Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20535 and PFLU_RS20540 are separated by 244 nucleotides PFLU_RS20540 and PFLU_RS20545 are separated by 64 nucleotides
PFLU_RS20535: PFLU_RS20535 - acetyl-CoA carboxylase carboxyltransferase subunit beta, at 4,623,824 to 4,624,744
_RS20535
PFLU_RS20540: PFLU_RS20540 - phosphoribosylanthranilate isomerase, at 4,624,989 to 4,625,621
_RS20540
PFLU_RS20545: PFLU_RS20545 - tRNA pseudouridine(38-40) synthase TruA, at 4,625,686 to 4,626,510
_RS20545
Position (kb) 4624
4625
4626 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4624.809 kb on - strand at 4624.809 kb on - strand at 4624.809 kb on - strand at 4624.809 kb on - strand at 4624.809 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.868 kb on - strand at 4624.950 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.960 kb on - strand at 4624.964 kb on - strand at 4624.964 kb on - strand at 4624.964 kb on - strand at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.070 kb on + strand, within PFLU_RS20540 at 4625.071 kb on - strand, within PFLU_RS20540 at 4625.071 kb on - strand, within PFLU_RS20540 at 4625.095 kb on + strand, within PFLU_RS20540 at 4625.095 kb on + strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.096 kb on - strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.103 kb on + strand, within PFLU_RS20540 at 4625.104 kb on - strand, within PFLU_RS20540 at 4625.104 kb on - strand, within PFLU_RS20540 at 4625.104 kb on - strand, within PFLU_RS20540 at 4625.104 kb on - strand, within PFLU_RS20540 at 4625.104 kb on - strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.233 kb on + strand, within PFLU_RS20540 at 4625.234 kb on - strand, within PFLU_RS20540 at 4625.234 kb on - strand, within PFLU_RS20540 at 4625.234 kb on - strand, within PFLU_RS20540 at 4625.234 kb on - strand, within PFLU_RS20540 at 4625.234 kb on - strand, within PFLU_RS20540 at 4625.266 kb on + strand, within PFLU_RS20540 at 4625.266 kb on + strand, within PFLU_RS20540 at 4625.267 kb on - strand, within PFLU_RS20540 at 4625.267 kb on - strand, within PFLU_RS20540 at 4625.267 kb on - strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.321 kb on + strand, within PFLU_RS20540 at 4625.322 kb on - strand, within PFLU_RS20540 at 4625.322 kb on - strand, within PFLU_RS20540 at 4625.322 kb on - strand, within PFLU_RS20540 at 4625.322 kb on - strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.323 kb on + strand, within PFLU_RS20540 at 4625.324 kb on - strand, within PFLU_RS20540 at 4625.324 kb on - strand, within PFLU_RS20540 at 4625.324 kb on - strand, within PFLU_RS20540 at 4625.335 kb on + strand, within PFLU_RS20540 at 4625.335 kb on + strand, within PFLU_RS20540 at 4625.336 kb on - strand, within PFLU_RS20540 at 4625.381 kb on + strand, within PFLU_RS20540 at 4625.381 kb on + strand, within PFLU_RS20540 at 4625.381 kb on + strand, within PFLU_RS20540 at 4625.382 kb on - strand, within PFLU_RS20540 at 4625.524 kb on + strand, within PFLU_RS20540 at 4625.525 kb on - strand, within PFLU_RS20540 at 4625.525 kb on - strand, within PFLU_RS20540 at 4625.525 kb on - strand, within PFLU_RS20540 at 4625.580 kb on + strand at 4625.580 kb on + strand at 4625.580 kb on + strand at 4625.581 kb on - strand at 4625.581 kb on - strand at 4625.581 kb on - strand at 4625.581 kb on - strand at 4625.581 kb on - strand at 4625.665 kb on + strand at 4625.763 kb on - strand at 4625.780 kb on + strand, within PFLU_RS20545 at 4625.780 kb on + strand, within PFLU_RS20545 at 4625.781 kb on - strand, within PFLU_RS20545 at 4625.781 kb on - strand, within PFLU_RS20545 at 4625.781 kb on - strand, within PFLU_RS20545 at 4625.781 kb on - strand, within PFLU_RS20545 at 4626.149 kb on + strand, within PFLU_RS20545 at 4626.149 kb on + strand, within PFLU_RS20545 at 4626.149 kb on + strand, within PFLU_RS20545 at 4626.149 kb on + strand, within PFLU_RS20545 at 4626.150 kb on - strand, within PFLU_RS20545 at 4626.150 kb on - strand, within PFLU_RS20545 at 4626.150 kb on - strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.158 kb on + strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.159 kb on - strand, within PFLU_RS20545 at 4626.252 kb on + strand, within PFLU_RS20545 at 4626.253 kb on - strand, within PFLU_RS20545 at 4626.255 kb on + strand, within PFLU_RS20545 at 4626.255 kb on + strand, within PFLU_RS20545 at 4626.255 kb on + strand, within PFLU_RS20545 at 4626.255 kb on + strand, within PFLU_RS20545 at 4626.256 kb on - strand, within PFLU_RS20545 at 4626.256 kb on - strand, within PFLU_RS20545 at 4626.256 kb on - strand, within PFLU_RS20545 at 4626.467 kb on + strand at 4626.467 kb on + strand at 4626.467 kb on + strand at 4626.467 kb on + strand at 4626.467 kb on + strand at 4626.468 kb on - strand at 4626.468 kb on - strand at 4626.468 kb on - strand at 4626.468 kb on - strand at 4626.468 kb on - strand at 4626.492 kb on - strand at 4626.525 kb on + strand at 4626.525 kb on + strand at 4626.525 kb on + strand at 4626.525 kb on + strand at 4626.525 kb on + strand at 4626.526 kb on - strand at 4626.526 kb on - strand at 4626.526 kb on - strand at 4626.526 kb on - strand at 4626.526 kb on - strand at 4626.526 kb on - strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.529 kb on + strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.530 kb on - strand at 4626.531 kb on + strand at 4626.531 kb on + strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.532 kb on - strand at 4626.576 kb on - strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.578 kb on + strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.579 kb on - strand at 4626.580 kb on + strand at 4626.580 kb on + strand at 4626.580 kb on + strand at 4626.580 kb on + strand at 4626.580 kb on + strand at 4626.581 kb on - strand at 4626.581 kb on - strand at 4626.581 kb on - strand at 4626.581 kb on - strand at 4626.581 kb on - strand at 4626.581 kb on - strand at 4626.590 kb on + strand at 4626.590 kb on + strand at 4626.590 kb on + strand at 4626.591 kb on - strand at 4626.612 kb on + strand at 4626.612 kb on + strand at 4626.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,624,809 - +0.6 4,624,809 - -0.6 4,624,809 - +0.7 4,624,809 - -0.8 4,624,809 - -0.1 4,624,868 - +1.5 4,624,868 - -0.2 4,624,868 - +0.8 4,624,868 - +1.2 4,624,868 - +1.1 4,624,868 - +0.2 4,624,868 - +0.5 4,624,868 - -1.6 4,624,868 - -1.4 4,624,868 - +0.2 4,624,950 - +1.2 4,624,960 - +0.8 4,624,960 - -0.4 4,624,960 - -0.4 4,624,960 - +0.1 4,624,960 - +0.8 4,624,960 - +0.4 4,624,960 - +0.6 4,624,960 - +0.8 4,624,960 - -1.1 4,624,960 - -0.2 4,624,960 - +0.3 4,624,960 - +0.2 4,624,960 - +0.5 4,624,960 - -0.1 4,624,960 - +0.0 4,624,960 - -0.8 4,624,960 - -2.1 4,624,964 - +0.0 4,624,964 - -1.5 4,624,964 - +0.8 4,625,070 + PFLU_RS20540 0.13 -3.8 4,625,070 + PFLU_RS20540 0.13 -1.4 4,625,070 + PFLU_RS20540 0.13 -0.4 4,625,070 + PFLU_RS20540 0.13 -2.8 4,625,070 + PFLU_RS20540 0.13 -3.0 4,625,070 + PFLU_RS20540 0.13 -2.4 4,625,071 - PFLU_RS20540 0.13 -2.6 4,625,071 - PFLU_RS20540 0.13 -1.1 4,625,095 + PFLU_RS20540 0.17 -2.4 4,625,095 + PFLU_RS20540 0.17 -2.2 4,625,096 - PFLU_RS20540 0.17 +0.6 4,625,096 - PFLU_RS20540 0.17 -2.2 4,625,096 - PFLU_RS20540 0.17 -2.8 4,625,096 - PFLU_RS20540 0.17 -0.4 4,625,096 - PFLU_RS20540 0.17 -0.4 4,625,096 - PFLU_RS20540 0.17 -0.8 4,625,096 - PFLU_RS20540 0.17 -2.2 4,625,103 + PFLU_RS20540 0.18 +1.0 4,625,103 + PFLU_RS20540 0.18 +0.2 4,625,103 + PFLU_RS20540 0.18 -1.8 4,625,103 + PFLU_RS20540 0.18 -2.1 4,625,103 + PFLU_RS20540 0.18 -3.4 4,625,103 + PFLU_RS20540 0.18 -1.6 4,625,104 - PFLU_RS20540 0.18 -2.4 4,625,104 - PFLU_RS20540 0.18 -1.4 4,625,104 - PFLU_RS20540 0.18 -1.8 4,625,104 - PFLU_RS20540 0.18 -2.2 4,625,104 - PFLU_RS20540 0.18 -2.4 4,625,233 + PFLU_RS20540 0.39 -2.0 4,625,233 + PFLU_RS20540 0.39 -1.9 4,625,233 + PFLU_RS20540 0.39 -1.3 4,625,233 + PFLU_RS20540 0.39 -2.7 4,625,233 + PFLU_RS20540 0.39 -1.1 4,625,233 + PFLU_RS20540 0.39 -3.1 4,625,233 + PFLU_RS20540 0.39 +1.2 4,625,234 - PFLU_RS20540 0.39 -1.8 4,625,234 - PFLU_RS20540 0.39 -2.9 4,625,234 - PFLU_RS20540 0.39 -0.8 4,625,234 - PFLU_RS20540 0.39 -3.5 4,625,234 - PFLU_RS20540 0.39 -2.6 4,625,266 + PFLU_RS20540 0.44 -1.1 4,625,266 + PFLU_RS20540 0.44 -2.2 4,625,267 - PFLU_RS20540 0.44 -1.0 4,625,267 - PFLU_RS20540 0.44 -1.4 4,625,267 - PFLU_RS20540 0.44 -1.2 4,625,321 + PFLU_RS20540 0.52 -1.6 4,625,321 + PFLU_RS20540 0.52 -3.1 4,625,321 + PFLU_RS20540 0.52 -1.4 4,625,321 + PFLU_RS20540 0.52 -2.1 4,625,321 + PFLU_RS20540 0.52 -2.4 4,625,321 + PFLU_RS20540 0.52 -1.8 4,625,322 - PFLU_RS20540 0.53 -0.4 4,625,322 - PFLU_RS20540 0.53 -1.8 4,625,322 - PFLU_RS20540 0.53 -1.0 4,625,322 - PFLU_RS20540 0.53 -2.1 4,625,323 + PFLU_RS20540 0.53 -3.6 4,625,323 + PFLU_RS20540 0.53 -1.9 4,625,323 + PFLU_RS20540 0.53 +1.2 4,625,323 + PFLU_RS20540 0.53 -3.3 4,625,323 + PFLU_RS20540 0.53 -1.9 4,625,323 + PFLU_RS20540 0.53 -1.9 4,625,323 + PFLU_RS20540 0.53 -2.7 4,625,324 - PFLU_RS20540 0.53 -2.2 4,625,324 - PFLU_RS20540 0.53 -2.1 4,625,324 - PFLU_RS20540 0.53 -2.9 4,625,335 + PFLU_RS20540 0.55 -2.5 4,625,335 + PFLU_RS20540 0.55 -1.9 4,625,336 - PFLU_RS20540 0.55 -3.6 4,625,381 + PFLU_RS20540 0.62 -2.1 4,625,381 + PFLU_RS20540 0.62 -0.4 4,625,381 + PFLU_RS20540 0.62 -2.5 4,625,382 - PFLU_RS20540 0.62 +0.2 4,625,524 + PFLU_RS20540 0.85 -2.4 4,625,525 - PFLU_RS20540 0.85 +1.2 4,625,525 - PFLU_RS20540 0.85 -3.1 4,625,525 - PFLU_RS20540 0.85 -1.9 4,625,580 + -1.4 4,625,580 + -1.4 4,625,580 + -0.8 4,625,581 - -1.8 4,625,581 - -2.1 4,625,581 - -3.6 4,625,581 - -1.7 4,625,581 - -2.1 4,625,665 + -1.2 4,625,763 - +1.9 4,625,780 + PFLU_RS20545 0.11 +1.5 4,625,780 + PFLU_RS20545 0.11 +1.2 4,625,781 - PFLU_RS20545 0.12 +1.9 4,625,781 - PFLU_RS20545 0.12 -1.2 4,625,781 - PFLU_RS20545 0.12 +0.8 4,625,781 - PFLU_RS20545 0.12 +0.2 4,626,149 + PFLU_RS20545 0.56 +0.8 4,626,149 + PFLU_RS20545 0.56 +1.7 4,626,149 + PFLU_RS20545 0.56 -0.1 4,626,149 + PFLU_RS20545 0.56 +0.5 4,626,150 - PFLU_RS20545 0.56 +1.2 4,626,150 - PFLU_RS20545 0.56 +1.5 4,626,150 - PFLU_RS20545 0.56 -0.4 4,626,158 + PFLU_RS20545 0.57 +0.2 4,626,158 + PFLU_RS20545 0.57 -1.8 4,626,158 + PFLU_RS20545 0.57 +0.1 4,626,158 + PFLU_RS20545 0.57 -1.8 4,626,158 + PFLU_RS20545 0.57 +0.9 4,626,158 + PFLU_RS20545 0.57 -0.3 4,626,158 + PFLU_RS20545 0.57 -0.8 4,626,159 - PFLU_RS20545 0.57 -1.4 4,626,159 - PFLU_RS20545 0.57 +2.6 4,626,159 - PFLU_RS20545 0.57 -1.2 4,626,159 - PFLU_RS20545 0.57 +0.6 4,626,159 - PFLU_RS20545 0.57 +0.6 4,626,159 - PFLU_RS20545 0.57 +0.2 4,626,159 - PFLU_RS20545 0.57 +1.7 4,626,159 - PFLU_RS20545 0.57 -1.8 4,626,252 + PFLU_RS20545 0.69 +0.6 4,626,253 - PFLU_RS20545 0.69 -0.8 4,626,255 + PFLU_RS20545 0.69 +1.1 4,626,255 + PFLU_RS20545 0.69 +1.0 4,626,255 + PFLU_RS20545 0.69 -0.4 4,626,255 + PFLU_RS20545 0.69 -1.9 4,626,256 - PFLU_RS20545 0.69 -1.1 4,626,256 - PFLU_RS20545 0.69 +2.0 4,626,256 - PFLU_RS20545 0.69 +0.6 4,626,467 + +0.2 4,626,467 + -0.4 4,626,467 + -1.6 4,626,467 + -0.1 4,626,467 + +0.9 4,626,468 - -0.5 4,626,468 - -2.2 4,626,468 - +0.8 4,626,468 - +0.0 4,626,468 - -0.2 4,626,492 - -0.5 4,626,525 + +1.6 4,626,525 + +0.6 4,626,525 + +0.7 4,626,525 + +1.0 4,626,525 + +1.6 4,626,526 - -0.0 4,626,526 - +0.0 4,626,526 - +0.1 4,626,526 - +1.6 4,626,526 - +1.6 4,626,526 - -0.8 4,626,529 + +0.4 4,626,529 + -1.2 4,626,529 + -0.8 4,626,529 + -0.4 4,626,529 + -1.5 4,626,529 + +0.5 4,626,529 + +1.2 4,626,529 + +0.6 4,626,529 + +0.9 4,626,530 - +0.5 4,626,530 - +0.1 4,626,530 - -0.9 4,626,530 - -0.1 4,626,530 - +0.5 4,626,530 - -0.4 4,626,530 - +1.6 4,626,530 - +0.2 4,626,531 + -0.3 4,626,531 + +0.5 4,626,532 - +0.1 4,626,532 - -0.8 4,626,532 - -0.6 4,626,532 - +1.2 4,626,532 - +0.4 4,626,532 - -0.0 4,626,532 - -0.6 4,626,532 - +0.7 4,626,576 - +1.0 4,626,578 + +0.2 4,626,578 + -0.0 4,626,578 + +1.5 4,626,578 + +1.2 4,626,578 + +0.2 4,626,578 + +0.2 4,626,578 + +1.2 4,626,578 + -0.5 4,626,578 + +0.7 4,626,578 + -1.0 4,626,578 + +0.1 4,626,578 + -1.1 4,626,578 + +0.2 4,626,578 + -0.8 4,626,578 + -1.1 4,626,578 + +3.2 4,626,578 + -1.8 4,626,578 + -2.1 4,626,578 + +1.1 4,626,579 - +0.5 4,626,579 - -0.6 4,626,579 - -0.7 4,626,579 - +1.1 4,626,579 - -0.0 4,626,579 - -0.2 4,626,579 - -0.4 4,626,579 - -0.4 4,626,579 - -0.8 4,626,579 - +1.2 4,626,579 - +0.7 4,626,580 + -1.4 4,626,580 + -1.4 4,626,580 + -0.7 4,626,580 + -0.5 4,626,580 + -0.2 4,626,581 - -1.0 4,626,581 - -1.6 4,626,581 - -1.6 4,626,581 - +0.5 4,626,581 - -0.4 4,626,581 - +0.1 4,626,590 + +0.5 4,626,590 + +0.1 4,626,590 + +1.1 4,626,591 - +1.0 4,626,612 + +0.9 4,626,612 + +0.2 4,626,613 - +0.0
Or see this region's nucleotide sequence