Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23580 and PFLU_RS23585 are separated by 157 nucleotides PFLU_RS23585 and PFLU_RS23590 are separated by 84 nucleotides PFLU_RS23590 and PFLU_RS23595 are separated by 216 nucleotides
PFLU_RS23580: PFLU_RS23580 - alanine transaminase, at 5,289,457 to 5,290,668
_RS23580
PFLU_RS23585: PFLU_RS23585 - GntP family permease, at 5,290,826 to 5,292,178
_RS23585
PFLU_RS23590: PFLU_RS23590 - gluconokinase, at 5,292,263 to 5,292,796
_RS23590
PFLU_RS23595: PFLU_RS23595 - LacI family DNA-binding transcriptional regulator, at 5,293,013 to 5,294,041
_RS23595
Position (kb) 5290
5291
5292
5293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5289.851 kb on - strand, within PFLU_RS23580 at 5289.865 kb on + strand, within PFLU_RS23580 at 5289.865 kb on + strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5289.866 kb on - strand, within PFLU_RS23580 at 5290.063 kb on + strand, within PFLU_RS23580 at 5290.063 kb on + strand, within PFLU_RS23580 at 5290.064 kb on - strand, within PFLU_RS23580 at 5290.064 kb on - strand, within PFLU_RS23580 at 5290.093 kb on + strand, within PFLU_RS23580 at 5290.109 kb on - strand, within PFLU_RS23580 at 5290.109 kb on - strand, within PFLU_RS23580 at 5290.192 kb on + strand, within PFLU_RS23580 at 5290.192 kb on + strand, within PFLU_RS23580 at 5290.192 kb on + strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.193 kb on - strand, within PFLU_RS23580 at 5290.270 kb on + strand, within PFLU_RS23580 at 5290.270 kb on + strand, within PFLU_RS23580 at 5290.271 kb on - strand, within PFLU_RS23580 at 5290.271 kb on - strand, within PFLU_RS23580 at 5290.279 kb on + strand, within PFLU_RS23580 at 5290.279 kb on + strand, within PFLU_RS23580 at 5290.279 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.441 kb on + strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.442 kb on - strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.468 kb on + strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.469 kb on - strand, within PFLU_RS23580 at 5290.555 kb on + strand at 5290.556 kb on - strand at 5290.688 kb on + strand at 5290.688 kb on + strand at 5290.688 kb on + strand at 5290.688 kb on + strand at 5290.689 kb on - strand at 5290.689 kb on - strand at 5290.689 kb on - strand at 5290.689 kb on - strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.827 kb on + strand at 5290.828 kb on - strand at 5290.828 kb on - strand at 5290.828 kb on - strand at 5290.828 kb on - strand at 5290.828 kb on - strand at 5290.932 kb on + strand at 5290.932 kb on + strand at 5290.932 kb on + strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5290.933 kb on - strand at 5291.322 kb on + strand, within PFLU_RS23585 at 5291.322 kb on + strand, within PFLU_RS23585 at 5291.323 kb on - strand, within PFLU_RS23585 at 5291.323 kb on - strand, within PFLU_RS23585 at 5291.500 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.556 kb on + strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.557 kb on - strand, within PFLU_RS23585 at 5291.572 kb on + strand, within PFLU_RS23585 at 5291.573 kb on - strand, within PFLU_RS23585 at 5291.626 kb on - strand, within PFLU_RS23585 at 5291.626 kb on - strand, within PFLU_RS23585 at 5292.079 kb on + strand at 5292.079 kb on + strand at 5292.080 kb on - strand at 5292.080 kb on - strand at 5292.080 kb on - strand at 5292.080 kb on - strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.143 kb on + strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.144 kb on - strand at 5292.153 kb on + strand at 5292.153 kb on + strand at 5292.153 kb on + strand at 5292.153 kb on + strand at 5292.153 kb on + strand at 5292.154 kb on - strand at 5292.154 kb on - strand at 5292.154 kb on - strand at 5292.205 kb on + strand at 5292.205 kb on + strand at 5292.205 kb on + strand at 5292.206 kb on - strand at 5292.206 kb on - strand at 5292.209 kb on - strand at 5292.209 kb on - strand at 5292.209 kb on - strand at 5292.244 kb on + strand at 5292.526 kb on - strand, within PFLU_RS23590 at 5292.536 kb on - strand, within PFLU_RS23590 at 5292.555 kb on - strand, within PFLU_RS23590 at 5292.817 kb on + strand at 5292.817 kb on + strand at 5292.817 kb on + strand at 5292.817 kb on + strand at 5292.817 kb on + strand at 5292.824 kb on - strand at 5292.824 kb on - strand at 5292.838 kb on + strand at 5292.838 kb on + strand at 5292.838 kb on + strand at 5292.838 kb on + strand at 5292.838 kb on + strand at 5292.838 kb on + strand at 5292.839 kb on - strand at 5292.839 kb on - strand at 5292.839 kb on - strand at 5292.839 kb on - strand at 5292.844 kb on + strand at 5292.845 kb on - strand at 5292.975 kb on + strand at 5292.975 kb on + strand at 5292.980 kb on + strand at 5292.980 kb on + strand at 5292.980 kb on + strand at 5292.980 kb on + strand at 5292.980 kb on + strand at 5292.980 kb on + strand at 5292.981 kb on - strand at 5292.981 kb on - strand at 5292.981 kb on - strand at 5293.022 kb on - strand at 5293.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,289,851 - PFLU_RS23580 0.33 +1.5 5,289,865 + PFLU_RS23580 0.34 +0.3 5,289,865 + PFLU_RS23580 0.34 +2.2 5,289,866 - PFLU_RS23580 0.34 +1.5 5,289,866 - PFLU_RS23580 0.34 +2.2 5,289,866 - PFLU_RS23580 0.34 -1.2 5,289,866 - PFLU_RS23580 0.34 +2.1 5,289,866 - PFLU_RS23580 0.34 +0.4 5,289,866 - PFLU_RS23580 0.34 +0.2 5,289,866 - PFLU_RS23580 0.34 +0.6 5,289,866 - PFLU_RS23580 0.34 +0.9 5,289,866 - PFLU_RS23580 0.34 +0.6 5,290,063 + PFLU_RS23580 0.50 -0.2 5,290,063 + PFLU_RS23580 0.50 +0.6 5,290,064 - PFLU_RS23580 0.50 -0.3 5,290,064 - PFLU_RS23580 0.50 +1.2 5,290,093 + PFLU_RS23580 0.52 +1.7 5,290,109 - PFLU_RS23580 0.54 -1.0 5,290,109 - PFLU_RS23580 0.54 -0.5 5,290,192 + PFLU_RS23580 0.61 -1.2 5,290,192 + PFLU_RS23580 0.61 -1.7 5,290,192 + PFLU_RS23580 0.61 -1.1 5,290,193 - PFLU_RS23580 0.61 -1.1 5,290,193 - PFLU_RS23580 0.61 -0.5 5,290,193 - PFLU_RS23580 0.61 +0.3 5,290,193 - PFLU_RS23580 0.61 +2.3 5,290,193 - PFLU_RS23580 0.61 +0.6 5,290,193 - PFLU_RS23580 0.61 -0.1 5,290,270 + PFLU_RS23580 0.67 +0.2 5,290,270 + PFLU_RS23580 0.67 +0.8 5,290,271 - PFLU_RS23580 0.67 -0.3 5,290,271 - PFLU_RS23580 0.67 -0.4 5,290,279 + PFLU_RS23580 0.68 -0.1 5,290,279 + PFLU_RS23580 0.68 +1.1 5,290,279 + PFLU_RS23580 0.68 +0.4 5,290,441 + PFLU_RS23580 0.81 -0.1 5,290,441 + PFLU_RS23580 0.81 -0.7 5,290,441 + PFLU_RS23580 0.81 -0.8 5,290,441 + PFLU_RS23580 0.81 -0.3 5,290,441 + PFLU_RS23580 0.81 +1.8 5,290,441 + PFLU_RS23580 0.81 -1.2 5,290,441 + PFLU_RS23580 0.81 -0.8 5,290,441 + PFLU_RS23580 0.81 -0.5 5,290,442 - PFLU_RS23580 0.81 +0.2 5,290,442 - PFLU_RS23580 0.81 -1.9 5,290,442 - PFLU_RS23580 0.81 +0.3 5,290,442 - PFLU_RS23580 0.81 -0.0 5,290,442 - PFLU_RS23580 0.81 +0.6 5,290,442 - PFLU_RS23580 0.81 +1.9 5,290,442 - PFLU_RS23580 0.81 +0.5 5,290,442 - PFLU_RS23580 0.81 +0.3 5,290,442 - PFLU_RS23580 0.81 +1.2 5,290,442 - PFLU_RS23580 0.81 +0.3 5,290,442 - PFLU_RS23580 0.81 -0.4 5,290,442 - PFLU_RS23580 0.81 +0.5 5,290,442 - PFLU_RS23580 0.81 +0.8 5,290,442 - PFLU_RS23580 0.81 +0.5 5,290,468 + PFLU_RS23580 0.83 -0.3 5,290,468 + PFLU_RS23580 0.83 -0.7 5,290,468 + PFLU_RS23580 0.83 +0.6 5,290,468 + PFLU_RS23580 0.83 +1.1 5,290,468 + PFLU_RS23580 0.83 -1.9 5,290,468 + PFLU_RS23580 0.83 +0.3 5,290,468 + PFLU_RS23580 0.83 -1.1 5,290,468 + PFLU_RS23580 0.83 +0.2 5,290,469 - PFLU_RS23580 0.83 +0.5 5,290,469 - PFLU_RS23580 0.83 +0.0 5,290,469 - PFLU_RS23580 0.83 -1.0 5,290,469 - PFLU_RS23580 0.83 -1.8 5,290,469 - PFLU_RS23580 0.83 +0.6 5,290,469 - PFLU_RS23580 0.83 +0.7 5,290,555 + +1.2 5,290,556 - -0.4 5,290,688 + -0.8 5,290,688 + -0.4 5,290,688 + -1.0 5,290,688 + -0.1 5,290,689 - -0.8 5,290,689 - -0.4 5,290,689 - -0.8 5,290,689 - +1.3 5,290,827 + -1.3 5,290,827 + -1.5 5,290,827 + -1.1 5,290,827 + +0.9 5,290,827 + -2.2 5,290,827 + -0.4 5,290,827 + +0.7 5,290,827 + -0.3 5,290,827 + +1.6 5,290,827 + +0.7 5,290,828 - +0.3 5,290,828 - +0.2 5,290,828 - -1.0 5,290,828 - +0.5 5,290,828 - +0.9 5,290,932 + -1.1 5,290,932 + -1.5 5,290,932 + -0.7 5,290,933 - -1.7 5,290,933 - -2.0 5,290,933 - +1.5 5,290,933 - -0.8 5,290,933 - -1.8 5,290,933 - -2.2 5,290,933 - -0.5 5,291,322 + PFLU_RS23585 0.37 -1.1 5,291,322 + PFLU_RS23585 0.37 -2.3 5,291,323 - PFLU_RS23585 0.37 -0.5 5,291,323 - PFLU_RS23585 0.37 -1.8 5,291,500 + PFLU_RS23585 0.50 -1.6 5,291,556 + PFLU_RS23585 0.54 -1.4 5,291,556 + PFLU_RS23585 0.54 -0.2 5,291,556 + PFLU_RS23585 0.54 -1.5 5,291,556 + PFLU_RS23585 0.54 -2.0 5,291,556 + PFLU_RS23585 0.54 -0.7 5,291,556 + PFLU_RS23585 0.54 +1.5 5,291,556 + PFLU_RS23585 0.54 -2.4 5,291,556 + PFLU_RS23585 0.54 -0.4 5,291,556 + PFLU_RS23585 0.54 -3.2 5,291,556 + PFLU_RS23585 0.54 -1.1 5,291,556 + PFLU_RS23585 0.54 -3.6 5,291,556 + PFLU_RS23585 0.54 +0.2 5,291,556 + PFLU_RS23585 0.54 -3.2 5,291,556 + PFLU_RS23585 0.54 -0.5 5,291,556 + PFLU_RS23585 0.54 -1.6 5,291,556 + PFLU_RS23585 0.54 -0.5 5,291,557 - PFLU_RS23585 0.54 -1.8 5,291,557 - PFLU_RS23585 0.54 -0.5 5,291,557 - PFLU_RS23585 0.54 +0.5 5,291,557 - PFLU_RS23585 0.54 -1.6 5,291,557 - PFLU_RS23585 0.54 -0.3 5,291,557 - PFLU_RS23585 0.54 -1.7 5,291,557 - PFLU_RS23585 0.54 -2.1 5,291,557 - PFLU_RS23585 0.54 -0.8 5,291,557 - PFLU_RS23585 0.54 -1.3 5,291,557 - PFLU_RS23585 0.54 -3.5 5,291,557 - PFLU_RS23585 0.54 -0.8 5,291,557 - PFLU_RS23585 0.54 +0.5 5,291,557 - PFLU_RS23585 0.54 -0.2 5,291,557 - PFLU_RS23585 0.54 -1.8 5,291,557 - PFLU_RS23585 0.54 -3.1 5,291,557 - PFLU_RS23585 0.54 -2.8 5,291,557 - PFLU_RS23585 0.54 -2.0 5,291,557 - PFLU_RS23585 0.54 -1.3 5,291,557 - PFLU_RS23585 0.54 -1.3 5,291,557 - PFLU_RS23585 0.54 -3.0 5,291,572 + PFLU_RS23585 0.55 -2.9 5,291,573 - PFLU_RS23585 0.55 -2.4 5,291,626 - PFLU_RS23585 0.59 -1.7 5,291,626 - PFLU_RS23585 0.59 -1.6 5,292,079 + -2.1 5,292,079 + -1.5 5,292,080 - -1.3 5,292,080 - -1.8 5,292,080 - -0.1 5,292,080 - -0.5 5,292,143 + -2.4 5,292,143 + -3.3 5,292,143 + -2.6 5,292,143 + -0.1 5,292,143 + -1.1 5,292,143 + -2.0 5,292,143 + -0.8 5,292,143 + -1.7 5,292,143 + -1.1 5,292,143 + -0.4 5,292,143 + -1.4 5,292,143 + -2.7 5,292,143 + -1.3 5,292,143 + -1.5 5,292,143 + -1.5 5,292,143 + +0.2 5,292,143 + -1.3 5,292,143 + -0.8 5,292,144 - -1.8 5,292,144 - -2.5 5,292,144 - -2.9 5,292,144 - -2.7 5,292,144 - +0.7 5,292,144 - -2.1 5,292,144 - -0.4 5,292,153 + -0.8 5,292,153 + -1.8 5,292,153 + -2.1 5,292,153 + -0.1 5,292,153 + -1.3 5,292,154 - -1.8 5,292,154 - -0.1 5,292,154 - -1.5 5,292,205 + -2.6 5,292,205 + -2.6 5,292,205 + -2.6 5,292,206 - -2.1 5,292,206 - -1.1 5,292,209 - -1.3 5,292,209 - -0.1 5,292,209 - -0.6 5,292,244 + -2.1 5,292,526 - PFLU_RS23590 0.49 -1.1 5,292,536 - PFLU_RS23590 0.51 -1.8 5,292,555 - PFLU_RS23590 0.55 -3.2 5,292,817 + -2.1 5,292,817 + +0.3 5,292,817 + +0.0 5,292,817 + -1.0 5,292,817 + -3.8 5,292,824 - -1.5 5,292,824 - -0.3 5,292,838 + +0.3 5,292,838 + -3.3 5,292,838 + -0.1 5,292,838 + +0.6 5,292,838 + -0.1 5,292,838 + -2.3 5,292,839 - +0.3 5,292,839 - +1.2 5,292,839 - -2.1 5,292,839 - -0.5 5,292,844 + -0.8 5,292,845 - -3.0 5,292,975 + -3.0 5,292,975 + -1.5 5,292,980 + -3.3 5,292,980 + +1.2 5,292,980 + -2.8 5,292,980 + -1.3 5,292,980 + -2.1 5,292,980 + -0.1 5,292,981 - +0.6 5,292,981 - +0.8 5,292,981 - +0.2 5,293,022 - -0.1 5,293,022 - +0.9
Or see this region's nucleotide sequence