Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18880 and PFLU_RS18885 are separated by 249 nucleotides PFLU_RS18885 and PFLU_RS18890 overlap by 4 nucleotides PFLU_RS18890 and PFLU_RS18895 are separated by 153 nucleotides
PFLU_RS18880: PFLU_RS18880 - glutamine--tRNA ligase/YqeY domain fusion protein, at 4,267,167 to 4,268,867
_RS18880
PFLU_RS18885: PFLU_RS18885 - peptidyl-prolyl cis-trans isomerase, at 4,269,117 to 4,269,620
_RS18885
PFLU_RS18890: PFLU_RS18890 - UDP-2,3-diacylglucosamine diphosphatase, at 4,269,617 to 4,270,366
_RS18890
PFLU_RS18895: PFLU_RS18895 - DHA2 family efflux MFS transporter permease subunit, at 4,270,520 to 4,272,049
_RS18895
Position (kb) 4269
4270 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4268.980 kb on + strand at 4268.981 kb on - strand at 4268.981 kb on - strand at 4268.981 kb on - strand at 4268.987 kb on + strand at 4268.987 kb on + strand at 4268.987 kb on + strand at 4268.987 kb on + strand at 4269.029 kb on - strand at 4269.109 kb on + strand at 4269.109 kb on + strand at 4269.110 kb on - strand at 4269.110 kb on - strand at 4269.366 kb on + strand, within PFLU_RS18885 at 4269.366 kb on + strand, within PFLU_RS18885 at 4269.366 kb on + strand, within PFLU_RS18885 at 4269.366 kb on + strand, within PFLU_RS18885 at 4269.621 kb on + strand at 4269.622 kb on - strand at 4269.622 kb on - strand at 4269.622 kb on - strand at 4269.622 kb on - strand at 4269.622 kb on - strand at 4270.452 kb on + strand at 4270.452 kb on + strand at 4270.452 kb on + strand at 4270.452 kb on + strand at 4270.453 kb on - strand at 4270.453 kb on - strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.507 kb on + strand at 4270.508 kb on - strand at 4270.508 kb on - strand at 4270.508 kb on - strand at 4270.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,268,980 + -3.1 4,268,981 - +1.0 4,268,981 - +0.9 4,268,981 - +1.0 4,268,987 + -1.0 4,268,987 + +0.1 4,268,987 + +1.0 4,268,987 + -1.3 4,269,029 - +1.3 4,269,109 + -1.6 4,269,109 + -0.9 4,269,110 - -1.8 4,269,110 - +1.6 4,269,366 + PFLU_RS18885 0.49 -1.6 4,269,366 + PFLU_RS18885 0.49 -1.0 4,269,366 + PFLU_RS18885 0.49 -0.6 4,269,366 + PFLU_RS18885 0.49 -0.2 4,269,621 + -0.1 4,269,622 - -3.2 4,269,622 - -0.6 4,269,622 - +0.8 4,269,622 - -0.5 4,269,622 - -0.6 4,270,452 + -0.1 4,270,452 + +0.9 4,270,452 + +1.1 4,270,452 + +0.7 4,270,453 - +0.6 4,270,453 - -0.1 4,270,507 + +0.5 4,270,507 + +1.5 4,270,507 + -0.3 4,270,507 + +0.6 4,270,507 + +0.5 4,270,507 + +0.0 4,270,507 + -0.7 4,270,507 + -2.3 4,270,508 - +0.6 4,270,508 - -0.1 4,270,508 - +0.4 4,270,508 - -0.6
Or see this region's nucleotide sequence