Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02305

Experiment: H2 deepwell acetate and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02295 and MMP_RS02300 are separated by 18 nucleotidesMMP_RS02300 and MMP_RS02305 are separated by 38 nucleotidesMMP_RS02305 and MMP_RS02310 are separated by 266 nucleotidesMMP_RS02310 and MMP_RS02315 are separated by 0 nucleotides MMP_RS02295: MMP_RS02295 - TatD family hydrolase, at 433,202 to 433,963 _RS02295 MMP_RS02300: MMP_RS02300 - NAD(P)H-dependent oxidoreductase, at 433,982 to 434,476 _RS02300 MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763 _RS02305 MMP_RS02310: MMP_RS02310 - RimK-like ATPgrasp N-terminal domain-containing protein, at 435,030 to 435,635 _RS02310 MMP_RS02315: MMP_RS02315 - RimK family alpha-L-glutamate ligase, at 435,636 to 436,586 _RS02315 Position (kb) 434 435Strain fitness (log2 ratio) -1 0 1at 433.635 kb on - strand, within MMP_RS02295at 433.677 kb on - strand, within MMP_RS02295at 433.707 kb on - strand, within MMP_RS02295at 433.800 kb on + strand, within MMP_RS02295at 433.825 kb on - strand, within MMP_RS02295at 433.826 kb on + strand, within MMP_RS02295at 433.831 kb on - strand, within MMP_RS02295at 433.831 kb on - strand, within MMP_RS02295at 433.832 kb on + strand, within MMP_RS02295at 433.852 kb on - strand, within MMP_RS02295at 433.852 kb on - strand, within MMP_RS02295at 433.853 kb on + strand, within MMP_RS02295at 433.854 kb on - strand, within MMP_RS02295at 433.855 kb on + strand, within MMP_RS02295at 433.855 kb on + strand, within MMP_RS02295at 433.855 kb on + strand, within MMP_RS02295at 433.855 kb on + strand, within MMP_RS02295at 433.855 kb on + strand, within MMP_RS02295at 433.930 kb on - strandat 433.933 kb on - strandat 433.933 kb on - strandat 433.947 kb on - strandat 433.961 kb on - strandat 433.979 kb on - strandat 433.981 kb on - strandat 434.007 kb on + strandat 434.007 kb on + strandat 434.009 kb on - strandat 434.033 kb on - strand, within MMP_RS02300at 434.199 kb on + strand, within MMP_RS02300at 434.207 kb on + strand, within MMP_RS02300at 434.208 kb on - strand, within MMP_RS02300at 434.332 kb on - strand, within MMP_RS02300at 434.449 kb on - strandat 434.449 kb on - strandat 434.456 kb on - strandat 434.457 kb on + strandat 434.457 kb on + strandat 434.474 kb on - strandat 434.532 kb on + strandat 434.535 kb on + strandat 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.572 kb on - strand, within MMP_RS02305at 434.653 kb on + strand, within MMP_RS02305at 434.665 kb on - strand, within MMP_RS02305at 434.679 kb on - strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.728 kb on + strand, within MMP_RS02305at 434.803 kb on - strandat 434.803 kb on - strandat 435.312 kb on - strand, within MMP_RS02310

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE
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433,635 - MMP_RS02295 0.57 +1.0
433,677 - MMP_RS02295 0.62 -0.6
433,707 - MMP_RS02295 0.66 -0.9
433,800 + MMP_RS02295 0.78 -0.3
433,825 - MMP_RS02295 0.82 -0.2
433,826 + MMP_RS02295 0.82 -0.3
433,831 - MMP_RS02295 0.83 +0.4
433,831 - MMP_RS02295 0.83 +1.3
433,832 + MMP_RS02295 0.83 +1.1
433,852 - MMP_RS02295 0.85 +0.2
433,852 - MMP_RS02295 0.85 -0.5
433,853 + MMP_RS02295 0.85 -0.5
433,854 - MMP_RS02295 0.86 +1.2
433,855 + MMP_RS02295 0.86 -0.6
433,855 + MMP_RS02295 0.86 -0.9
433,855 + MMP_RS02295 0.86 -0.7
433,855 + MMP_RS02295 0.86 +0.9
433,855 + MMP_RS02295 0.86 +0.1
433,930 - +0.0
433,933 - -0.3
433,933 - -0.5
433,947 - +0.5
433,961 - +0.5
433,979 - -0.6
433,981 - +0.1
434,007 + +0.2
434,007 + -0.6
434,009 - +1.4
434,033 - MMP_RS02300 0.10 +0.7
434,199 + MMP_RS02300 0.44 +1.0
434,207 + MMP_RS02300 0.45 +0.9
434,208 - MMP_RS02300 0.46 -0.0
434,332 - MMP_RS02300 0.71 +0.4
434,449 - +1.1
434,449 - -0.7
434,456 - -0.1
434,457 + +1.5
434,457 + +0.0
434,474 - -0.7
434,532 + -0.6
434,535 + -0.5
434,543 - MMP_RS02305 0.11 +0.4
434,543 - MMP_RS02305 0.11 +1.4
434,543 - MMP_RS02305 0.11 +0.5
434,543 - MMP_RS02305 0.11 +1.3
434,543 - MMP_RS02305 0.11 +0.8
434,543 - MMP_RS02305 0.11 -0.2
434,543 - MMP_RS02305 0.11 +1.2
434,543 - MMP_RS02305 0.11 +0.4
434,543 - MMP_RS02305 0.11 +0.3
434,544 + MMP_RS02305 0.12 +0.6
434,544 + MMP_RS02305 0.12 +1.1
434,544 + MMP_RS02305 0.12 +1.5
434,572 - MMP_RS02305 0.23 +0.5
434,653 + MMP_RS02305 0.55 +0.9
434,665 - MMP_RS02305 0.60 -0.6
434,679 - MMP_RS02305 0.66 +1.3
434,680 + MMP_RS02305 0.66 +0.1
434,680 + MMP_RS02305 0.66 +1.3
434,728 + MMP_RS02305 0.86 +0.7
434,803 - +1.0
434,803 - -1.2
435,312 - MMP_RS02310 0.47 +0.5

Or see this region's nucleotide sequence