Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03720

Experiment: H2 deepwell acetate and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03710 and MMP_RS03715 are separated by 216 nucleotidesMMP_RS03715 and MMP_RS03720 are separated by 156 nucleotidesMMP_RS03720 and MMP_RS03725 are separated by 9 nucleotides MMP_RS03710: MMP_RS03710 - tRNA-Arg, at 700,097 to 700,170 _RS03710 MMP_RS03715: MMP_RS03715 - class III signal peptide-containing protein, at 700,387 to 700,983 _RS03715 MMP_RS03720: MMP_RS03720 - cation-transporting P-type ATPase, at 701,140 to 703,920 _RS03720 MMP_RS03725: MMP_RS03725 - magnesium/cobalt transporter CorA, at 703,930 to 704,988 _RS03725 Position (kb) 701 702 703 704Strain fitness (log2 ratio) -2 -1 0 1 2at 700.177 kb on - strandat 700.290 kb on - strandat 700.290 kb on - strandat 700.298 kb on + strandat 700.298 kb on + strandat 700.307 kb on + strandat 700.310 kb on + strandat 700.317 kb on + strandat 700.351 kb on - strandat 700.354 kb on + strandat 700.358 kb on - strandat 700.358 kb on - strandat 700.359 kb on + strandat 700.359 kb on + strandat 700.362 kb on - strandat 700.362 kb on - strandat 700.363 kb on + strandat 700.363 kb on + strandat 700.364 kb on - strandat 700.364 kb on - strandat 700.364 kb on - strandat 700.364 kb on - strandat 700.364 kb on - strandat 700.365 kb on + strandat 700.365 kb on + strandat 700.365 kb on + strandat 700.428 kb on + strandat 700.456 kb on - strand, within MMP_RS03715at 700.648 kb on - strand, within MMP_RS03715at 700.648 kb on - strand, within MMP_RS03715at 700.648 kb on - strand, within MMP_RS03715at 700.649 kb on + strand, within MMP_RS03715at 700.649 kb on + strand, within MMP_RS03715at 700.649 kb on + strand, within MMP_RS03715at 700.649 kb on + strand, within MMP_RS03715at 700.653 kb on - strand, within MMP_RS03715at 700.654 kb on + strand, within MMP_RS03715at 700.654 kb on + strand, within MMP_RS03715at 700.656 kb on - strand, within MMP_RS03715at 700.674 kb on + strand, within MMP_RS03715at 700.698 kb on + strand, within MMP_RS03715at 700.698 kb on + strand, within MMP_RS03715at 700.698 kb on + strand, within MMP_RS03715at 700.811 kb on + strand, within MMP_RS03715at 700.838 kb on - strand, within MMP_RS03715at 700.934 kb on + strandat 700.938 kb on + strandat 700.938 kb on + strandat 700.944 kb on + strandat 701.022 kb on + strandat 701.022 kb on + strandat 701.056 kb on + strandat 701.060 kb on - strandat 701.064 kb on - strandat 701.073 kb on - strandat 701.337 kb on + strandat 701.480 kb on - strand, within MMP_RS03720at 701.553 kb on - strand, within MMP_RS03720at 701.553 kb on - strand, within MMP_RS03720at 701.554 kb on + strand, within MMP_RS03720at 701.612 kb on + strand, within MMP_RS03720at 701.618 kb on - strand, within MMP_RS03720at 701.891 kb on - strand, within MMP_RS03720at 701.896 kb on + strand, within MMP_RS03720at 701.906 kb on - strand, within MMP_RS03720at 701.906 kb on - strand, within MMP_RS03720at 701.918 kb on - strand, within MMP_RS03720at 702.017 kb on - strand, within MMP_RS03720at 702.017 kb on - strand, within MMP_RS03720at 702.065 kb on - strand, within MMP_RS03720at 702.111 kb on - strand, within MMP_RS03720at 702.135 kb on + strand, within MMP_RS03720at 702.219 kb on - strand, within MMP_RS03720at 702.272 kb on - strand, within MMP_RS03720at 702.273 kb on + strand, within MMP_RS03720at 702.294 kb on - strand, within MMP_RS03720at 702.295 kb on + strand, within MMP_RS03720at 702.350 kb on + strand, within MMP_RS03720at 702.405 kb on - strand, within MMP_RS03720at 702.405 kb on - strand, within MMP_RS03720at 702.405 kb on - strand, within MMP_RS03720at 702.821 kb on + strand, within MMP_RS03720at 703.011 kb on - strand, within MMP_RS03720at 703.179 kb on - strand, within MMP_RS03720at 703.255 kb on + strand, within MMP_RS03720at 703.255 kb on + strand, within MMP_RS03720at 703.310 kb on + strand, within MMP_RS03720at 703.417 kb on + strand, within MMP_RS03720at 703.419 kb on + strand, within MMP_RS03720at 703.604 kb on + strand, within MMP_RS03720at 703.652 kb on + strandat 703.861 kb on - strandat 703.863 kb on - strandat 703.926 kb on - strandat 703.990 kb on - strandat 703.990 kb on - strandat 704.202 kb on + strand, within MMP_RS03725at 704.202 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.252 kb on + strand, within MMP_RS03725at 704.252 kb on + strand, within MMP_RS03725at 704.292 kb on + strand, within MMP_RS03725at 704.364 kb on + strand, within MMP_RS03725at 704.364 kb on + strand, within MMP_RS03725at 704.412 kb on - strand, within MMP_RS03725at 704.434 kb on - strand, within MMP_RS03725at 704.434 kb on - strand, within MMP_RS03725at 704.516 kb on + strand, within MMP_RS03725at 704.632 kb on + strand, within MMP_RS03725at 704.681 kb on + strand, within MMP_RS03725at 704.696 kb on + strand, within MMP_RS03725at 704.715 kb on + strand, within MMP_RS03725at 704.791 kb on + strand, within MMP_RS03725at 704.863 kb on - strand, within MMP_RS03725

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE
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700,177 - +0.7
700,290 - +0.3
700,290 - +0.6
700,298 + -0.0
700,298 + +0.2
700,307 + +0.8
700,310 + +0.3
700,317 + +0.8
700,351 - +0.6
700,354 + +0.2
700,358 - +1.0
700,358 - +0.2
700,359 + +0.8
700,359 + +1.4
700,362 - -0.3
700,362 - -0.6
700,363 + +0.3
700,363 + +0.8
700,364 - -0.3
700,364 - -0.5
700,364 - -1.3
700,364 - -0.3
700,364 - -0.4
700,365 + -0.5
700,365 + -0.7
700,365 + -0.0
700,428 + -0.3
700,456 - MMP_RS03715 0.12 +0.8
700,648 - MMP_RS03715 0.44 +0.1
700,648 - MMP_RS03715 0.44 -1.0
700,648 - MMP_RS03715 0.44 +0.4
700,649 + MMP_RS03715 0.44 -1.4
700,649 + MMP_RS03715 0.44 +0.0
700,649 + MMP_RS03715 0.44 -0.6
700,649 + MMP_RS03715 0.44 +0.3
700,653 - MMP_RS03715 0.45 +0.8
700,654 + MMP_RS03715 0.45 -1.6
700,654 + MMP_RS03715 0.45 +0.2
700,656 - MMP_RS03715 0.45 +1.0
700,674 + MMP_RS03715 0.48 +0.0
700,698 + MMP_RS03715 0.52 -1.0
700,698 + MMP_RS03715 0.52 +0.1
700,698 + MMP_RS03715 0.52 -0.3
700,811 + MMP_RS03715 0.71 +0.5
700,838 - MMP_RS03715 0.76 -1.2
700,934 + -2.0
700,938 + -0.8
700,938 + -0.2
700,944 + -1.3
701,022 + -0.7
701,022 + -0.7
701,056 + -0.1
701,060 - +0.4
701,064 - -0.4
701,073 - -1.6
701,337 + +0.6
701,480 - MMP_RS03720 0.12 +0.5
701,553 - MMP_RS03720 0.15 +0.4
701,553 - MMP_RS03720 0.15 -0.2
701,554 + MMP_RS03720 0.15 -1.2
701,612 + MMP_RS03720 0.17 -0.5
701,618 - MMP_RS03720 0.17 -0.9
701,891 - MMP_RS03720 0.27 -0.0
701,896 + MMP_RS03720 0.27 -0.5
701,906 - MMP_RS03720 0.28 +0.8
701,906 - MMP_RS03720 0.28 +0.2
701,918 - MMP_RS03720 0.28 +0.7
702,017 - MMP_RS03720 0.32 -0.7
702,017 - MMP_RS03720 0.32 -0.6
702,065 - MMP_RS03720 0.33 +1.4
702,111 - MMP_RS03720 0.35 +0.7
702,135 + MMP_RS03720 0.36 +0.7
702,219 - MMP_RS03720 0.39 -1.6
702,272 - MMP_RS03720 0.41 -0.5
702,273 + MMP_RS03720 0.41 +0.7
702,294 - MMP_RS03720 0.41 -0.7
702,295 + MMP_RS03720 0.42 -0.8
702,350 + MMP_RS03720 0.44 -1.2
702,405 - MMP_RS03720 0.45 -0.6
702,405 - MMP_RS03720 0.45 -0.6
702,405 - MMP_RS03720 0.45 -0.4
702,821 + MMP_RS03720 0.60 +0.5
703,011 - MMP_RS03720 0.67 +0.4
703,179 - MMP_RS03720 0.73 -0.1
703,255 + MMP_RS03720 0.76 +0.2
703,255 + MMP_RS03720 0.76 -0.6
703,310 + MMP_RS03720 0.78 -0.9
703,417 + MMP_RS03720 0.82 -1.3
703,419 + MMP_RS03720 0.82 -0.5
703,604 + MMP_RS03720 0.89 +0.6
703,652 + -0.7
703,861 - -0.3
703,863 - +0.0
703,926 - +1.8
703,990 - +0.4
703,990 - +0.5
704,202 + MMP_RS03725 0.26 -0.7
704,202 + MMP_RS03725 0.26 +0.6
704,248 + MMP_RS03725 0.30 -0.5
704,248 + MMP_RS03725 0.30 +0.3
704,248 + MMP_RS03725 0.30 -1.1
704,248 + MMP_RS03725 0.30 -0.6
704,248 + MMP_RS03725 0.30 -0.2
704,252 + MMP_RS03725 0.30 -0.5
704,252 + MMP_RS03725 0.30 -1.1
704,292 + MMP_RS03725 0.34 +2.1
704,364 + MMP_RS03725 0.41 +1.0
704,364 + MMP_RS03725 0.41 -0.1
704,412 - MMP_RS03725 0.46 +0.6
704,434 - MMP_RS03725 0.48 +1.1
704,434 - MMP_RS03725 0.48 -0.4
704,516 + MMP_RS03725 0.55 +0.7
704,632 + MMP_RS03725 0.66 +1.1
704,681 + MMP_RS03725 0.71 +0.5
704,696 + MMP_RS03725 0.72 -0.5
704,715 + MMP_RS03725 0.74 -0.9
704,791 + MMP_RS03725 0.81 +1.1
704,863 - MMP_RS03725 0.88 +0.1

Or see this region's nucleotide sequence