Experiment: H2 deepwell acetate and casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04235 and MMP_RS04240 are separated by 132 nucleotides MMP_RS04240 and MMP_RS04245 are separated by 16 nucleotides
MMP_RS04235: MMP_RS04235 - hypothetical protein, at 806,190 to 807,299
_RS04235
MMP_RS04240: MMP_RS04240 - hypothetical protein, at 807,432 to 808,670
_RS04240
MMP_RS04245: MMP_RS04245 - right-handed parallel beta-helix repeat-containing protein, at 808,687 to 810,939
_RS04245
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.501 kb on - strand, within MMP_RS04235 at 806.502 kb on + strand, within MMP_RS04235 at 806.533 kb on + strand, within MMP_RS04235 at 806.651 kb on - strand, within MMP_RS04235 at 806.652 kb on + strand, within MMP_RS04235 at 806.667 kb on + strand, within MMP_RS04235 at 806.694 kb on - strand, within MMP_RS04235 at 806.702 kb on + strand, within MMP_RS04235 at 806.711 kb on + strand, within MMP_RS04235 at 806.761 kb on - strand, within MMP_RS04235 at 806.761 kb on - strand, within MMP_RS04235 at 806.789 kb on + strand, within MMP_RS04235 at 806.791 kb on - strand, within MMP_RS04235 at 806.792 kb on + strand, within MMP_RS04235 at 806.853 kb on - strand, within MMP_RS04235 at 806.856 kb on - strand, within MMP_RS04235 at 806.862 kb on - strand, within MMP_RS04235 at 806.862 kb on - strand, within MMP_RS04235 at 806.863 kb on + strand, within MMP_RS04235 at 806.863 kb on + strand, within MMP_RS04235 at 806.863 kb on + strand, within MMP_RS04235 at 806.863 kb on + strand, within MMP_RS04235 at 806.883 kb on - strand, within MMP_RS04235 at 806.887 kb on - strand, within MMP_RS04235 at 806.974 kb on - strand, within MMP_RS04235 at 807.007 kb on - strand, within MMP_RS04235 at 807.007 kb on - strand, within MMP_RS04235 at 807.010 kb on + strand, within MMP_RS04235 at 807.010 kb on + strand, within MMP_RS04235 at 807.015 kb on - strand, within MMP_RS04235 at 807.015 kb on - strand, within MMP_RS04235 at 807.015 kb on - strand, within MMP_RS04235 at 807.016 kb on + strand, within MMP_RS04235 at 807.016 kb on + strand, within MMP_RS04235 at 807.016 kb on + strand, within MMP_RS04235 at 807.016 kb on + strand, within MMP_RS04235 at 807.017 kb on - strand, within MMP_RS04235 at 807.017 kb on - strand, within MMP_RS04235 at 807.043 kb on - strand, within MMP_RS04235 at 807.043 kb on - strand, within MMP_RS04235 at 807.044 kb on + strand, within MMP_RS04235 at 807.044 kb on + strand, within MMP_RS04235 at 807.133 kb on - strand, within MMP_RS04235 at 807.194 kb on - strand at 807.194 kb on - strand at 807.194 kb on - strand at 807.194 kb on - strand at 807.194 kb on - strand at 807.195 kb on + strand at 807.195 kb on + strand at 807.195 kb on + strand at 807.196 kb on - strand at 807.196 kb on - strand at 807.197 kb on + strand at 807.197 kb on + strand at 807.197 kb on + strand at 807.197 kb on + strand at 807.197 kb on + strand at 807.198 kb on - strand at 807.198 kb on - strand at 807.199 kb on + strand at 807.199 kb on + strand at 807.227 kb on - strand at 807.227 kb on - strand at 807.268 kb on - strand at 807.287 kb on + strand at 807.287 kb on + strand at 807.308 kb on - strand at 807.558 kb on - strand, within MMP_RS04240 at 807.559 kb on + strand, within MMP_RS04240 at 807.677 kb on + strand, within MMP_RS04240 at 807.806 kb on + strand, within MMP_RS04240 at 807.806 kb on + strand, within MMP_RS04240 at 807.807 kb on - strand, within MMP_RS04240 at 807.807 kb on - strand, within MMP_RS04240 at 807.808 kb on + strand, within MMP_RS04240 at 807.808 kb on + strand, within MMP_RS04240 at 807.808 kb on + strand, within MMP_RS04240 at 807.810 kb on - strand, within MMP_RS04240 at 807.811 kb on + strand, within MMP_RS04240 at 807.839 kb on - strand, within MMP_RS04240 at 807.866 kb on - strand, within MMP_RS04240 at 807.918 kb on + strand, within MMP_RS04240 at 807.918 kb on + strand, within MMP_RS04240 at 807.939 kb on - strand, within MMP_RS04240 at 807.955 kb on - strand, within MMP_RS04240 at 807.956 kb on + strand, within MMP_RS04240 at 807.972 kb on - strand, within MMP_RS04240 at 807.973 kb on + strand, within MMP_RS04240 at 807.985 kb on + strand, within MMP_RS04240 at 807.985 kb on + strand, within MMP_RS04240 at 808.056 kb on - strand, within MMP_RS04240 at 808.057 kb on + strand, within MMP_RS04240 at 808.064 kb on + strand, within MMP_RS04240 at 808.101 kb on + strand, within MMP_RS04240 at 808.145 kb on - strand, within MMP_RS04240 at 808.146 kb on + strand, within MMP_RS04240 at 808.148 kb on + strand, within MMP_RS04240 at 808.152 kb on - strand, within MMP_RS04240 at 808.152 kb on - strand, within MMP_RS04240 at 808.152 kb on - strand, within MMP_RS04240 at 808.152 kb on - strand, within MMP_RS04240 at 808.152 kb on - strand, within MMP_RS04240 at 808.153 kb on + strand, within MMP_RS04240 at 808.153 kb on + strand, within MMP_RS04240 at 808.174 kb on - strand, within MMP_RS04240 at 808.181 kb on + strand, within MMP_RS04240 at 808.181 kb on + strand, within MMP_RS04240 at 808.238 kb on - strand, within MMP_RS04240 at 808.238 kb on - strand, within MMP_RS04240 at 808.263 kb on + strand, within MMP_RS04240 at 808.263 kb on + strand, within MMP_RS04240 at 808.267 kb on + strand, within MMP_RS04240 at 808.271 kb on + strand, within MMP_RS04240 at 808.436 kb on - strand, within MMP_RS04240 at 808.437 kb on + strand, within MMP_RS04240 at 808.447 kb on - strand, within MMP_RS04240 at 808.447 kb on - strand, within MMP_RS04240 at 808.448 kb on + strand, within MMP_RS04240 at 808.448 kb on + strand, within MMP_RS04240 at 808.449 kb on - strand, within MMP_RS04240 at 808.449 kb on - strand, within MMP_RS04240 at 808.450 kb on + strand, within MMP_RS04240 at 808.534 kb on - strand, within MMP_RS04240 at 808.537 kb on - strand, within MMP_RS04240 at 808.537 kb on - strand, within MMP_RS04240 at 808.550 kb on - strand at 808.565 kb on - strand at 808.565 kb on - strand at 808.566 kb on + strand at 808.566 kb on + strand at 808.567 kb on - strand at 808.567 kb on - strand at 808.567 kb on - strand at 808.568 kb on + strand at 808.568 kb on + strand at 808.584 kb on - strand at 808.584 kb on - strand at 808.585 kb on + strand at 808.598 kb on + strand at 808.604 kb on - strand at 808.645 kb on + strand at 808.790 kb on - strand at 808.811 kb on - strand at 808.811 kb on - strand at 808.817 kb on + strand at 808.817 kb on + strand at 808.835 kb on - strand at 808.888 kb on + strand at 808.895 kb on - strand at 808.924 kb on - strand, within MMP_RS04245 at 809.013 kb on - strand, within MMP_RS04245 at 809.088 kb on - strand, within MMP_RS04245 at 809.088 kb on - strand, within MMP_RS04245 at 809.091 kb on - strand, within MMP_RS04245 at 809.091 kb on - strand, within MMP_RS04245 at 809.123 kb on + strand, within MMP_RS04245 at 809.124 kb on - strand, within MMP_RS04245 at 809.124 kb on - strand, within MMP_RS04245 at 809.125 kb on + strand, within MMP_RS04245 at 809.126 kb on - strand, within MMP_RS04245 at 809.155 kb on + strand, within MMP_RS04245 at 809.157 kb on - strand, within MMP_RS04245 at 809.160 kb on + strand, within MMP_RS04245 at 809.169 kb on - strand, within MMP_RS04245 at 809.170 kb on + strand, within MMP_RS04245 at 809.182 kb on + strand, within MMP_RS04245 at 809.203 kb on - strand, within MMP_RS04245 at 809.207 kb on + strand, within MMP_RS04245 at 809.208 kb on - strand, within MMP_RS04245 at 809.239 kb on + strand, within MMP_RS04245 at 809.266 kb on + strand, within MMP_RS04245 at 809.269 kb on - strand, within MMP_RS04245 at 809.271 kb on - strand, within MMP_RS04245 at 809.320 kb on + strand, within MMP_RS04245 at 809.328 kb on - strand, within MMP_RS04245 at 809.360 kb on + strand, within MMP_RS04245 at 809.360 kb on + strand, within MMP_RS04245 at 809.394 kb on - strand, within MMP_RS04245 at 809.425 kb on - strand, within MMP_RS04245 at 809.428 kb on + strand, within MMP_RS04245 at 809.475 kb on - strand, within MMP_RS04245 at 809.476 kb on + strand, within MMP_RS04245 at 809.542 kb on - strand, within MMP_RS04245 at 809.571 kb on - strand, within MMP_RS04245 at 809.572 kb on + strand, within MMP_RS04245 at 809.572 kb on + strand, within MMP_RS04245 at 809.572 kb on + strand, within MMP_RS04245 at 809.612 kb on - strand, within MMP_RS04245 at 809.612 kb on - strand, within MMP_RS04245 at 809.612 kb on - strand, within MMP_RS04245 at 809.612 kb on - strand, within MMP_RS04245 at 809.612 kb on - strand, within MMP_RS04245 at 809.613 kb on + strand, within MMP_RS04245 at 809.613 kb on + strand, within MMP_RS04245 at 809.613 kb on + strand, within MMP_RS04245
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE remove 806,501 - MMP_RS04235 0.28 +0.3 806,502 + MMP_RS04235 0.28 +1.0 806,533 + MMP_RS04235 0.31 -0.6 806,651 - MMP_RS04235 0.42 +0.9 806,652 + MMP_RS04235 0.42 +1.5 806,667 + MMP_RS04235 0.43 -0.9 806,694 - MMP_RS04235 0.45 -1.3 806,702 + MMP_RS04235 0.46 -0.6 806,711 + MMP_RS04235 0.47 +0.8 806,761 - MMP_RS04235 0.51 +0.3 806,761 - MMP_RS04235 0.51 -0.3 806,789 + MMP_RS04235 0.54 -0.5 806,791 - MMP_RS04235 0.54 -1.9 806,792 + MMP_RS04235 0.54 +0.1 806,853 - MMP_RS04235 0.60 +1.3 806,856 - MMP_RS04235 0.60 -0.8 806,862 - MMP_RS04235 0.61 +1.7 806,862 - MMP_RS04235 0.61 +0.3 806,863 + MMP_RS04235 0.61 +0.1 806,863 + MMP_RS04235 0.61 -0.4 806,863 + MMP_RS04235 0.61 -1.1 806,863 + MMP_RS04235 0.61 +1.2 806,883 - MMP_RS04235 0.62 -0.2 806,887 - MMP_RS04235 0.63 +1.5 806,974 - MMP_RS04235 0.71 +0.4 807,007 - MMP_RS04235 0.74 +1.3 807,007 - MMP_RS04235 0.74 -0.9 807,010 + MMP_RS04235 0.74 +1.5 807,010 + MMP_RS04235 0.74 +1.8 807,015 - MMP_RS04235 0.74 -1.0 807,015 - MMP_RS04235 0.74 +1.4 807,015 - MMP_RS04235 0.74 +0.3 807,016 + MMP_RS04235 0.74 -1.2 807,016 + MMP_RS04235 0.74 +0.6 807,016 + MMP_RS04235 0.74 -0.8 807,016 + MMP_RS04235 0.74 -1.3 807,017 - MMP_RS04235 0.75 +0.3 807,017 - MMP_RS04235 0.75 -0.4 807,043 - MMP_RS04235 0.77 -0.1 807,043 - MMP_RS04235 0.77 -0.4 807,044 + MMP_RS04235 0.77 +0.5 807,044 + MMP_RS04235 0.77 -1.1 807,133 - MMP_RS04235 0.85 +0.1 807,194 - -0.3 807,194 - -0.1 807,194 - +0.0 807,194 - -0.0 807,194 - +0.5 807,195 + +0.1 807,195 + +1.4 807,195 + +0.3 807,196 - +1.0 807,196 - +0.1 807,197 + +0.1 807,197 + -0.1 807,197 + -0.6 807,197 + +0.5 807,197 + -0.4 807,198 - +0.6 807,198 - -0.5 807,199 + +0.8 807,199 + +0.4 807,227 - +0.7 807,227 - -1.1 807,268 - +1.5 807,287 + +0.7 807,287 + +0.6 807,308 - +0.0 807,558 - MMP_RS04240 0.10 -1.0 807,559 + MMP_RS04240 0.10 -0.7 807,677 + MMP_RS04240 0.20 +0.8 807,806 + MMP_RS04240 0.30 +0.9 807,806 + MMP_RS04240 0.30 -1.6 807,807 - MMP_RS04240 0.30 -0.4 807,807 - MMP_RS04240 0.30 +0.1 807,808 + MMP_RS04240 0.30 +0.1 807,808 + MMP_RS04240 0.30 +0.8 807,808 + MMP_RS04240 0.30 -0.9 807,810 - MMP_RS04240 0.31 +0.4 807,811 + MMP_RS04240 0.31 -0.4 807,839 - MMP_RS04240 0.33 -0.8 807,866 - MMP_RS04240 0.35 -1.4 807,918 + MMP_RS04240 0.39 -2.0 807,918 + MMP_RS04240 0.39 +0.7 807,939 - MMP_RS04240 0.41 +0.7 807,955 - MMP_RS04240 0.42 +0.5 807,956 + MMP_RS04240 0.42 +0.3 807,972 - MMP_RS04240 0.44 +1.1 807,973 + MMP_RS04240 0.44 +0.8 807,985 + MMP_RS04240 0.45 +0.3 807,985 + MMP_RS04240 0.45 +0.5 808,056 - MMP_RS04240 0.50 +0.8 808,057 + MMP_RS04240 0.50 +0.3 808,064 + MMP_RS04240 0.51 -1.5 808,101 + MMP_RS04240 0.54 -0.2 808,145 - MMP_RS04240 0.58 +1.1 808,146 + MMP_RS04240 0.58 +1.8 808,148 + MMP_RS04240 0.58 -0.2 808,152 - MMP_RS04240 0.58 -0.5 808,152 - MMP_RS04240 0.58 +1.0 808,152 - MMP_RS04240 0.58 +0.3 808,152 - MMP_RS04240 0.58 +1.1 808,152 - MMP_RS04240 0.58 +0.0 808,153 + MMP_RS04240 0.58 +0.8 808,153 + MMP_RS04240 0.58 +0.2 808,174 - MMP_RS04240 0.60 +0.3 808,181 + MMP_RS04240 0.60 +0.1 808,181 + MMP_RS04240 0.60 -0.4 808,238 - MMP_RS04240 0.65 -0.0 808,238 - MMP_RS04240 0.65 +0.1 808,263 + MMP_RS04240 0.67 -1.0 808,263 + MMP_RS04240 0.67 -1.2 808,267 + MMP_RS04240 0.67 +1.0 808,271 + MMP_RS04240 0.68 -0.5 808,436 - MMP_RS04240 0.81 -1.1 808,437 + MMP_RS04240 0.81 +1.2 808,447 - MMP_RS04240 0.82 +0.7 808,447 - MMP_RS04240 0.82 +1.3 808,448 + MMP_RS04240 0.82 -1.0 808,448 + MMP_RS04240 0.82 +0.1 808,449 - MMP_RS04240 0.82 -0.1 808,449 - MMP_RS04240 0.82 -2.2 808,450 + MMP_RS04240 0.82 +0.3 808,534 - MMP_RS04240 0.89 -1.9 808,537 - MMP_RS04240 0.89 -1.5 808,537 - MMP_RS04240 0.89 -1.1 808,550 - +0.4 808,565 - -1.1 808,565 - -1.1 808,566 + +0.9 808,566 + +0.2 808,567 - +0.1 808,567 - +0.9 808,567 - -0.2 808,568 + -0.8 808,568 + +0.4 808,584 - +0.3 808,584 - -0.2 808,585 + +1.0 808,598 + -0.7 808,604 - +0.9 808,645 + +0.5 808,790 - +1.0 808,811 - +1.1 808,811 - +0.8 808,817 + +0.5 808,817 + -0.1 808,835 - +0.3 808,888 + +1.4 808,895 - -1.2 808,924 - MMP_RS04245 0.11 +0.6 809,013 - MMP_RS04245 0.14 +0.4 809,088 - MMP_RS04245 0.18 +0.6 809,088 - MMP_RS04245 0.18 +1.7 809,091 - MMP_RS04245 0.18 +0.2 809,091 - MMP_RS04245 0.18 +0.5 809,123 + MMP_RS04245 0.19 -0.4 809,124 - MMP_RS04245 0.19 -0.4 809,124 - MMP_RS04245 0.19 +0.3 809,125 + MMP_RS04245 0.19 +0.6 809,126 - MMP_RS04245 0.19 +0.9 809,155 + MMP_RS04245 0.21 +0.9 809,157 - MMP_RS04245 0.21 +1.0 809,160 + MMP_RS04245 0.21 +0.7 809,169 - MMP_RS04245 0.21 -0.3 809,170 + MMP_RS04245 0.21 +0.9 809,182 + MMP_RS04245 0.22 +0.8 809,203 - MMP_RS04245 0.23 -1.5 809,207 + MMP_RS04245 0.23 -0.7 809,208 - MMP_RS04245 0.23 -0.2 809,239 + MMP_RS04245 0.25 +0.7 809,266 + MMP_RS04245 0.26 -0.5 809,269 - MMP_RS04245 0.26 +0.7 809,271 - MMP_RS04245 0.26 -0.8 809,320 + MMP_RS04245 0.28 +0.0 809,328 - MMP_RS04245 0.28 -0.5 809,360 + MMP_RS04245 0.30 +1.1 809,360 + MMP_RS04245 0.30 +0.6 809,394 - MMP_RS04245 0.31 -0.3 809,425 - MMP_RS04245 0.33 +1.0 809,428 + MMP_RS04245 0.33 -0.4 809,475 - MMP_RS04245 0.35 -0.8 809,476 + MMP_RS04245 0.35 -0.9 809,542 - MMP_RS04245 0.38 +0.2 809,571 - MMP_RS04245 0.39 -0.3 809,572 + MMP_RS04245 0.39 -0.1 809,572 + MMP_RS04245 0.39 -0.6 809,572 + MMP_RS04245 0.39 +1.1 809,612 - MMP_RS04245 0.41 -0.0 809,612 - MMP_RS04245 0.41 +0.4 809,612 - MMP_RS04245 0.41 -1.5 809,612 - MMP_RS04245 0.41 +0.1 809,612 - MMP_RS04245 0.41 -0.3 809,613 + MMP_RS04245 0.41 -1.4 809,613 + MMP_RS04245 0.41 -0.7 809,613 + MMP_RS04245 0.41 -1.5
Or see this region's nucleotide sequence