Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16400

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
3,605,093	+		LRK54_RS16395	0.39	+0.5
3,605,093	+		LRK54_RS16395	0.39	-1.4
3,605,093	+		LRK54_RS16395	0.39	+0.1
3,605,094	-		LRK54_RS16395	0.39	+0.8
3,605,171	+		LRK54_RS16395	0.44	-0.8
3,605,171	+		LRK54_RS16395	0.44	+0.1
3,605,171	+		LRK54_RS16395	0.44	+0.6
3,605,171	+		LRK54_RS16395	0.44	+0.6
3,605,171	+		LRK54_RS16395	0.44	-0.6
3,605,171	+		LRK54_RS16395	0.44	+1.2
3,605,171	+		LRK54_RS16395	0.44	+0.9
3,605,171	+		LRK54_RS16395	0.44	-0.8
3,605,171	+		LRK54_RS16395	0.44	-0.6
3,605,171	+		LRK54_RS16395	0.44	-1.0
3,605,172	-		LRK54_RS16395	0.44	+0.6
3,605,172	-		LRK54_RS16395	0.44	+1.6
3,605,172	-		LRK54_RS16395	0.44	-0.2
3,605,172	-		LRK54_RS16395	0.44	+0.6
3,605,172	-		LRK54_RS16395	0.44	+0.8
3,605,172	-		LRK54_RS16395	0.44	-0.3
3,605,172	-		LRK54_RS16395	0.44	-0.8
3,605,172	-		LRK54_RS16395	0.44	+0.8
3,605,172	-		LRK54_RS16395	0.44	+0.8
3,605,173	-		LRK54_RS16395	0.44	-0.2
3,605,315	+		LRK54_RS16395	0.54	+1.0
3,605,316	-		LRK54_RS16395	0.55	-1.2
3,605,316	-		LRK54_RS16395	0.55	+0.3
3,605,339	+		LRK54_RS16395	0.56	-0.0
3,605,339	+		LRK54_RS16395	0.56	-0.1
3,605,339	+		LRK54_RS16395	0.56	+0.6
3,605,339	+		LRK54_RS16395	0.56	+0.0
3,605,339	+		LRK54_RS16395	0.56	+2.3
3,605,339	+		LRK54_RS16395	0.56	-0.8
3,605,339	+		LRK54_RS16395	0.56	-1.1
3,605,339	+		LRK54_RS16395	0.56	+1.6
3,605,339	+		LRK54_RS16395	0.56	+0.6
3,605,339	+		LRK54_RS16395	0.56	-0.2
3,605,339	+		LRK54_RS16395	0.56	-0.0
3,605,339	+		LRK54_RS16395	0.56	+0.1
3,605,340	-		LRK54_RS16395	0.56	+1.3
3,605,340	-		LRK54_RS16395	0.56	-0.2
3,605,340	-		LRK54_RS16395	0.56	-1.2
3,605,340	-		LRK54_RS16395	0.56	+3.2
3,605,340	-		LRK54_RS16395	0.56	-1.1
3,605,340	-		LRK54_RS16395	0.56	-0.2
3,605,340	-		LRK54_RS16395	0.56	+0.2
3,605,340	-		LRK54_RS16395	0.56	+0.5
3,605,340	-		LRK54_RS16395	0.56	-1.4
3,605,340	-		LRK54_RS16395	0.56	-0.4
3,605,340	-		LRK54_RS16395	0.56	-1.8
3,605,432	+		LRK54_RS16395	0.63	+0.0
3,605,432	+		LRK54_RS16395	0.63	+1.8
3,605,432	+		LRK54_RS16395	0.63	+0.3
3,605,432	+		LRK54_RS16395	0.63	-1.8
3,605,432	+		LRK54_RS16395	0.63	+1.2
3,605,432	+		LRK54_RS16395	0.63	-1.0
3,605,432	+		LRK54_RS16395	0.63	+1.0
3,605,432	+		LRK54_RS16395	0.63	-0.6
3,605,432	+		LRK54_RS16395	0.63	+1.2
3,605,432	+		LRK54_RS16395	0.63	+0.2
3,605,433	-		LRK54_RS16395	0.63	+0.7
3,605,433	-		LRK54_RS16395	0.63	-1.2
3,605,433	-		LRK54_RS16395	0.63	-0.8
3,605,433	-		LRK54_RS16395	0.63	+0.1
3,605,433	-		LRK54_RS16395	0.63	-0.4
3,605,433	-		LRK54_RS16395	0.63	+1.6
3,605,433	-		LRK54_RS16395	0.63	-1.2
3,605,433	-		LRK54_RS16395	0.63	+0.5
3,605,433	-		LRK54_RS16395	0.63	+0.4
3,605,702	+		LRK54_RS16395	0.82	-0.5
3,605,702	+		LRK54_RS16395	0.82	-0.6
3,605,702	+		LRK54_RS16395	0.82	-0.8
3,605,702	+		LRK54_RS16395	0.82	+0.9
3,605,703	-		LRK54_RS16395	0.82	-0.5
3,605,703	-		LRK54_RS16395	0.82	-0.1
3,605,703	-		LRK54_RS16395	0.82	+0.6
3,605,703	-		LRK54_RS16395	0.82	-0.4
3,605,729	+		LRK54_RS16395	0.84	+0.7
3,605,729	+		LRK54_RS16395	0.84	+0.3
3,605,729	+		LRK54_RS16395	0.84	+0.5
3,605,729	+		LRK54_RS16395	0.84	-0.8
3,605,729	+		LRK54_RS16395	0.84	-1.8
3,605,729	+		LRK54_RS16395	0.84	-0.1
3,605,729	+		LRK54_RS16395	0.84	-1.2
3,605,729	+		LRK54_RS16395	0.84	+0.9
3,605,729	+		LRK54_RS16395	0.84	+0.2
3,605,729	+		LRK54_RS16395	0.84	-0.0
3,605,729	+		LRK54_RS16395	0.84	-1.0
3,605,730	-		LRK54_RS16395	0.84	-1.0
3,605,730	-		LRK54_RS16395	0.84	+0.8
3,605,730	-		LRK54_RS16395	0.84	-1.2
3,605,730	-		LRK54_RS16395	0.84	-1.1
3,605,730	-		LRK54_RS16395	0.84	+0.4
3,605,730	-		LRK54_RS16395	0.84	+0.4
3,605,801	+		LRK54_RS16395	0.89	-0.2
3,605,801	+		LRK54_RS16395	0.89	+2.9
3,605,801	+		LRK54_RS16395	0.89	-0.2
3,605,801	+		LRK54_RS16395	0.89	-0.8
3,605,802	-		LRK54_RS16395	0.90	+0.4
3,605,802	-		LRK54_RS16395	0.90	-0.4
3,605,802	-		LRK54_RS16395	0.90	+0.3
3,605,802	-		LRK54_RS16395	0.90	+0.1
3,605,802	-		LRK54_RS16395	0.90	-0.9
3,605,802	-		LRK54_RS16395	0.90	+0.3
3,605,935	+				+0.7
3,605,935	+				-1.4
3,605,935	+				-0.8
3,605,935	+				+1.8
3,605,935	+				+0.4
3,605,935	+				+2.8
3,605,935	+				-0.1
3,605,935	+				+2.0
3,605,935	+				+0.0
3,605,936	-				+1.8
3,605,936	-				-0.8
3,605,936	-				+0.3
3,605,936	-				+1.6
3,605,936	-				+0.6
3,605,936	-				-0.4
3,605,936	-				+0.7
3,605,985	+				+0.8
3,605,985	+				-0.4
3,605,985	+				-2.0
3,605,985	+				-0.6
3,605,985	+				-0.0
3,605,985	+				-0.8
3,605,985	+				-2.3
3,605,985	+				-0.0
3,605,985	+				-1.8
3,605,985	+				+1.1
3,605,985	+				+0.3
3,605,985	+				+0.8
3,605,985	+				-0.8
3,605,985	+				-0.2
3,605,985	+				+1.6
3,605,985	+				+0.6
3,605,985	+				+1.0
3,605,985	+				-1.0
3,605,985	+				-2.3
3,605,985	+				-0.2
3,605,985	+				+0.2
3,605,985	+				+2.6
3,605,986	-				-0.4
3,605,986	-				-1.2
3,605,986	-				-1.8
3,605,986	-				+0.5
3,605,986	-				+0.6
3,605,986	-				+0.2
3,605,986	-				+1.8
3,605,986	-				-0.5
3,605,986	-				-0.8
3,605,986	-				-0.8
3,605,986	-				+0.6
3,605,986	-				+0.4
3,605,986	-				+0.7
3,605,986	-				-1.0
3,605,986	-				-2.5
3,605,986	-				+0.3
3,605,986	-				-0.4
3,605,986	-				-1.0
3,605,987	+				-0.9
3,605,987	+				+1.2
3,605,987	+				-1.3
3,605,987	+				-0.8
3,605,987	+				+0.2
3,605,987	+				-0.6
3,605,988	-				-1.2
3,605,988	-				-0.5
3,605,988	-				-1.6
3,605,988	-				-2.3
3,605,988	-				-1.7
3,605,988	-				-0.4
3,605,988	-				-2.0
3,606,065	+				+0.5
3,606,065	+				+0.5
3,606,066	-				-0.2
3,606,066	-				+0.5
3,606,066	-				+0.1
3,606,066	-				+0.9
3,606,068	+				+2.6
3,606,068	+				-0.6
3,606,069	-				-1.8
3,606,069	-				+1.6
3,606,069	-				+0.5
3,606,069	-				+0.2
3,606,085	+				+0.2
3,606,085	+				+1.6
3,606,085	+				-0.2
3,606,085	+				+1.7
3,606,085	+				-0.0
3,606,085	+				+2.1
3,606,085	+				-0.8
3,606,085	+				-0.3
3,606,086	-				+0.2
3,606,086	-				-0.2
3,606,086	-				-0.1
3,606,086	-				+1.1
3,606,086	-				+0.6
3,606,086	-				-1.2
3,606,086	-				-0.8
3,606,086	-				-0.4
3,606,086	-				-0.8
3,606,086	-				-2.1
3,606,086	-				-0.0
3,606,086	-				-0.3
3,606,086	-				+0.3
3,606,086	-				+0.3
3,606,086	-				-0.0
3,606,086	-				-0.0
3,606,133	+				-0.5
3,606,133	+				+1.2
3,606,133	+				+0.8
3,606,134	-				+1.2
3,606,134	-				+1.1
3,606,134	-				+1.3
3,606,134	-				+0.9
3,606,134	-				-0.8
3,606,163	+		LRK54_RS16400	0.12	-1.6
3,606,163	+		LRK54_RS16400	0.12	-0.6
3,606,163	+		LRK54_RS16400	0.12	-1.2
3,606,163	+		LRK54_RS16400	0.12	+2.3
3,606,163	+		LRK54_RS16400	0.12	-1.4
3,606,163	+		LRK54_RS16400	0.12	-0.3
3,606,163	+		LRK54_RS16400	0.12	+0.3
3,606,163	+		LRK54_RS16400	0.12	-0.1
3,606,164	-		LRK54_RS16400	0.12	-1.4
3,606,164	-		LRK54_RS16400	0.12	+0.6
3,606,164	-		LRK54_RS16400	0.12	-0.3
3,606,164	-		LRK54_RS16400	0.12	-2.4
3,606,544	+		LRK54_RS16400	0.71	+0.1
3,606,544	+		LRK54_RS16400	0.71	-1.5
3,606,544	+		LRK54_RS16400	0.71	-0.8
3,606,544	+		LRK54_RS16400	0.71	-0.3
3,606,544	+		LRK54_RS16400	0.71	+0.6
3,606,544	+		LRK54_RS16400	0.71	+0.9
3,606,544	+		LRK54_RS16400	0.71	-1.8
3,606,544	+		LRK54_RS16400	0.71	-0.9
3,606,544	+		LRK54_RS16400	0.71	+1.7
3,606,545	-		LRK54_RS16400	0.71	+0.8
3,606,545	-		LRK54_RS16400	0.71	-0.2
3,606,545	-		LRK54_RS16400	0.71	-0.3
3,606,545	-		LRK54_RS16400	0.71	-1.2
3,606,545	-		LRK54_RS16400	0.71	-0.8
3,606,545	-		LRK54_RS16400	0.71	-1.3
3,606,545	-		LRK54_RS16400	0.71	-0.8
3,606,625	+		LRK54_RS16400	0.84	+2.2
3,606,625	+		LRK54_RS16400	0.84	-1.0
3,606,626	-		LRK54_RS16400	0.84	+0.2
3,606,626	-		LRK54_RS16400	0.84	+0.2
3,606,626	-		LRK54_RS16400	0.84	-0.6
3,606,626	-		LRK54_RS16400	0.84	+0.6
3,606,626	-		LRK54_RS16400	0.84	-1.4
3,606,626	-		LRK54_RS16400	0.84	-1.8
3,606,626	-		LRK54_RS16400	0.84	-0.4
3,606,626	-		LRK54_RS16400	0.84	-0.5
3,607,054	-		LRK54_RS16405	0.50	+0.8
3,607,228	+		LRK54_RS16405	0.86	-1.2
3,607,228	+		LRK54_RS16405	0.86	+0.6
3,607,228	+		LRK54_RS16405	0.86	-0.2
3,607,228	+		LRK54_RS16405	0.86	-0.3
3,607,228	+		LRK54_RS16405	0.86	-0.0
3,607,228	+		LRK54_RS16405	0.86	+0.2
3,607,229	-		LRK54_RS16405	0.87	+0.9
3,607,229	-		LRK54_RS16405	0.87	-0.3
3,607,229	-		LRK54_RS16405	0.87	-0.4
3,607,229	-		LRK54_RS16405	0.87	-0.5
3,607,229	-		LRK54_RS16405	0.87	-0.8
3,607,229	-		LRK54_RS16405	0.87	-0.3
3,607,229	-		LRK54_RS16405	0.87	+1.0
3,607,229	-		LRK54_RS16405	0.87	+0.4
3,607,229	-		LRK54_RS16405	0.87	-0.5
3,607,229	-		LRK54_RS16405	0.87	-1.9
3,607,261	+				-0.1
3,607,261	+				+0.8
3,607,262	-				+1.3
3,607,262	-				-0.4
3,607,262	-				+1.0
3,607,262	-				-1.8
3,607,422	+				-0.2
3,607,422	+				-0.2
3,607,422	+				+0.2
3,607,422	+				-1.9
3,607,422	+				+0.9
3,607,422	+				-0.8
3,607,422	+				+0.2
3,607,422	+				-0.2
3,607,422	+				-0.0
3,607,422	+				-1.1
3,607,422	+				+0.6
3,607,422	+				+0.2
3,607,422	+				+1.6
3,607,423	-				+0.0
3,607,423	-				+0.3
3,607,423	-				-0.5
3,607,423	-				+0.9
3,607,423	-				-0.9
3,607,423	-				-1.4
3,607,423	-				+0.6
3,607,423	-				+1.8
3,607,423	-				-0.6
3,607,423	-				-0.4
3,607,423	-				-1.6
3,607,423	-				-0.8
3,607,423	-				-0.4
3,607,423	-				+1.0
3,607,423	-				-2.8
3,607,491	+				+0.2
3,607,491	+				+0.5
3,607,492	-				-0.3
3,607,492	-				-0.5
3,607,492	-				-0.4
3,607,568	+		LRK54_RS16410	0.16	-0.0
3,607,568	+		LRK54_RS16410	0.16	-0.6
3,607,568	+		LRK54_RS16410	0.16	+0.5
3,607,568	+		LRK54_RS16410	0.16	+1.6
3,607,568	+		LRK54_RS16410	0.16	-0.6
3,607,568	+		LRK54_RS16410	0.16	+0.7
3,607,568	+		LRK54_RS16410	0.16	+0.2
3,607,569	-		LRK54_RS16410	0.17	+0.1
3,607,569	-		LRK54_RS16410	0.17	+0.7
3,607,569	-		LRK54_RS16410	0.17	-1.4
3,607,569	-		LRK54_RS16410	0.17	+1.8
3,607,569	-		LRK54_RS16410	0.17	+0.2
3,607,569	-		LRK54_RS16410	0.17	-0.2
3,607,569	-		LRK54_RS16410	0.17	-0.2
3,607,569	-		LRK54_RS16410	0.17	-0.1