Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02455 and PFLU_RS02460 are separated by 206 nucleotides PFLU_RS02460 and PFLU_RS02465 are separated by 45 nucleotides
PFLU_RS02455: PFLU_RS02455 - 3',5'-cyclic-AMP phosphodiesterase, at 563,582 to 564,397
_RS02455
PFLU_RS02460: PFLU_RS02460 - alpha/beta fold hydrolase, at 564,604 to 565,212
_RS02460
PFLU_RS02465: PFLU_RS02465 - DNA topoisomerase IV subunit B, at 565,258 to 567,162
_RS02465
Position (kb) 564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 563.795 kb on + strand, within PFLU_RS02455 at 563.796 kb on - strand, within PFLU_RS02455 at 563.796 kb on - strand, within PFLU_RS02455 at 563.812 kb on + strand, within PFLU_RS02455 at 563.962 kb on - strand, within PFLU_RS02455 at 563.981 kb on + strand, within PFLU_RS02455 at 564.165 kb on + strand, within PFLU_RS02455 at 564.165 kb on + strand, within PFLU_RS02455 at 564.377 kb on + strand at 564.378 kb on - strand at 564.378 kb on - strand at 564.395 kb on + strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.396 kb on - strand at 564.404 kb on + strand at 564.404 kb on + strand at 564.405 kb on - strand at 564.405 kb on - strand at 564.405 kb on - strand at 564.405 kb on - strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.462 kb on + strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.463 kb on - strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.466 kb on + strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.467 kb on - strand at 564.525 kb on + strand at 564.525 kb on + strand at 564.525 kb on + strand at 564.525 kb on + strand at 564.525 kb on + strand at 564.526 kb on - strand at 564.526 kb on - strand at 564.526 kb on - strand at 564.526 kb on - strand at 564.526 kb on - strand at 564.526 kb on - strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.622 kb on + strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.623 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.625 kb on - strand at 564.794 kb on + strand, within PFLU_RS02460 at 564.794 kb on + strand, within PFLU_RS02460 at 564.794 kb on + strand, within PFLU_RS02460 at 564.794 kb on + strand, within PFLU_RS02460 at 564.795 kb on - strand, within PFLU_RS02460 at 564.795 kb on - strand, within PFLU_RS02460 at 564.795 kb on - strand, within PFLU_RS02460 at 564.795 kb on - strand, within PFLU_RS02460 at 564.817 kb on + strand, within PFLU_RS02460 at 564.817 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.820 kb on + strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.821 kb on - strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.928 kb on + strand, within PFLU_RS02460 at 564.929 kb on - strand, within PFLU_RS02460 at 564.929 kb on - strand, within PFLU_RS02460 at 564.929 kb on - strand, within PFLU_RS02460 at 564.989 kb on + strand, within PFLU_RS02460 at 565.055 kb on - strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.072 kb on + strand, within PFLU_RS02460 at 565.073 kb on - strand, within PFLU_RS02460 at 565.073 kb on - strand, within PFLU_RS02460 at 565.073 kb on - strand, within PFLU_RS02460 at 565.073 kb on - strand, within PFLU_RS02460 at 565.073 kb on - strand, within PFLU_RS02460 at 565.076 kb on - strand, within PFLU_RS02460 at 565.121 kb on - strand, within PFLU_RS02460 at 565.121 kb on - strand, within PFLU_RS02460 at 565.142 kb on + strand, within PFLU_RS02460 at 565.184 kb on - strand at 565.210 kb on + strand at 565.210 kb on + strand at 565.210 kb on + strand at 565.210 kb on + strand at 565.211 kb on - strand at 565.211 kb on - strand at 565.211 kb on - strand at 565.211 kb on - strand at 565.211 kb on - strand at 565.211 kb on - strand at 565.227 kb on + strand at 565.227 kb on + strand at 565.227 kb on + strand at 565.227 kb on + strand at 565.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 563,795 + PFLU_RS02455 0.26 -0.9 563,796 - PFLU_RS02455 0.26 +0.3 563,796 - PFLU_RS02455 0.26 +1.3 563,812 + PFLU_RS02455 0.28 -1.3 563,962 - PFLU_RS02455 0.47 +1.3 563,981 + PFLU_RS02455 0.49 -1.1 564,165 + PFLU_RS02455 0.71 -1.2 564,165 + PFLU_RS02455 0.71 -0.7 564,377 + -2.0 564,378 - +1.4 564,378 - +0.4 564,395 + +0.2 564,396 - +0.1 564,396 - -2.1 564,396 - +0.3 564,396 - +0.8 564,396 - -2.0 564,396 - -0.1 564,396 - +1.1 564,404 + +0.0 564,404 + -0.3 564,405 - -0.1 564,405 - +1.6 564,405 - +0.6 564,405 - -0.3 564,462 + +0.2 564,462 + -1.6 564,462 + -0.9 564,462 + -0.5 564,462 + -0.1 564,462 + +1.0 564,462 + -0.9 564,462 + -0.1 564,462 + +1.0 564,462 + +0.1 564,462 + +1.0 564,462 + -0.4 564,462 + -1.1 564,462 + -0.1 564,462 + -1.0 564,462 + +0.2 564,462 + -1.1 564,463 - +0.2 564,463 - -1.7 564,463 - +1.7 564,463 - +0.5 564,463 - -2.2 564,463 - -1.1 564,463 - -1.3 564,463 - -2.5 564,463 - +1.5 564,463 - -0.3 564,463 - -1.2 564,463 - +1.1 564,463 - -1.3 564,463 - -2.2 564,463 - +0.4 564,463 - +0.5 564,463 - -0.4 564,463 - +1.2 564,466 + -0.7 564,466 + -1.7 564,466 + +0.5 564,466 + -0.2 564,466 + +0.2 564,466 + -0.1 564,466 + +1.0 564,466 + -1.4 564,466 + +0.6 564,466 + +0.5 564,466 + +0.2 564,466 + +0.5 564,466 + -1.6 564,466 + -0.8 564,466 + +0.5 564,466 + +0.1 564,466 + -0.3 564,466 + -1.3 564,467 - -0.5 564,467 - -0.1 564,467 - +1.7 564,467 - +0.5 564,467 - -1.2 564,467 - -0.2 564,467 - +0.6 564,467 - +0.3 564,467 - +0.4 564,467 - +0.6 564,467 - +0.3 564,467 - -1.1 564,467 - -1.6 564,525 + -0.8 564,525 + +0.5 564,525 + +1.9 564,525 + +1.6 564,525 + -1.1 564,526 - +0.2 564,526 - +0.6 564,526 - +0.1 564,526 - -1.9 564,526 - +0.5 564,526 - +0.7 564,622 + -0.4 564,622 + -0.9 564,622 + -1.9 564,622 + +0.7 564,622 + -2.0 564,622 + +0.3 564,622 + -0.7 564,622 + -1.0 564,622 + -0.2 564,622 + +0.1 564,622 + -0.2 564,622 + -0.9 564,622 + -1.7 564,622 + -1.8 564,622 + -1.9 564,622 + -0.6 564,623 - -0.1 564,623 - -0.0 564,623 - -2.7 564,623 - -2.5 564,623 - -1.9 564,623 - -1.9 564,623 - -0.9 564,623 - -0.9 564,623 - -0.1 564,623 - -1.3 564,623 - -0.1 564,623 - +0.9 564,623 - -0.2 564,623 - -0.7 564,623 - -0.4 564,623 - -0.6 564,623 - -2.7 564,623 - -0.9 564,625 - -0.1 564,625 - -0.5 564,625 - -1.6 564,625 - -1.2 564,625 - -1.2 564,625 - -0.7 564,625 - -1.5 564,625 - -1.4 564,794 + PFLU_RS02460 0.31 -2.6 564,794 + PFLU_RS02460 0.31 -0.8 564,794 + PFLU_RS02460 0.31 -0.5 564,794 + PFLU_RS02460 0.31 -1.0 564,795 - PFLU_RS02460 0.31 -1.7 564,795 - PFLU_RS02460 0.31 -0.5 564,795 - PFLU_RS02460 0.31 -0.9 564,795 - PFLU_RS02460 0.31 -0.1 564,817 + PFLU_RS02460 0.35 -0.0 564,817 + PFLU_RS02460 0.35 -0.0 564,820 + PFLU_RS02460 0.35 -1.5 564,820 + PFLU_RS02460 0.35 -1.3 564,820 + PFLU_RS02460 0.35 +0.4 564,820 + PFLU_RS02460 0.35 -0.4 564,820 + PFLU_RS02460 0.35 -0.1 564,820 + PFLU_RS02460 0.35 -1.2 564,820 + PFLU_RS02460 0.35 -0.5 564,820 + PFLU_RS02460 0.35 -1.7 564,820 + PFLU_RS02460 0.35 -0.5 564,820 + PFLU_RS02460 0.35 +0.0 564,820 + PFLU_RS02460 0.35 +0.9 564,820 + PFLU_RS02460 0.35 -0.5 564,820 + PFLU_RS02460 0.35 +0.5 564,820 + PFLU_RS02460 0.35 -1.8 564,820 + PFLU_RS02460 0.35 -1.3 564,820 + PFLU_RS02460 0.35 -1.6 564,820 + PFLU_RS02460 0.35 -3.0 564,820 + PFLU_RS02460 0.35 -0.5 564,820 + PFLU_RS02460 0.35 -1.9 564,820 + PFLU_RS02460 0.35 -0.3 564,820 + PFLU_RS02460 0.35 -0.4 564,821 - PFLU_RS02460 0.36 -1.6 564,821 - PFLU_RS02460 0.36 -0.5 564,821 - PFLU_RS02460 0.36 -1.1 564,821 - PFLU_RS02460 0.36 +0.1 564,821 - PFLU_RS02460 0.36 -0.1 564,821 - PFLU_RS02460 0.36 -1.5 564,821 - PFLU_RS02460 0.36 +0.6 564,821 - PFLU_RS02460 0.36 -1.8 564,821 - PFLU_RS02460 0.36 -1.1 564,821 - PFLU_RS02460 0.36 -4.1 564,821 - PFLU_RS02460 0.36 -1.8 564,821 - PFLU_RS02460 0.36 -0.7 564,821 - PFLU_RS02460 0.36 -0.9 564,821 - PFLU_RS02460 0.36 -0.0 564,821 - PFLU_RS02460 0.36 -2.0 564,821 - PFLU_RS02460 0.36 -2.0 564,821 - PFLU_RS02460 0.36 -1.5 564,821 - PFLU_RS02460 0.36 -2.0 564,821 - PFLU_RS02460 0.36 -1.0 564,821 - PFLU_RS02460 0.36 -1.7 564,821 - PFLU_RS02460 0.36 -0.1 564,821 - PFLU_RS02460 0.36 +0.1 564,821 - PFLU_RS02460 0.36 -1.9 564,821 - PFLU_RS02460 0.36 -1.0 564,821 - PFLU_RS02460 0.36 -1.6 564,821 - PFLU_RS02460 0.36 -0.6 564,821 - PFLU_RS02460 0.36 -0.7 564,821 - PFLU_RS02460 0.36 -0.5 564,821 - PFLU_RS02460 0.36 -1.7 564,928 + PFLU_RS02460 0.53 -1.2 564,928 + PFLU_RS02460 0.53 -0.5 564,928 + PFLU_RS02460 0.53 -1.4 564,928 + PFLU_RS02460 0.53 -0.2 564,928 + PFLU_RS02460 0.53 -3.8 564,928 + PFLU_RS02460 0.53 -0.9 564,928 + PFLU_RS02460 0.53 -3.4 564,928 + PFLU_RS02460 0.53 -0.9 564,928 + PFLU_RS02460 0.53 -1.8 564,928 + PFLU_RS02460 0.53 -3.0 564,929 - PFLU_RS02460 0.53 -1.2 564,929 - PFLU_RS02460 0.53 -1.9 564,929 - PFLU_RS02460 0.53 -0.4 564,989 + PFLU_RS02460 0.63 +0.3 565,055 - PFLU_RS02460 0.74 -1.2 565,072 + PFLU_RS02460 0.77 +0.3 565,072 + PFLU_RS02460 0.77 -0.9 565,072 + PFLU_RS02460 0.77 -0.6 565,072 + PFLU_RS02460 0.77 -1.0 565,072 + PFLU_RS02460 0.77 -0.2 565,072 + PFLU_RS02460 0.77 -1.0 565,073 - PFLU_RS02460 0.77 -1.1 565,073 - PFLU_RS02460 0.77 -0.7 565,073 - PFLU_RS02460 0.77 -1.1 565,073 - PFLU_RS02460 0.77 -4.2 565,073 - PFLU_RS02460 0.77 -1.1 565,076 - PFLU_RS02460 0.78 -0.6 565,121 - PFLU_RS02460 0.85 -1.5 565,121 - PFLU_RS02460 0.85 -0.5 565,142 + PFLU_RS02460 0.88 +0.2 565,184 - -0.8 565,210 + +0.9 565,210 + +0.1 565,210 + +1.1 565,210 + -0.6 565,211 - +0.6 565,211 - -1.0 565,211 - -1.0 565,211 - -0.8 565,211 - -1.8 565,211 - +0.5 565,227 + +0.7 565,227 + -0.2 565,227 + +0.2 565,227 + +1.3 565,231 + -0.3
Or see this region's nucleotide sequence