004.080 kb on + strand, within PFLU_RS26905at 6004.081 kb on - strand, within PFLU_RS26905at 6004.081 kb on - strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.082 kb on + strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.083 kb on - strand, within PFLU_RS26905at 6004.117 kb on + strand, within PFLU_RS26905at 6004.117 kb on + strand, within PFLU_RS26905at 6004.118 kb on - strand, within PFLU_RS26905at 6004.118 kb on - strand, within PFLU_RS26905at 6004.182 kb on + strand, within PFLU_RS26905at 6004.182 kb on + strand, within PFLU_RS26905at 6004.182 kb on + strand, within PFLU_RS26905at 6004.182 kb on + strand, within PFLU_RS26905at 6004.182 kb on + strand, within PFLU_RS26905at 6004.183 kb on - strand, within PFLU_RS26905at 6004.183 kb on - strand, within PFLU_RS26905at 6004.183 kb on - strand, within PFLU_RS26905at 6004.312 kb on + strand, within PFLU_RS26905at 6004.312 kb on + strand, within PFLU_RS26905at 6004.312 kb on + strand, within PFLU_RS26905at 6004.313 kb on - strand, within PFLU_RS26905at 6004.477 kb on - strandat 6004.521 kb on + strandat 6004.522 kb on - strandat 6004.528 kb on + strandat 6004.528 kb on + strandat 6004.529 kb on - strandat 6004.529 kb on - strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.533 kb on + strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.534 kb on - strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.535 kb on + strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.536 kb on - strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.537 kb on + strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.538 kb on - strandat 6004.546 kb on + strandat 6004.546 kb on + strandat 6004.546 kb on + strandat 6004.547 kb on - strandat 6004.547 kb on - strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.549 kb on + strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.550 kb on - strandat 6004.559 kb on - strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.596 kb on + strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.597 kb on - strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.606 kb on + strandat 6004.607 kb on - strandat 6004.607 kb on - strandat 6004.607 kb on - strandat 6004.607 kb on - strandat 6004.607 kb on - strandat 6004.902 kb on + strand, within PFLU_RS26910at 6005.428 kb on + strand, within PFLU_RS26915at 6005.428 kb on + strand, within PFLU_RS26915at 6005.436 kb on + strand, within PFLU_RS26915at 6005.436 kb on + strand, within PFLU_RS26915at 6005.436 kb on + strand, within PFLU_RS26915at 6005.436 kb on + strand, within PFLU_RS26915at 6005.436 kb on + strand, within PFLU_RS26915at 6005.437 kb on - strand, within PFLU_RS26915at 6005.437 kb on - strand, within PFLU_RS26915at 6005.437 kb on - strand, within PFLU_RS26915at 6005.437 kb on - strand, within PFLU_RS26915at 6005.447 kb on + strand, within PFLU_RS26915at 6005.447 kb on + strand, within PFLU_RS26915at 6005.447 kb on + strand, within PFLU_RS26915at 6005.448 kb on - strand, within PFLU_RS26915

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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6,004,061 + PFLU_RS26905 0.15 -1.1
6,004,062 - PFLU_RS26905 0.16 +0.3
6,004,080 + PFLU_RS26905 0.20 -1.1
6,004,081 - PFLU_RS26905 0.20 -0.5
6,004,081 - PFLU_RS26905 0.20 -1.2
6,004,082 + PFLU_RS26905 0.20 +0.7
6,004,082 + PFLU_RS26905 0.20 -2.0
6,004,082 + PFLU_RS26905 0.20 -0.5
6,004,082 + PFLU_RS26905 0.20 -2.0
6,004,082 + PFLU_RS26905 0.20 +1.3
6,004,082 + PFLU_RS26905 0.20 -2.2
6,004,082 + PFLU_RS26905 0.20 -0.7
6,004,082 + PFLU_RS26905 0.20 +0.1
6,004,082 + PFLU_RS26905 0.20 -1.0
6,004,082 + PFLU_RS26905 0.20 -0.9
6,004,082 + PFLU_RS26905 0.20 -0.0
6,004,082 + PFLU_RS26905 0.20 +0.3
6,004,082 + PFLU_RS26905 0.20 -2.3
6,004,082 + PFLU_RS26905 0.20 -2.5
6,004,082 + PFLU_RS26905 0.20 -1.2
6,004,082 + PFLU_RS26905 0.20 -0.4
6,004,082 + PFLU_RS26905 0.20 -0.9
6,004,082 + PFLU_RS26905 0.20 -0.5
6,004,082 + PFLU_RS26905 0.20 +0.7
6,004,082 + PFLU_RS26905 0.20 -0.2
6,004,082 + PFLU_RS26905 0.20 -1.7
6,004,082 + PFLU_RS26905 0.20 +0.5
6,004,082 + PFLU_RS26905 0.20 -1.9
6,004,082 + PFLU_RS26905 0.20 +0.5
6,004,082 + PFLU_RS26905 0.20 -0.3
6,004,082 + PFLU_RS26905 0.20 -1.0
6,004,082 + PFLU_RS26905 0.20 -1.7
6,004,082 + PFLU_RS26905 0.20 -0.6
6,004,082 + PFLU_RS26905 0.20 -0.6
6,004,082 + PFLU_RS26905 0.20 -1.6
6,004,082 + PFLU_RS26905 0.20 +0.5
6,004,082 + PFLU_RS26905 0.20 -2.1
6,004,082 + PFLU_RS26905 0.20 -1.5
6,004,083 - PFLU_RS26905 0.20 -2.3
6,004,083 - PFLU_RS26905 0.20 -0.2
6,004,083 - PFLU_RS26905 0.20 -1.6
6,004,083 - PFLU_RS26905 0.20 -1.6
6,004,083 - PFLU_RS26905 0.20 -2.0
6,004,083 - PFLU_RS26905 0.20 -1.2
6,004,083 - PFLU_RS26905 0.20 +0.3
6,004,083 - PFLU_RS26905 0.20 +1.1
6,004,083 - PFLU_RS26905 0.20 -1.5
6,004,083 - PFLU_RS26905 0.20 -1.9
6,004,083 - PFLU_RS26905 0.20 -0.7
6,004,083 - PFLU_RS26905 0.20 -1.7
6,004,083 - PFLU_RS26905 0.20 -1.3
6,004,083 - PFLU_RS26905 0.20 +0.6
6,004,083 - PFLU_RS26905 0.20 -1.5
6,004,083 - PFLU_RS26905 0.20 -1.5
6,004,083 - PFLU_RS26905 0.20 +0.8
6,004,083 - PFLU_RS26905 0.20 -2.3
6,004,083 - PFLU_RS26905 0.20 +0.1
6,004,083 - PFLU_RS26905 0.20 -0.3
6,004,083 - PFLU_RS26905 0.20 -0.7
6,004,083 - PFLU_RS26905 0.20 -0.7
6,004,083 - PFLU_RS26905 0.20 +1.1
6,004,117 + PFLU_RS26905 0.27 -1.7
6,004,117 + PFLU_RS26905 0.27 -1.7
6,004,118 - PFLU_RS26905 0.28 -2.3
6,004,118 - PFLU_RS26905 0.28 -0.4
6,004,182 + PFLU_RS26905 0.41 +0.0
6,004,182 + PFLU_RS26905 0.41 -1.2
6,004,182 + PFLU_RS26905 0.41 +1.0
6,004,182 + PFLU_RS26905 0.41 -1.0
6,004,182 + PFLU_RS26905 0.41 -1.2
6,004,183 - PFLU_RS26905 0.41 -0.5
6,004,183 - PFLU_RS26905 0.41 +1.5
6,004,183 - PFLU_RS26905 0.41 -0.6
6,004,312 + PFLU_RS26905 0.69 -0.9
6,004,312 + PFLU_RS26905 0.69 -0.2
6,004,312 + PFLU_RS26905 0.69 +1.3
6,004,313 - PFLU_RS26905 0.69 -1.9
6,004,477 - -1.1
6,004,521 + +0.6
6,004,522 - -0.9
6,004,528 + -0.2
6,004,528 + -0.5
6,004,529 - -1.0
6,004,529 - -0.2
6,004,533 + +0.4
6,004,533 + -0.5
6,004,533 + -1.0
6,004,533 + -0.2
6,004,533 + +0.3
6,004,533 + +0.3
6,004,533 + -1.2
6,004,533 + +1.1
6,004,533 + +1.3
6,004,533 + +0.5
6,004,533 + +1.0
6,004,533 + +1.5
6,004,533 + +1.5
6,004,533 + -0.9
6,004,533 + -0.8
6,004,533 + +0.4
6,004,533 + +1.0
6,004,533 + -0.3
6,004,533 + +1.6
6,004,533 + +1.4
6,004,533 + +0.9
6,004,533 + -1.2
6,004,533 + -0.2
6,004,534 - +2.4
6,004,534 - -2.4
6,004,534 - +0.5
6,004,534 - +1.4
6,004,534 - +1.0
6,004,534 - +0.3
6,004,534 - +0.2
6,004,534 - -0.6
6,004,534 - -0.2
6,004,534 - -0.2
6,004,534 - +1.2
6,004,534 - -1.3
6,004,534 - +0.9
6,004,534 - +2.0
6,004,534 - +2.1
6,004,534 - -0.3
6,004,534 - -0.8
6,004,534 - -1.2
6,004,535 + -1.6
6,004,535 + -1.3
6,004,535 + +1.5
6,004,535 + +0.8
6,004,535 + -0.0
6,004,535 + +1.5
6,004,535 + +0.8
6,004,535 + -1.0
6,004,535 + +0.4
6,004,535 + -0.7
6,004,535 + +0.3
6,004,535 + +0.3
6,004,535 + -0.1
6,004,535 + +0.3
6,004,535 + +1.1
6,004,536 - +1.3
6,004,536 - +1.1
6,004,536 - +0.7
6,004,536 - +0.0
6,004,536 - +2.4
6,004,536 - +1.5
6,004,536 - +0.7
6,004,536 - -0.8
6,004,536 - +0.2
6,004,536 - -1.3
6,004,536 - +2.3
6,004,537 + +0.2
6,004,537 + -0.7
6,004,537 + +1.6
6,004,537 + +0.7
6,004,537 + +0.0
6,004,537 + -1.3
6,004,537 + +0.6
6,004,537 + +1.4
6,004,537 + +0.2
6,004,537 + -0.4
6,004,537 + +1.2
6,004,537 + +0.5
6,004,537 + +0.8
6,004,537 + -0.7
6,004,537 + +0.0
6,004,537 + -0.2
6,004,537 + +1.0
6,004,537 + -0.9
6,004,537 + +0.4
6,004,537 + +0.3
6,004,537 + -0.3
6,004,537 + -1.0
6,004,537 + +1.0
6,004,538 - -1.1
6,004,538 - -1.5
6,004,538 - -0.7
6,004,538 - -2.0
6,004,538 - -0.9
6,004,538 - -0.8
6,004,538 - +1.4
6,004,538 - +0.6
6,004,538 - +0.0
6,004,538 - +1.1
6,004,538 - +0.4
6,004,538 - +0.5
6,004,538 - -0.2
6,004,538 - -0.0
6,004,538 - -0.3
6,004,538 - -0.3
6,004,538 - +1.2
6,004,538 - +2.4
6,004,538 - +0.3
6,004,538 - -1.6
6,004,538 - -1.2
6,004,546 + -1.3
6,004,546 + +0.8
6,004,546 + +0.3
6,004,547 - +1.0
6,004,547 - +0.6
6,004,549 + -0.3
6,004,549 + +2.5
6,004,549 + +0.3
6,004,549 + -0.4
6,004,549 + +0.7
6,004,549 + -2.5
6,004,549 + +0.6
6,004,549 + +0.1
6,004,549 + +0.1
6,004,549 + +1.2
6,004,549 + -0.8
6,004,549 + +1.8
6,004,549 + -0.2
6,004,550 - +0.3
6,004,550 - -0.1
6,004,550 - -0.9
6,004,550 - -0.5
6,004,550 - +0.8
6,004,550 - -1.5
6,004,550 - +0.1
6,004,550 - +0.8
6,004,550 - -0.3
6,004,559 - -0.4
6,004,596 + -0.6
6,004,596 + +1.3
6,004,596 + +0.4
6,004,596 + +0.8
6,004,596 + +0.2
6,004,596 + +0.7
6,004,596 + +0.6
6,004,596 + +1.5
6,004,596 + +1.8
6,004,596 + -0.5
6,004,596 + -0.0
6,004,596 + +1.0
6,004,596 + +1.2
6,004,596 + +0.9
6,004,596 + +1.3
6,004,597 - +0.3
6,004,597 - +1.8
6,004,597 - +1.3
6,004,597 - -0.1
6,004,597 - +1.5
6,004,597 - +0.2
6,004,597 - -0.5
6,004,597 - +0.8
6,004,597 - +0.3
6,004,597 - -0.2
6,004,597 - +2.0
6,004,597 - +1.0
6,004,597 - +0.4
6,004,597 - +0.0
6,004,597 - +0.4
6,004,597 - +1.6
6,004,597 - -0.2
6,004,606 + +3.2
6,004,606 + +2.8
6,004,606 + -0.0
6,004,606 + +0.0
6,004,606 + +1.4
6,004,606 + +1.7
6,004,606 + +1.5
6,004,607 - +1.9
6,004,607 - +1.2
6,004,607 - +2.0
6,004,607 - -2.5
6,004,607 - +0.6
6,004,902 + PFLU_RS26910 0.66 +0.6
6,005,428 + PFLU_RS26915 0.57 -1.0
6,005,428 + PFLU_RS26915 0.57 +0.7
6,005,436 + PFLU_RS26915 0.59 -0.7
6,005,436 + PFLU_RS26915 0.59 -0.2
6,005,436 + PFLU_RS26915 0.59 +1.0
6,005,436 + PFLU_RS26915 0.59 -1.9
6,005,436 + PFLU_RS26915 0.59 -2.1
6,005,437 - PFLU_RS26915 0.59 +1.0
6,005,437 - PFLU_RS26915 0.59 +1.6
6,005,437 - PFLU_RS26915 0.59 +0.1
6,005,437 - PFLU_RS26915 0.59 -2.2
6,005,447 + PFLU_RS26915 0.60 +0.4
6,005,447 + PFLU_RS26915 0.60 -0.7
6,005,447 + PFLU_RS26915 0.60 -2.0
6,005,448 - PFLU_RS26915 0.60 -0.2

Or see this region's nucleotide sequence