Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11680

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
2,592,104	+		LRK54_RS11670	0.18	+1.0
2,592,105	-		LRK54_RS11670	0.18	+0.4
2,592,173	+		LRK54_RS11670	0.29	+0.5
2,592,173	+		LRK54_RS11670	0.29	-0.7
2,592,173	+		LRK54_RS11670	0.29	+1.6
2,592,173	+		LRK54_RS11670	0.29	-0.3
2,592,173	+		LRK54_RS11670	0.29	+0.8
2,592,174	-		LRK54_RS11670	0.30	-0.9
2,592,174	-		LRK54_RS11670	0.30	+0.0
2,592,174	-		LRK54_RS11670	0.30	-0.0
2,592,174	-		LRK54_RS11670	0.30	+0.0
2,592,174	-		LRK54_RS11670	0.30	+0.3
2,592,174	-		LRK54_RS11670	0.30	-0.2
2,592,174	-		LRK54_RS11670	0.30	+0.6
2,592,174	-		LRK54_RS11670	0.30	+0.6
2,592,174	-		LRK54_RS11670	0.30	-0.2
2,592,174	-		LRK54_RS11670	0.30	-0.6
2,592,174	-		LRK54_RS11670	0.30	+0.0
2,592,174	-		LRK54_RS11670	0.30	-0.4
2,592,174	-		LRK54_RS11670	0.30	+0.3
2,592,174	-		LRK54_RS11670	0.30	-2.0
2,592,176	+		LRK54_RS11670	0.30	-0.4
2,592,176	+		LRK54_RS11670	0.30	-0.7
2,592,176	+		LRK54_RS11670	0.30	-0.8
2,592,177	-		LRK54_RS11670	0.30	+0.6
2,592,177	-		LRK54_RS11670	0.30	-0.4
2,592,177	-		LRK54_RS11670	0.30	+0.4
2,592,177	-		LRK54_RS11670	0.30	-0.6
2,592,446	+		LRK54_RS11670	0.74	+0.1
2,592,473	+		LRK54_RS11670	0.79	+0.4
2,592,473	+		LRK54_RS11670	0.79	+0.0
2,592,473	+		LRK54_RS11670	0.79	-1.0
2,592,473	+		LRK54_RS11670	0.79	-1.0
2,592,473	+		LRK54_RS11670	0.79	-0.3
2,592,473	+		LRK54_RS11670	0.79	+0.5
2,592,473	+		LRK54_RS11670	0.79	+0.3
2,592,474	-		LRK54_RS11670	0.79	+1.0
2,592,474	-		LRK54_RS11670	0.79	+0.7
2,592,474	-		LRK54_RS11670	0.79	+1.3
2,592,474	-		LRK54_RS11670	0.79	+1.2
2,592,474	-		LRK54_RS11670	0.79	+0.3
2,592,474	-		LRK54_RS11670	0.79	+0.8
2,592,474	-		LRK54_RS11670	0.79	+0.0
2,592,620	+				-0.4
2,592,620	+				-0.7
2,592,620	+				-0.1
2,592,620	+				-2.6
2,592,621	-				+0.0
2,592,621	-				-0.6
2,592,621	-				+1.6
2,592,621	-				-1.4
2,592,621	-				-0.5
2,592,621	-				-0.6
2,592,621	-				-0.6
2,592,621	-				+0.4
2,592,621	-				+0.3
2,592,621	-				+0.0
2,592,729	+				+0.6
2,592,729	+				+0.3
2,592,729	+				-2.0
2,592,729	+				-0.6
2,592,729	+				+0.0
2,592,729	+				-2.0
2,592,729	+				+1.2
2,592,729	+				-0.9
2,592,729	+				-1.2
2,592,729	+				-1.0
2,592,729	+				+1.2
2,592,729	+				-1.4
2,592,729	+				+0.0
2,592,729	+				-0.6
2,592,729	+				-1.2
2,592,729	+				-0.8
2,592,729	+				-0.2
2,592,729	+				+1.2
2,592,729	+				+0.0
2,592,729	+				-0.4
2,592,729	+				-0.7
2,592,729	+				+1.2
2,592,729	+				-2.3
2,592,729	+				+0.0
2,592,729	+				+1.3
2,592,729	+				+0.4
2,592,729	+				-0.7
2,592,729	+				+0.6
2,592,729	+				-1.3
2,592,729	+				+0.0
2,592,730	-				+1.6
2,592,730	-				+0.0
2,592,730	-				+0.4
2,592,730	-				+1.1
2,592,730	-				+1.6
2,592,730	-				-0.1
2,592,730	-				+0.3
2,592,730	-				+0.0
2,592,730	-				+0.8
2,592,730	-				-1.4
2,592,730	-				+0.4
2,592,730	-				-1.4
2,592,730	-				-0.2
2,592,730	-				-0.4
2,592,730	-				-0.4
2,592,730	-				+1.0
2,592,730	-				-0.4
2,592,730	-				-0.0
2,592,730	-				-0.8
2,592,730	-				-0.9
2,592,730	-				+0.3
2,592,730	-				-1.4
2,592,730	-				-0.7
2,592,730	-				-2.1
2,592,730	-				-0.8
2,592,730	-				-1.9
2,592,730	-				-1.0
2,592,730	-				+0.1
2,592,730	-				+0.2
2,592,730	-				-0.2
2,592,730	-				-0.7
2,592,730	-				+0.6
2,592,730	-				+0.8
2,592,730	-				-0.5
2,592,730	-				+0.9
2,592,730	-				+0.3
2,592,730	-				-0.9
2,592,730	-				-0.5
2,592,730	-				-0.9
2,592,798	+				-1.3
2,592,799	+				-1.4
2,592,799	+				-0.4
2,592,800	-				-0.4
2,592,800	-				+0.3
2,592,800	-				-0.1
2,592,800	-				+0.9
2,592,803	+				-0.7
2,592,803	+				-0.5
2,592,803	+				-1.4
2,592,804	-				-0.6
2,592,804	-				-0.8
2,592,804	-				+2.6
2,592,804	-				-0.4
2,592,804	-				-1.1
2,592,804	-				+0.1
2,592,804	-				-0.7
2,592,804	-				+0.2
2,592,804	-				-1.7
2,592,804	-				+0.6
2,592,804	-				+1.6
2,592,804	-				+0.3
2,592,804	-				-0.2
2,592,820	+				-0.7
2,592,820	+				+0.3
2,592,820	+				-1.0
2,592,820	+				-2.1
2,592,820	+				+1.6
2,592,820	+				-0.8
2,592,820	+				+0.0
2,592,820	+				+0.0
2,592,820	+				-0.7
2,592,820	+				-0.3
2,592,820	+				-1.4
2,592,820	+				+0.2
2,592,820	+				+0.6
2,592,820	+				+1.6
2,592,820	+				-1.2
2,592,820	+				+0.6
2,592,820	+				-0.6
2,592,820	+				-0.7
2,592,821	-				-0.4
2,592,821	-				-0.4
2,592,821	-				-0.8
2,592,821	-				+0.0
2,592,821	-				+1.0
2,592,821	-				-0.3
2,592,821	-				+1.6
2,592,821	-				+0.2
2,592,821	-				+0.0
2,592,821	-				-1.2
2,592,821	-				-0.2
2,592,821	-				-0.4
2,592,821	-				+0.4
2,592,821	-				-0.8
2,592,821	-				-0.7
2,592,821	-				-0.6
2,592,821	-				-0.3
2,592,821	-				-1.0
2,592,821	-				-0.7
2,592,821	-				-0.2
2,592,821	-				+0.2
2,592,821	-				+0.0
2,592,821	-				-0.1
2,592,821	-				+0.0
2,592,865	+				-2.1
2,592,865	+				-0.5
2,592,865	+				+1.6
2,592,865	+				-3.4
2,592,865	+				+0.2
2,592,866	-				+0.4
2,592,866	-				+0.6
2,592,866	-				+0.4
2,592,930	+				-0.6
2,592,930	+				+0.3
2,592,930	+				+0.0
2,592,931	-				-1.6
2,593,012	+		LRK54_RS11680	0.27	-1.0
2,593,014	+		LRK54_RS11680	0.28	-1.7
2,593,014	+		LRK54_RS11680	0.28	-1.4
2,593,014	+		LRK54_RS11680	0.28	-0.9
2,593,014	+		LRK54_RS11680	0.28	-2.5
2,593,014	+		LRK54_RS11680	0.28	-4.0
2,593,014	+		LRK54_RS11680	0.28	-0.4
2,593,014	+		LRK54_RS11680	0.28	-1.9
2,593,014	+		LRK54_RS11680	0.28	+0.0
2,593,014	+		LRK54_RS11680	0.28	-3.9
2,593,015	-		LRK54_RS11680	0.28	-2.8
2,593,015	-		LRK54_RS11680	0.28	-2.3
2,593,015	-		LRK54_RS11680	0.28	-3.4
2,593,244	+				-1.6
2,593,244	+				-1.5
2,593,244	+				-2.3
2,593,244	+				-3.4
2,593,244	+				-2.8
2,593,244	+				-2.1
2,593,244	+				-1.0
2,593,244	+				-1.4
2,593,244	+				-0.7
2,593,244	+				-3.2
2,593,244	+				+1.2
2,593,244	+				-2.1
2,593,244	+				-1.4
2,593,244	+				-2.6
2,593,244	+				-1.4
2,593,244	+				-2.1
2,593,244	+				-2.8
2,593,245	-				-3.6
2,593,245	-				-1.6
2,593,245	-				-1.9
2,593,245	-				-1.5
2,593,245	-				-1.7
2,593,245	-				+0.6
2,593,245	-				+1.3
2,593,245	-				-1.6
2,593,245	-				-1.4
2,593,245	-				+0.5
2,593,245	-				-2.9
2,593,245	-				-1.6
2,593,245	-				-1.6
2,593,245	-				+0.0
2,593,245	-				-0.6
2,593,245	-				-0.3
2,593,495	+				-0.7
2,593,496	-				-3.2
2,593,496	-				-1.0
2,593,496	-				-1.1
2,593,496	-				-0.6
2,593,496	-				+0.8
2,593,496	-				+0.4
2,593,496	-				-0.3
2,593,496	-				+0.6
2,593,496	-				+0.8
2,593,496	-				-1.0
2,593,496	-				-1.2
2,593,496	-				-1.7
2,593,496	-				-0.4
2,593,496	-				-0.2
2,593,496	-				-0.8
2,593,496	-				+0.6
2,593,496	-				+1.3
2,593,496	-				+1.0
2,593,496	-				+0.4
2,593,497	+				-0.0
2,593,497	+				+0.6
2,593,497	+				-1.6
2,593,497	+				+0.4
2,593,497	+				+0.3
2,593,497	+				+1.2
2,593,498	-				+0.7
2,593,498	-				+0.6
2,593,498	-				-0.4
2,593,498	-				+1.6
2,593,498	-				+0.7
2,593,498	-				-1.6
2,593,562	+				-1.4
2,593,562	+				-0.0
2,593,562	+				+1.6
2,593,563	-				+2.3
2,593,563	-				-0.3
2,593,563	-				-1.0
2,593,563	-				+0.9
2,593,563	-				-0.0
2,593,563	-				+0.7
2,593,563	-				+1.4
2,593,563	-				-1.0
2,593,577	+				-1.9
2,593,577	+				-0.7
2,593,577	+				-0.1
2,593,577	+				-0.0
2,593,577	+				-1.6
2,593,577	+				-0.4
2,593,578	-				-0.8
2,593,578	-				+0.3
2,593,578	-				-0.6
2,593,578	-				+0.4
2,593,578	-				-0.2
2,593,578	-				-1.9
2,593,578	-				+0.8
2,593,698	+		LRK54_RS11690	0.18	-0.2
2,593,698	+		LRK54_RS11690	0.18	-0.1
2,593,698	+		LRK54_RS11690	0.18	-0.5
2,593,698	+		LRK54_RS11690	0.18	-0.9
2,593,698	+		LRK54_RS11690	0.18	-1.6
2,593,699	-		LRK54_RS11690	0.18	-2.3