Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16525

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
3,625,236	+		LRK54_RS16515	0.33	-0.7
3,625,236	+		LRK54_RS16515	0.33	+0.2
3,625,236	+		LRK54_RS16515	0.33	-0.0
3,625,237	-		LRK54_RS16515	0.33	-0.4
3,625,237	-		LRK54_RS16515	0.33	+0.8
3,625,328	+		LRK54_RS16515	0.43	-0.2
3,625,328	+		LRK54_RS16515	0.43	+1.2
3,625,328	+		LRK54_RS16515	0.43	-0.2
3,625,328	+		LRK54_RS16515	0.43	-0.1
3,625,328	+		LRK54_RS16515	0.43	-1.0
3,625,328	+		LRK54_RS16515	0.43	-0.9
3,625,328	+		LRK54_RS16515	0.43	-0.1
3,625,328	+		LRK54_RS16515	0.43	-0.5
3,625,328	+		LRK54_RS16515	0.43	+1.7
3,625,328	+		LRK54_RS16515	0.43	-0.7
3,625,328	+		LRK54_RS16515	0.43	-0.2
3,625,328	+		LRK54_RS16515	0.43	+1.4
3,625,328	+		LRK54_RS16515	0.43	-0.2
3,625,328	+		LRK54_RS16515	0.43	-0.6
3,625,328	+		LRK54_RS16515	0.43	-0.3
3,625,328	+		LRK54_RS16515	0.43	+2.9
3,625,328	+		LRK54_RS16515	0.43	+0.4
3,625,328	+		LRK54_RS16515	0.43	-1.7
3,625,328	+		LRK54_RS16515	0.43	-1.0
3,625,328	+		LRK54_RS16515	0.43	-0.0
3,625,328	+		LRK54_RS16515	0.43	-0.3
3,625,328	+		LRK54_RS16515	0.43	-2.2
3,625,328	+		LRK54_RS16515	0.43	+1.2
3,625,328	+		LRK54_RS16515	0.43	+1.0
3,625,328	+		LRK54_RS16515	0.43	+0.6
3,625,328	+		LRK54_RS16515	0.43	+0.2
3,625,328	+		LRK54_RS16515	0.43	-0.5
3,625,328	+		LRK54_RS16515	0.43	-0.8
3,625,328	+		LRK54_RS16515	0.43	-0.3
3,625,328	+		LRK54_RS16515	0.43	+2.2
3,625,328	+		LRK54_RS16515	0.43	-0.4
3,625,328	+		LRK54_RS16515	0.43	+2.2
3,625,328	+		LRK54_RS16515	0.43	+0.4
3,625,329	-		LRK54_RS16515	0.43	-0.1
3,625,329	-		LRK54_RS16515	0.43	-1.0
3,625,329	-		LRK54_RS16515	0.43	+0.3
3,625,329	-		LRK54_RS16515	0.43	-0.4
3,625,329	-		LRK54_RS16515	0.43	+0.6
3,625,329	-		LRK54_RS16515	0.43	+0.8
3,625,329	-		LRK54_RS16515	0.43	+0.2
3,625,329	-		LRK54_RS16515	0.43	-0.7
3,625,329	-		LRK54_RS16515	0.43	-0.4
3,625,329	-		LRK54_RS16515	0.43	+0.5
3,625,329	-		LRK54_RS16515	0.43	+1.2
3,625,329	-		LRK54_RS16515	0.43	-1.5
3,625,329	-		LRK54_RS16515	0.43	-2.0
3,625,329	-		LRK54_RS16515	0.43	-1.6
3,625,329	-		LRK54_RS16515	0.43	-0.2
3,625,329	-		LRK54_RS16515	0.43	+0.6
3,625,329	-		LRK54_RS16515	0.43	+1.9
3,625,329	-		LRK54_RS16515	0.43	-0.5
3,625,329	-		LRK54_RS16515	0.43	-0.2
3,625,329	-		LRK54_RS16515	0.43	-0.6
3,625,329	-		LRK54_RS16515	0.43	-1.6
3,625,329	-		LRK54_RS16515	0.43	-1.7
3,625,329	-		LRK54_RS16515	0.43	+0.5
3,625,329	-		LRK54_RS16515	0.43	+0.6
3,625,329	-		LRK54_RS16515	0.43	-1.0
3,625,329	-		LRK54_RS16515	0.43	+1.1
3,625,329	-		LRK54_RS16515	0.43	-1.6
3,625,329	-		LRK54_RS16515	0.43	+4.9
3,625,329	-		LRK54_RS16515	0.43	-0.6
3,625,329	-		LRK54_RS16515	0.43	+0.0
3,625,476	+		LRK54_RS16515	0.61	+0.4
3,625,476	+		LRK54_RS16515	0.61	-0.2
3,625,476	+		LRK54_RS16515	0.61	-0.8
3,625,476	+		LRK54_RS16515	0.61	-1.2
3,625,476	+		LRK54_RS16515	0.61	+1.0
3,625,476	+		LRK54_RS16515	0.61	+0.4
3,625,476	+		LRK54_RS16515	0.61	-0.4
3,625,476	+		LRK54_RS16515	0.61	+0.6
3,625,476	+		LRK54_RS16515	0.61	+0.8
3,625,476	+		LRK54_RS16515	0.61	+0.2
3,625,476	+		LRK54_RS16515	0.61	+0.3
3,625,476	+		LRK54_RS16515	0.61	-0.2
3,625,476	+		LRK54_RS16515	0.61	+0.2
3,625,476	+		LRK54_RS16515	0.61	-0.0
3,625,476	+		LRK54_RS16515	0.61	+1.1
3,625,477	-		LRK54_RS16515	0.61	-1.5
3,625,477	-		LRK54_RS16515	0.61	-1.4
3,625,477	-		LRK54_RS16515	0.61	-0.8
3,625,477	-		LRK54_RS16515	0.61	+0.4
3,625,477	-		LRK54_RS16515	0.61	-0.2
3,625,477	-		LRK54_RS16515	0.61	-1.0
3,625,477	-		LRK54_RS16515	0.61	+0.5
3,625,477	-		LRK54_RS16515	0.61	-0.8
3,625,477	-		LRK54_RS16515	0.61	+1.0
3,625,477	-		LRK54_RS16515	0.61	-1.0
3,625,477	-		LRK54_RS16515	0.61	-0.4
3,625,477	-		LRK54_RS16515	0.61	-0.4
3,625,688	+		LRK54_RS16515	0.85	-0.4
3,625,688	+		LRK54_RS16515	0.85	-0.2
3,625,688	+		LRK54_RS16515	0.85	-0.1
3,625,688	+		LRK54_RS16515	0.85	+0.6
3,625,688	+		LRK54_RS16515	0.85	+2.6
3,625,689	-		LRK54_RS16515	0.85	+0.1
3,625,689	-		LRK54_RS16515	0.85	+0.2
3,626,035	+		LRK54_RS16520	0.84	-0.8
3,626,035	+		LRK54_RS16520	0.84	-1.3
3,626,035	+		LRK54_RS16520	0.84	-0.6
3,626,035	+		LRK54_RS16520	0.84	-0.3
3,626,036	-		LRK54_RS16520	0.85	-0.4
3,626,036	-		LRK54_RS16520	0.85	-2.0
3,626,036	-		LRK54_RS16520	0.85	+2.2
3,626,036	-		LRK54_RS16520	0.85	+2.6
3,626,036	-		LRK54_RS16520	0.85	-0.2
3,626,036	-		LRK54_RS16520	0.85	+1.6
3,626,036	-		LRK54_RS16520	0.85	-1.0
3,626,036	-		LRK54_RS16520	0.85	+0.0
3,626,036	-		LRK54_RS16520	0.85	-0.2
3,626,036	-		LRK54_RS16520	0.85	-0.5
3,626,036	-		LRK54_RS16520	0.85	+0.2
3,626,036	-		LRK54_RS16520	0.85	-1.8
3,626,235	+				-0.4
3,626,235	+				-0.6
3,626,235	+				-1.2
3,626,235	+				-0.3
3,626,235	+				-0.3
3,626,235	+				+2.0
3,626,235	+				+0.6
3,626,235	+				+0.5
3,626,235	+				+0.4
3,626,235	+				-0.6
3,626,235	+				+1.2
3,626,235	+				+0.0
3,626,236	-				-0.4
3,626,236	-				-1.9
3,626,236	-				+0.7
3,626,298	+		LRK54_RS16525	0.19	-0.2
3,626,299	-		LRK54_RS16525	0.19	+1.2
3,626,451	+		LRK54_RS16525	0.40	+1.6
3,626,451	+		LRK54_RS16525	0.40	-0.2
3,626,451	+		LRK54_RS16525	0.40	-0.4
3,626,451	+		LRK54_RS16525	0.40	-0.4
3,626,451	+		LRK54_RS16525	0.40	-0.3
3,626,451	+		LRK54_RS16525	0.40	+1.6
3,626,451	+		LRK54_RS16525	0.40	+0.1
3,626,451	+		LRK54_RS16525	0.40	-0.5
3,626,452	-		LRK54_RS16525	0.41	-2.0
3,626,452	-		LRK54_RS16525	0.41	+0.6
3,626,452	-		LRK54_RS16525	0.41	-0.1
3,626,452	-		LRK54_RS16525	0.41	+0.6
3,626,452	-		LRK54_RS16525	0.41	-0.6
3,626,452	-		LRK54_RS16525	0.41	-1.0
3,626,452	-		LRK54_RS16525	0.41	+2.6
3,626,452	-		LRK54_RS16525	0.41	+1.8
3,626,452	-		LRK54_RS16525	0.41	+0.5
3,626,452	-		LRK54_RS16525	0.41	+1.4
3,626,452	-		LRK54_RS16525	0.41	-1.3
3,626,452	-		LRK54_RS16525	0.41	+1.0
3,626,595	+		LRK54_RS16525	0.61	-0.8
3,626,595	+		LRK54_RS16525	0.61	-0.3
3,626,595	+		LRK54_RS16525	0.61	+0.7
3,626,595	+		LRK54_RS16525	0.61	-0.6
3,626,596	-		LRK54_RS16525	0.61	+0.7
3,626,596	-		LRK54_RS16525	0.61	+0.3
3,626,596	-		LRK54_RS16525	0.61	+0.6
3,626,622	+		LRK54_RS16525	0.65	+0.7
3,626,622	+		LRK54_RS16525	0.65	-0.6
3,626,622	+		LRK54_RS16525	0.65	-0.6
3,626,622	+		LRK54_RS16525	0.65	+2.4
3,626,623	-		LRK54_RS16525	0.65	+2.6
3,626,623	-		LRK54_RS16525	0.65	+1.6
3,626,623	-		LRK54_RS16525	0.65	+0.5
3,626,623	-		LRK54_RS16525	0.65	+1.1
3,626,623	-		LRK54_RS16525	0.65	-0.6
3,626,700	+		LRK54_RS16525	0.76	+0.4
3,626,700	+		LRK54_RS16525	0.76	-0.9
3,626,700	+		LRK54_RS16525	0.76	-0.8
3,626,700	+		LRK54_RS16525	0.76	-0.2
3,626,700	+		LRK54_RS16525	0.76	-0.1
3,626,700	+		LRK54_RS16525	0.76	+0.1
3,626,700	+		LRK54_RS16525	0.76	-0.8
3,626,700	+		LRK54_RS16525	0.76	-0.0
3,626,700	+		LRK54_RS16525	0.76	-0.9
3,626,700	+		LRK54_RS16525	0.76	+2.6
3,626,700	+		LRK54_RS16525	0.76	-0.3
3,626,700	+		LRK54_RS16525	0.76	-1.6
3,626,700	+		LRK54_RS16525	0.76	+0.8
3,626,700	+		LRK54_RS16525	0.76	-1.0
3,626,700	+		LRK54_RS16525	0.76	+1.0
3,626,700	+		LRK54_RS16525	0.76	-1.1
3,626,700	+		LRK54_RS16525	0.76	+0.2
3,626,701	-		LRK54_RS16525	0.76	-1.1
3,626,701	-		LRK54_RS16525	0.76	-0.4
3,626,701	-		LRK54_RS16525	0.76	+0.1
3,626,701	-		LRK54_RS16525	0.76	-0.4
3,626,701	-		LRK54_RS16525	0.76	-0.3
3,626,701	-		LRK54_RS16525	0.76	-0.0
3,626,701	-		LRK54_RS16525	0.76	+1.2
3,626,701	-		LRK54_RS16525	0.76	-1.3
3,626,701	-		LRK54_RS16525	0.76	-0.4
3,626,701	-		LRK54_RS16525	0.76	-1.2
3,626,701	-		LRK54_RS16525	0.76	-1.0
3,626,701	-		LRK54_RS16525	0.76	-0.1
3,626,701	-		LRK54_RS16525	0.76	-0.8
3,626,701	-		LRK54_RS16525	0.76	+2.3
3,626,701	-		LRK54_RS16525	0.76	-1.4
3,626,701	-		LRK54_RS16525	0.76	+0.2
3,626,754	+		LRK54_RS16525	0.83	-1.8
3,626,754	+		LRK54_RS16525	0.83	-0.4
3,626,754	+		LRK54_RS16525	0.83	+1.0
3,626,755	-		LRK54_RS16525	0.84	-2.1
3,626,755	-		LRK54_RS16525	0.84	+0.6
3,626,755	-		LRK54_RS16525	0.84	-0.0
3,626,755	-		LRK54_RS16525	0.84	+0.2
3,626,755	-		LRK54_RS16525	0.84	-0.4
3,626,755	-		LRK54_RS16525	0.84	+0.9
3,626,755	-		LRK54_RS16525	0.84	+0.3
3,626,755	-		LRK54_RS16525	0.84	-0.8
3,626,755	-		LRK54_RS16525	0.84	+1.1
3,626,778	+		LRK54_RS16525	0.87	+0.8
3,626,778	+		LRK54_RS16525	0.87	+0.9
3,626,779	-		LRK54_RS16525	0.87	-0.0
3,626,779	-		LRK54_RS16525	0.87	+0.3
3,626,918	+				+0.5
3,626,919	-				+1.1
3,627,378	+		LRK54_RS16530	0.44	-0.9
3,627,378	+		LRK54_RS16530	0.44	+0.2
3,627,378	+		LRK54_RS16530	0.44	-1.1
3,627,378	+		LRK54_RS16530	0.44	+1.0
3,627,378	+		LRK54_RS16530	0.44	-0.3
3,627,378	+		LRK54_RS16530	0.44	-0.0
3,627,378	+		LRK54_RS16530	0.44	+0.1
3,627,378	+		LRK54_RS16530	0.44	+0.5
3,627,378	+		LRK54_RS16530	0.44	+0.6
3,627,378	+		LRK54_RS16530	0.44	-0.7
3,627,378	+		LRK54_RS16530	0.44	+0.6
3,627,378	+		LRK54_RS16530	0.44	-0.2
3,627,379	-		LRK54_RS16530	0.45	-2.5
3,627,379	-		LRK54_RS16530	0.45	-0.5
3,627,379	-		LRK54_RS16530	0.45	-0.4
3,627,379	-		LRK54_RS16530	0.45	+0.6
3,627,379	-		LRK54_RS16530	0.45	-1.4
3,627,379	-		LRK54_RS16530	0.45	+0.6
3,627,379	-		LRK54_RS16530	0.45	-0.8
3,627,501	+		LRK54_RS16530	0.56	+0.5
3,627,501	+		LRK54_RS16530	0.56	+0.0
3,627,501	+		LRK54_RS16530	0.56	+1.0
3,627,501	+		LRK54_RS16530	0.56	+0.1
3,627,501	+		LRK54_RS16530	0.56	-0.6
3,627,501	+		LRK54_RS16530	0.56	-0.4
3,627,501	+		LRK54_RS16530	0.56	-0.8
3,627,501	+		LRK54_RS16530	0.56	-0.4
3,627,501	+		LRK54_RS16530	0.56	-0.0
3,627,502	-		LRK54_RS16530	0.56	+3.6
3,627,502	-		LRK54_RS16530	0.56	+0.6
3,627,502	-		LRK54_RS16530	0.56	-1.8
3,627,502	-		LRK54_RS16530	0.56	-0.5
3,627,502	-		LRK54_RS16530	0.56	-0.0
3,627,502	-		LRK54_RS16530	0.56	-1.8