Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18720 and PFLU_RS18725 are separated by 86 nucleotides PFLU_RS18725 and PFLU_RS31295 are separated by 12 nucleotides PFLU_RS31295 and PFLU_RS18735 are separated by 233 nucleotides PFLU_RS18735 and PFLU_RS18740 are separated by 180 nucleotides
PFLU_RS18720: PFLU_RS18720 - MFS transporter, at 4,234,108 to 4,235,472
_RS18720
PFLU_RS18725: PFLU_RS18725 - alpha/beta hydrolase, at 4,235,559 to 4,235,780
_RS18725
PFLU_RS31295: PFLU_RS31295 - DUF2282 domain-containing protein, at 4,235,793 to 4,235,945
_RS31295
PFLU_RS18735: PFLU_RS18735 - hypothetical protein, at 4,236,179 to 4,236,577
_RS18735
PFLU_RS18740: PFLU_RS18740 - Dyp-type peroxidase, at 4,236,758 to 4,237,633
_RS18740
Position (kb) 4235
4236 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4234.579 kb on - strand, within PFLU_RS18720 at 4234.650 kb on + strand, within PFLU_RS18720 at 4234.651 kb on - strand, within PFLU_RS18720 at 4234.651 kb on - strand, within PFLU_RS18720 at 4234.651 kb on - strand, within PFLU_RS18720 at 4234.958 kb on + strand, within PFLU_RS18720 at 4234.959 kb on - strand, within PFLU_RS18720 at 4234.959 kb on - strand, within PFLU_RS18720 at 4234.959 kb on - strand, within PFLU_RS18720 at 4234.959 kb on - strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.016 kb on + strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.017 kb on - strand, within PFLU_RS18720 at 4235.043 kb on + strand, within PFLU_RS18720 at 4235.043 kb on + strand, within PFLU_RS18720 at 4235.043 kb on + strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.044 kb on - strand, within PFLU_RS18720 at 4235.045 kb on + strand, within PFLU_RS18720 at 4235.045 kb on + strand, within PFLU_RS18720 at 4235.045 kb on + strand, within PFLU_RS18720 at 4235.045 kb on + strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.046 kb on - strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.078 kb on + strand, within PFLU_RS18720 at 4235.079 kb on - strand, within PFLU_RS18720 at 4235.079 kb on - strand, within PFLU_RS18720 at 4235.079 kb on - strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.082 kb on + strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.083 kb on - strand, within PFLU_RS18720 at 4235.202 kb on + strand, within PFLU_RS18720 at 4235.225 kb on + strand, within PFLU_RS18720 at 4235.225 kb on + strand, within PFLU_RS18720 at 4235.225 kb on + strand, within PFLU_RS18720 at 4235.225 kb on + strand, within PFLU_RS18720 at 4235.225 kb on + strand, within PFLU_RS18720 at 4235.226 kb on - strand, within PFLU_RS18720 at 4235.297 kb on + strand, within PFLU_RS18720 at 4235.298 kb on - strand, within PFLU_RS18720 at 4235.298 kb on - strand, within PFLU_RS18720 at 4235.439 kb on + strand at 4235.440 kb on - strand at 4235.502 kb on + strand at 4235.502 kb on + strand at 4235.503 kb on - strand at 4235.503 kb on - strand at 4235.554 kb on + strand at 4235.554 kb on + strand at 4235.555 kb on - strand at 4235.627 kb on + strand, within PFLU_RS18725 at 4235.729 kb on + strand, within PFLU_RS18725 at 4235.730 kb on - strand, within PFLU_RS18725 at 4235.932 kb on + strand at 4236.085 kb on + strand at 4236.085 kb on + strand at 4236.085 kb on + strand at 4236.086 kb on - strand at 4236.086 kb on - strand at 4236.086 kb on - strand at 4236.086 kb on - strand at 4236.104 kb on + strand at 4236.104 kb on + strand at 4236.104 kb on + strand at 4236.105 kb on - strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.183 kb on + strand at 4236.184 kb on - strand at 4236.184 kb on - strand at 4236.184 kb on - strand at 4236.184 kb on - strand at 4236.184 kb on - strand at 4236.184 kb on - strand at 4236.187 kb on + strand at 4236.187 kb on + strand at 4236.187 kb on + strand at 4236.187 kb on + strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.188 kb on - strand at 4236.371 kb on - strand, within PFLU_RS18735 at 4236.421 kb on + strand, within PFLU_RS18735 at 4236.562 kb on + strand at 4236.562 kb on + strand at 4236.562 kb on + strand at 4236.562 kb on + strand at 4236.562 kb on + strand at 4236.563 kb on - strand at 4236.563 kb on - strand at 4236.563 kb on - strand at 4236.563 kb on - strand at 4236.563 kb on - strand at 4236.623 kb on + strand at 4236.623 kb on + strand at 4236.643 kb on + strand at 4236.643 kb on + strand at 4236.643 kb on + strand at 4236.643 kb on + strand at 4236.644 kb on - strand at 4236.644 kb on - strand at 4236.731 kb on + strand at 4236.731 kb on + strand at 4236.731 kb on + strand at 4236.731 kb on + strand at 4236.731 kb on + strand at 4236.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,234,579 - PFLU_RS18720 0.35 -0.4 4,234,650 + PFLU_RS18720 0.40 +0.8 4,234,651 - PFLU_RS18720 0.40 -0.6 4,234,651 - PFLU_RS18720 0.40 +0.7 4,234,651 - PFLU_RS18720 0.40 +0.2 4,234,958 + PFLU_RS18720 0.62 +0.8 4,234,959 - PFLU_RS18720 0.62 +0.0 4,234,959 - PFLU_RS18720 0.62 +1.3 4,234,959 - PFLU_RS18720 0.62 +0.0 4,234,959 - PFLU_RS18720 0.62 +0.7 4,235,016 + PFLU_RS18720 0.67 -0.2 4,235,016 + PFLU_RS18720 0.67 +1.9 4,235,016 + PFLU_RS18720 0.67 +1.6 4,235,016 + PFLU_RS18720 0.67 -1.3 4,235,016 + PFLU_RS18720 0.67 +2.2 4,235,016 + PFLU_RS18720 0.67 -0.6 4,235,016 + PFLU_RS18720 0.67 +0.3 4,235,016 + PFLU_RS18720 0.67 -0.0 4,235,016 + PFLU_RS18720 0.67 +3.3 4,235,016 + PFLU_RS18720 0.67 -0.3 4,235,016 + PFLU_RS18720 0.67 +0.0 4,235,016 + PFLU_RS18720 0.67 -0.2 4,235,017 - PFLU_RS18720 0.67 +0.0 4,235,017 - PFLU_RS18720 0.67 +0.7 4,235,017 - PFLU_RS18720 0.67 -1.0 4,235,017 - PFLU_RS18720 0.67 +1.8 4,235,017 - PFLU_RS18720 0.67 +0.0 4,235,017 - PFLU_RS18720 0.67 +0.2 4,235,017 - PFLU_RS18720 0.67 +0.5 4,235,017 - PFLU_RS18720 0.67 -1.7 4,235,017 - PFLU_RS18720 0.67 +1.9 4,235,017 - PFLU_RS18720 0.67 -0.4 4,235,017 - PFLU_RS18720 0.67 +0.9 4,235,017 - PFLU_RS18720 0.67 +0.6 4,235,043 + PFLU_RS18720 0.68 +0.6 4,235,043 + PFLU_RS18720 0.68 +0.4 4,235,043 + PFLU_RS18720 0.68 +0.4 4,235,044 - PFLU_RS18720 0.69 +0.0 4,235,044 - PFLU_RS18720 0.69 +1.0 4,235,044 - PFLU_RS18720 0.69 +1.5 4,235,044 - PFLU_RS18720 0.69 +0.3 4,235,044 - PFLU_RS18720 0.69 +0.0 4,235,044 - PFLU_RS18720 0.69 +0.1 4,235,044 - PFLU_RS18720 0.69 -2.4 4,235,044 - PFLU_RS18720 0.69 -0.7 4,235,044 - PFLU_RS18720 0.69 -1.1 4,235,044 - PFLU_RS18720 0.69 +0.6 4,235,044 - PFLU_RS18720 0.69 +1.1 4,235,045 + PFLU_RS18720 0.69 +1.4 4,235,045 + PFLU_RS18720 0.69 +0.5 4,235,045 + PFLU_RS18720 0.69 +1.1 4,235,045 + PFLU_RS18720 0.69 +0.2 4,235,046 - PFLU_RS18720 0.69 +0.7 4,235,046 - PFLU_RS18720 0.69 +0.0 4,235,046 - PFLU_RS18720 0.69 -0.5 4,235,046 - PFLU_RS18720 0.69 -2.2 4,235,046 - PFLU_RS18720 0.69 -0.2 4,235,046 - PFLU_RS18720 0.69 -0.6 4,235,046 - PFLU_RS18720 0.69 +1.0 4,235,046 - PFLU_RS18720 0.69 +1.0 4,235,078 + PFLU_RS18720 0.71 -0.7 4,235,078 + PFLU_RS18720 0.71 +0.3 4,235,078 + PFLU_RS18720 0.71 -1.2 4,235,078 + PFLU_RS18720 0.71 +0.1 4,235,078 + PFLU_RS18720 0.71 -0.3 4,235,078 + PFLU_RS18720 0.71 +0.2 4,235,079 - PFLU_RS18720 0.71 -0.5 4,235,079 - PFLU_RS18720 0.71 +0.5 4,235,079 - PFLU_RS18720 0.71 -1.0 4,235,082 + PFLU_RS18720 0.71 +2.6 4,235,082 + PFLU_RS18720 0.71 +1.4 4,235,082 + PFLU_RS18720 0.71 +1.4 4,235,082 + PFLU_RS18720 0.71 -0.5 4,235,082 + PFLU_RS18720 0.71 +1.0 4,235,082 + PFLU_RS18720 0.71 +0.2 4,235,083 - PFLU_RS18720 0.71 -0.2 4,235,083 - PFLU_RS18720 0.71 +1.0 4,235,083 - PFLU_RS18720 0.71 -0.9 4,235,083 - PFLU_RS18720 0.71 +0.0 4,235,083 - PFLU_RS18720 0.71 -0.6 4,235,083 - PFLU_RS18720 0.71 -0.5 4,235,083 - PFLU_RS18720 0.71 -1.1 4,235,083 - PFLU_RS18720 0.71 +1.7 4,235,083 - PFLU_RS18720 0.71 -0.3 4,235,083 - PFLU_RS18720 0.71 -1.8 4,235,083 - PFLU_RS18720 0.71 +0.4 4,235,202 + PFLU_RS18720 0.80 -1.1 4,235,225 + PFLU_RS18720 0.82 -1.6 4,235,225 + PFLU_RS18720 0.82 +2.3 4,235,225 + PFLU_RS18720 0.82 -0.6 4,235,225 + PFLU_RS18720 0.82 -0.9 4,235,225 + PFLU_RS18720 0.82 -0.3 4,235,226 - PFLU_RS18720 0.82 +0.2 4,235,297 + PFLU_RS18720 0.87 +1.7 4,235,298 - PFLU_RS18720 0.87 +0.2 4,235,298 - PFLU_RS18720 0.87 +1.7 4,235,439 + +0.4 4,235,440 - +0.2 4,235,502 + -0.8 4,235,502 + +0.4 4,235,503 - +0.3 4,235,503 - +0.2 4,235,554 + -1.8 4,235,554 + -1.0 4,235,555 - +0.0 4,235,627 + PFLU_RS18725 0.31 +1.6 4,235,729 + PFLU_RS18725 0.77 -1.0 4,235,730 - PFLU_RS18725 0.77 -1.7 4,235,932 + -0.5 4,236,085 + -1.7 4,236,085 + +0.2 4,236,085 + -0.8 4,236,086 - +0.4 4,236,086 - -0.6 4,236,086 - -0.1 4,236,086 - +0.0 4,236,104 + -0.1 4,236,104 + +0.4 4,236,104 + +0.4 4,236,105 - +1.1 4,236,183 + +3.0 4,236,183 + -1.0 4,236,183 + -0.7 4,236,183 + -1.0 4,236,183 + -0.3 4,236,183 + +0.1 4,236,183 + +0.2 4,236,184 - -0.3 4,236,184 - +1.7 4,236,184 - -0.8 4,236,184 - -0.1 4,236,184 - -0.3 4,236,184 - -0.6 4,236,187 + +0.0 4,236,187 + +0.8 4,236,187 + +0.5 4,236,187 + +0.3 4,236,188 - +1.5 4,236,188 - -0.9 4,236,188 - +0.4 4,236,188 - -0.6 4,236,188 - -0.3 4,236,188 - -0.6 4,236,188 - +1.0 4,236,188 - -0.3 4,236,188 - +1.6 4,236,188 - -0.7 4,236,371 - PFLU_RS18735 0.48 -0.6 4,236,421 + PFLU_RS18735 0.61 -0.6 4,236,562 + -1.3 4,236,562 + -0.7 4,236,562 + -0.7 4,236,562 + +0.7 4,236,562 + +0.0 4,236,563 - +0.2 4,236,563 - -0.7 4,236,563 - -0.7 4,236,563 - -0.6 4,236,563 - +0.7 4,236,623 + -0.4 4,236,623 + -0.6 4,236,643 + +0.1 4,236,643 + +0.6 4,236,643 + +0.0 4,236,643 + -1.2 4,236,644 - -0.4 4,236,644 - -1.1 4,236,731 + -2.4 4,236,731 + +1.5 4,236,731 + -1.0 4,236,731 + -0.3 4,236,731 + -0.7 4,236,760 - +0.7
Or see this region's nucleotide sequence