Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17395

Experiment: Growth at pH6 and (C) D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS17390 and PFLU_RS17395 overlap by 4 nucleotidesPFLU_RS17395 and PFLU_RS17400 are separated by 129 nucleotides PFLU_RS17390: PFLU_RS17390 - DUF4880 domain-containing protein, at 3,953,163 to 3,954,116 _RS17390 PFLU_RS17395: PFLU_RS17395 - sigma-70 family RNA polymerase sigma factor, at 3,954,113 to 3,954,610 _RS17395 PFLU_RS17400: PFLU_RS17400 - DUF1624 domain-containing protein, at 3,954,740 to 3,955,894 _RS17400 Position (kb) 3954 3955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3953.115 kb on + strandat 3953.115 kb on + strandat 3953.116 kb on - strandat 3953.116 kb on - strandat 3953.140 kb on - strandat 3953.159 kb on - strandat 3953.189 kb on - strandat 3953.678 kb on + strand, within PFLU_RS17390at 3953.678 kb on + strand, within PFLU_RS17390at 3953.679 kb on - strand, within PFLU_RS17390at 3953.679 kb on - strand, within PFLU_RS17390at 3953.697 kb on - strand, within PFLU_RS17390at 3954.153 kb on + strandat 3954.153 kb on + strandat 3954.153 kb on + strandat 3954.153 kb on + strandat 3954.154 kb on - strandat 3954.154 kb on - strandat 3954.204 kb on + strand, within PFLU_RS17395at 3954.205 kb on - strand, within PFLU_RS17395at 3954.205 kb on - strand, within PFLU_RS17395at 3954.363 kb on + strand, within PFLU_RS17395at 3954.363 kb on + strand, within PFLU_RS17395at 3954.364 kb on - strand, within PFLU_RS17395at 3954.424 kb on + strand, within PFLU_RS17395at 3954.549 kb on + strand, within PFLU_RS17395at 3954.549 kb on + strand, within PFLU_RS17395at 3954.550 kb on - strand, within PFLU_RS17395at 3954.550 kb on - strand, within PFLU_RS17395at 3954.550 kb on - strand, within PFLU_RS17395at 3954.551 kb on + strand, within PFLU_RS17395at 3954.551 kb on + strand, within PFLU_RS17395at 3954.552 kb on - strand, within PFLU_RS17395at 3954.573 kb on + strandat 3954.573 kb on + strandat 3954.574 kb on - strandat 3954.574 kb on - strandat 3954.634 kb on + strandat 3954.635 kb on - strandat 3954.639 kb on - strandat 3954.656 kb on + strandat 3954.699 kb on - strandat 3954.807 kb on + strandat 3954.807 kb on + strandat 3954.807 kb on + strandat 3954.807 kb on + strandat 3954.808 kb on - strandat 3954.808 kb on - strandat 3954.971 kb on + strand, within PFLU_RS17400at 3954.971 kb on + strand, within PFLU_RS17400at 3954.983 kb on + strand, within PFLU_RS17400at 3954.983 kb on + strand, within PFLU_RS17400at 3954.983 kb on + strand, within PFLU_RS17400at 3954.984 kb on - strand, within PFLU_RS17400at 3954.984 kb on - strand, within PFLU_RS17400at 3955.052 kb on - strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.100 kb on + strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.101 kb on - strand, within PFLU_RS17400at 3955.102 kb on + strand, within PFLU_RS17400at 3955.102 kb on + strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.103 kb on - strand, within PFLU_RS17400at 3955.128 kb on + strand, within PFLU_RS17400at 3955.321 kb on + strand, within PFLU_RS17400at 3955.321 kb on + strand, within PFLU_RS17400at 3955.321 kb on + strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.322 kb on - strand, within PFLU_RS17400at 3955.325 kb on + strand, within PFLU_RS17400at 3955.325 kb on + strand, within PFLU_RS17400at 3955.418 kb on + strand, within PFLU_RS17400at 3955.418 kb on + strand, within PFLU_RS17400at 3955.418 kb on + strand, within PFLU_RS17400at 3955.418 kb on + strand, within PFLU_RS17400at 3955.419 kb on - strand, within PFLU_RS17400at 3955.419 kb on - strand, within PFLU_RS17400at 3955.419 kb on - strand, within PFLU_RS17400at 3955.419 kb on - strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.422 kb on + strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.423 kb on - strand, within PFLU_RS17400at 3955.425 kb on + strand, within PFLU_RS17400at 3955.425 kb on + strand, within PFLU_RS17400at 3955.426 kb on - strand, within PFLU_RS17400at 3955.426 kb on - strand, within PFLU_RS17400at 3955.505 kb on + strand, within PFLU_RS17400at 3955.505 kb on + strand, within PFLU_RS17400at 3955.505 kb on + strand, within PFLU_RS17400at 3955.505 kb on + strand, within PFLU_RS17400at 3955.506 kb on - strand, within PFLU_RS17400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
remove
3,953,115 + +1.3
3,953,115 + -0.7
3,953,116 - -1.7
3,953,116 - +0.4
3,953,140 - -2.5
3,953,159 - +0.9
3,953,189 - +1.1
3,953,678 + PFLU_RS17390 0.54 +1.3
3,953,678 + PFLU_RS17390 0.54 -0.3
3,953,679 - PFLU_RS17390 0.54 +0.7
3,953,679 - PFLU_RS17390 0.54 +0.3
3,953,697 - PFLU_RS17390 0.56 +0.9
3,954,153 + -2.3
3,954,153 + -1.7
3,954,153 + +0.4
3,954,153 + -1.1
3,954,154 - -0.1
3,954,154 - +0.4
3,954,204 + PFLU_RS17395 0.18 +1.2
3,954,205 - PFLU_RS17395 0.18 -0.7
3,954,205 - PFLU_RS17395 0.18 -1.7
3,954,363 + PFLU_RS17395 0.50 -1.3
3,954,363 + PFLU_RS17395 0.50 -0.1
3,954,364 - PFLU_RS17395 0.50 -0.5
3,954,424 + PFLU_RS17395 0.62 +0.1
3,954,549 + PFLU_RS17395 0.88 -0.3
3,954,549 + PFLU_RS17395 0.88 +1.2
3,954,550 - PFLU_RS17395 0.88 +0.6
3,954,550 - PFLU_RS17395 0.88 +0.3
3,954,550 - PFLU_RS17395 0.88 +0.2
3,954,551 + PFLU_RS17395 0.88 -1.4
3,954,551 + PFLU_RS17395 0.88 -2.1
3,954,552 - PFLU_RS17395 0.88 +0.4
3,954,573 + +0.7
3,954,573 + -1.1
3,954,574 - +0.3
3,954,574 - +0.5
3,954,634 + -0.9
3,954,635 - -0.8
3,954,639 - -0.4
3,954,656 + -0.1
3,954,699 - +0.1
3,954,807 + -0.9
3,954,807 + +1.2
3,954,807 + +1.3
3,954,807 + -0.7
3,954,808 - +0.5
3,954,808 - +0.5
3,954,971 + PFLU_RS17400 0.20 -1.0
3,954,971 + PFLU_RS17400 0.20 +0.6
3,954,983 + PFLU_RS17400 0.21 -0.5
3,954,983 + PFLU_RS17400 0.21 +0.4
3,954,983 + PFLU_RS17400 0.21 -0.9
3,954,984 - PFLU_RS17400 0.21 +0.4
3,954,984 - PFLU_RS17400 0.21 -0.9
3,955,052 - PFLU_RS17400 0.27 -1.0
3,955,100 + PFLU_RS17400 0.31 -2.6
3,955,100 + PFLU_RS17400 0.31 +0.7
3,955,100 + PFLU_RS17400 0.31 +0.1
3,955,100 + PFLU_RS17400 0.31 +0.7
3,955,100 + PFLU_RS17400 0.31 -1.3
3,955,100 + PFLU_RS17400 0.31 +1.9
3,955,100 + PFLU_RS17400 0.31 -0.9
3,955,100 + PFLU_RS17400 0.31 +0.9
3,955,100 + PFLU_RS17400 0.31 +0.4
3,955,100 + PFLU_RS17400 0.31 -0.6
3,955,100 + PFLU_RS17400 0.31 -0.5
3,955,100 + PFLU_RS17400 0.31 -1.7
3,955,100 + PFLU_RS17400 0.31 +1.5
3,955,100 + PFLU_RS17400 0.31 -1.3
3,955,100 + PFLU_RS17400 0.31 +1.7
3,955,100 + PFLU_RS17400 0.31 -0.3
3,955,101 - PFLU_RS17400 0.31 -0.5
3,955,101 - PFLU_RS17400 0.31 +0.6
3,955,101 - PFLU_RS17400 0.31 +0.1
3,955,101 - PFLU_RS17400 0.31 +1.5
3,955,101 - PFLU_RS17400 0.31 +1.1
3,955,101 - PFLU_RS17400 0.31 -0.8
3,955,101 - PFLU_RS17400 0.31 +1.4
3,955,101 - PFLU_RS17400 0.31 -0.1
3,955,101 - PFLU_RS17400 0.31 +1.7
3,955,101 - PFLU_RS17400 0.31 -0.3
3,955,101 - PFLU_RS17400 0.31 -1.5
3,955,101 - PFLU_RS17400 0.31 +0.4
3,955,101 - PFLU_RS17400 0.31 -1.5
3,955,101 - PFLU_RS17400 0.31 +0.4
3,955,101 - PFLU_RS17400 0.31 -0.3
3,955,101 - PFLU_RS17400 0.31 +0.4
3,955,101 - PFLU_RS17400 0.31 -0.1
3,955,101 - PFLU_RS17400 0.31 -2.7
3,955,101 - PFLU_RS17400 0.31 +0.0
3,955,101 - PFLU_RS17400 0.31 -0.1
3,955,101 - PFLU_RS17400 0.31 +0.9
3,955,102 + PFLU_RS17400 0.31 +0.9
3,955,102 + PFLU_RS17400 0.31 -3.0
3,955,103 - PFLU_RS17400 0.31 -0.6
3,955,103 - PFLU_RS17400 0.31 +0.1
3,955,103 - PFLU_RS17400 0.31 -0.7
3,955,103 - PFLU_RS17400 0.31 -0.5
3,955,103 - PFLU_RS17400 0.31 -0.0
3,955,103 - PFLU_RS17400 0.31 +1.2
3,955,103 - PFLU_RS17400 0.31 -1.1
3,955,128 + PFLU_RS17400 0.34 +0.7
3,955,321 + PFLU_RS17400 0.50 +1.3
3,955,321 + PFLU_RS17400 0.50 +0.1
3,955,321 + PFLU_RS17400 0.50 +1.2
3,955,322 - PFLU_RS17400 0.50 -0.5
3,955,322 - PFLU_RS17400 0.50 +2.1
3,955,322 - PFLU_RS17400 0.50 -0.9
3,955,322 - PFLU_RS17400 0.50 +1.9
3,955,322 - PFLU_RS17400 0.50 -0.1
3,955,322 - PFLU_RS17400 0.50 -0.5
3,955,322 - PFLU_RS17400 0.50 +0.1
3,955,322 - PFLU_RS17400 0.50 +1.8
3,955,325 + PFLU_RS17400 0.51 +1.7
3,955,325 + PFLU_RS17400 0.51 -0.4
3,955,418 + PFLU_RS17400 0.59 +0.3
3,955,418 + PFLU_RS17400 0.59 +1.1
3,955,418 + PFLU_RS17400 0.59 +0.7
3,955,418 + PFLU_RS17400 0.59 +0.5
3,955,419 - PFLU_RS17400 0.59 +0.5
3,955,419 - PFLU_RS17400 0.59 +1.9
3,955,419 - PFLU_RS17400 0.59 -1.1
3,955,419 - PFLU_RS17400 0.59 -2.3
3,955,422 + PFLU_RS17400 0.59 +1.6
3,955,422 + PFLU_RS17400 0.59 +1.1
3,955,422 + PFLU_RS17400 0.59 -0.6
3,955,422 + PFLU_RS17400 0.59 +0.6
3,955,422 + PFLU_RS17400 0.59 -2.1
3,955,422 + PFLU_RS17400 0.59 -1.6
3,955,422 + PFLU_RS17400 0.59 +0.9
3,955,422 + PFLU_RS17400 0.59 -0.6
3,955,422 + PFLU_RS17400 0.59 +0.5
3,955,422 + PFLU_RS17400 0.59 -0.6
3,955,423 - PFLU_RS17400 0.59 -0.1
3,955,423 - PFLU_RS17400 0.59 -0.3
3,955,423 - PFLU_RS17400 0.59 -0.7
3,955,423 - PFLU_RS17400 0.59 +0.3
3,955,423 - PFLU_RS17400 0.59 +1.1
3,955,423 - PFLU_RS17400 0.59 -2.3
3,955,423 - PFLU_RS17400 0.59 +0.0
3,955,423 - PFLU_RS17400 0.59 +0.3
3,955,423 - PFLU_RS17400 0.59 +0.1
3,955,425 + PFLU_RS17400 0.59 -1.0
3,955,425 + PFLU_RS17400 0.59 +1.0
3,955,426 - PFLU_RS17400 0.59 -0.3
3,955,426 - PFLU_RS17400 0.59 +0.9
3,955,505 + PFLU_RS17400 0.66 +1.9
3,955,505 + PFLU_RS17400 0.66 +2.4
3,955,505 + PFLU_RS17400 0.66 +0.7
3,955,505 + PFLU_RS17400 0.66 +2.4
3,955,506 - PFLU_RS17400 0.66 +0.9

Or see this region's nucleotide sequence