Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11190

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
2,486,082	-		LRK54_RS11180	0.75	-2.0
2,486,082	-		LRK54_RS11180	0.75	+0.6
2,486,279	+		LRK54_RS11180	0.88	-0.1
2,486,279	+		LRK54_RS11180	0.88	-1.2
2,486,280	-		LRK54_RS11180	0.88	+0.0
2,486,510	+				+0.4
2,486,510	+				-0.4
2,486,510	+				-1.4
2,486,510	+				+0.0
2,486,510	+				+0.1
2,486,510	+				+1.2
2,486,510	+				+0.6
2,486,511	-				+0.1
2,486,511	-				+0.4
2,486,511	-				+0.2
2,486,511	-				-0.7
2,486,511	-				+0.9
2,486,511	-				-0.2
2,486,511	-				-0.3
2,486,511	-				+0.0
2,486,511	-				+0.0
2,486,511	-				-0.0
2,486,511	-				-0.2
2,486,511	-				-1.0
2,486,511	-				+0.4
2,486,737	+		LRK54_RS11185	0.37	-1.5
2,486,743	+		LRK54_RS11185	0.39	-1.0
2,486,743	+		LRK54_RS11185	0.39	-1.2
2,486,743	+		LRK54_RS11185	0.39	+0.2
2,486,743	+		LRK54_RS11185	0.39	+0.6
2,486,743	+		LRK54_RS11185	0.39	+0.6
2,486,743	+		LRK54_RS11185	0.39	+0.9
2,486,743	+		LRK54_RS11185	0.39	-0.1
2,486,743	+		LRK54_RS11185	0.39	+0.2
2,486,743	+		LRK54_RS11185	0.39	-0.3
2,486,743	+		LRK54_RS11185	0.39	+0.5
2,486,743	+		LRK54_RS11185	0.39	-1.3
2,486,743	+		LRK54_RS11185	0.39	+0.0
2,486,743	+		LRK54_RS11185	0.39	+2.0
2,486,743	+		LRK54_RS11185	0.39	-0.2
2,486,743	+		LRK54_RS11185	0.39	+2.1
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	+0.9
2,486,743	+		LRK54_RS11185	0.39	+0.5
2,486,743	+		LRK54_RS11185	0.39	+0.8
2,486,743	+		LRK54_RS11185	0.39	+0.3
2,486,743	+		LRK54_RS11185	0.39	+0.5
2,486,743	+		LRK54_RS11185	0.39	+0.0
2,486,743	+		LRK54_RS11185	0.39	-2.2
2,486,743	+		LRK54_RS11185	0.39	+0.3
2,486,743	+		LRK54_RS11185	0.39	+0.5
2,486,743	+		LRK54_RS11185	0.39	-0.2
2,486,743	+		LRK54_RS11185	0.39	+1.0
2,486,743	+		LRK54_RS11185	0.39	-2.8
2,486,743	+		LRK54_RS11185	0.39	+0.1
2,486,744	-		LRK54_RS11185	0.39	-1.0
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	+0.7
2,486,744	-		LRK54_RS11185	0.39	+0.0
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	+0.3
2,486,744	-		LRK54_RS11185	0.39	-0.8
2,486,744	-		LRK54_RS11185	0.39	+3.2
2,486,744	-		LRK54_RS11185	0.39	+0.9
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	-0.4
2,486,744	-		LRK54_RS11185	0.39	-1.7
2,486,744	-		LRK54_RS11185	0.39	+1.2
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	+1.6
2,486,744	-		LRK54_RS11185	0.39	-0.0
2,486,744	-		LRK54_RS11185	0.39	-1.4
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	-0.5
2,486,744	-		LRK54_RS11185	0.39	-0.4
2,486,744	-		LRK54_RS11185	0.39	-1.0
2,486,744	-		LRK54_RS11185	0.39	-1.2
2,486,744	-		LRK54_RS11185	0.39	+0.9
2,486,744	-		LRK54_RS11185	0.39	-0.6
2,486,744	-		LRK54_RS11185	0.39	+0.4
2,486,744	-		LRK54_RS11185	0.39	+1.1
2,486,744	-		LRK54_RS11185	0.39	+0.0
2,486,744	-		LRK54_RS11185	0.39	+0.6
2,486,744	-		LRK54_RS11185	0.39	-0.3
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,774	+		LRK54_RS11185	0.48	+0.2
2,486,794	+		LRK54_RS11185	0.55	+0.5
2,486,794	+		LRK54_RS11185	0.55	+0.0
2,486,794	+		LRK54_RS11185	0.55	-0.3
2,486,795	-		LRK54_RS11185	0.55	-1.8
2,486,795	-		LRK54_RS11185	0.55	-1.7
2,486,795	-		LRK54_RS11185	0.55	-0.1
2,486,795	-		LRK54_RS11185	0.55	-0.4
2,486,845	+		LRK54_RS11185	0.70	+0.4
2,486,845	+		LRK54_RS11185	0.70	-1.7
2,486,845	+		LRK54_RS11185	0.70	-0.0
2,486,846	-		LRK54_RS11185	0.71	+0.9
2,486,846	-		LRK54_RS11185	0.71	+0.0
2,486,846	-		LRK54_RS11185	0.71	+0.3
2,486,846	-		LRK54_RS11185	0.71	+2.2
2,486,846	-		LRK54_RS11185	0.71	-1.2
2,486,846	-		LRK54_RS11185	0.71	+0.6
2,486,881	+		LRK54_RS11185	0.82	+1.1
2,486,881	+		LRK54_RS11185	0.82	-0.3
2,486,923	-				-0.3
2,486,998	+				-1.0
2,486,999	-				+0.5
2,486,999	-				+3.2
2,486,999	-				+0.0
2,486,999	-				-0.3
2,486,999	-				+0.6
2,486,999	-				-1.2
2,486,999	-				+0.6
2,486,999	-				+0.0
2,486,999	-				+0.6
2,487,041	+				-1.0
2,487,072	-				+1.3
2,487,072	-				+0.6
2,487,072	-				+0.3
2,487,239	+		LRK54_RS11190	0.32	+0.5
2,487,239	+		LRK54_RS11190	0.32	-1.7
2,487,239	+		LRK54_RS11190	0.32	-0.8
2,487,239	+		LRK54_RS11190	0.32	-0.6
2,487,239	+		LRK54_RS11190	0.32	+0.6
2,487,239	+		LRK54_RS11190	0.32	-0.9
2,487,239	+		LRK54_RS11190	0.32	+0.1
2,487,239	+		LRK54_RS11190	0.32	+1.1
2,487,239	+		LRK54_RS11190	0.32	+0.4
2,487,240	-		LRK54_RS11190	0.32	+0.2
2,487,240	-		LRK54_RS11190	0.32	-0.3
2,487,240	-		LRK54_RS11190	0.32	-0.4
2,487,240	-		LRK54_RS11190	0.32	-1.9
2,487,240	-		LRK54_RS11190	0.32	+0.6
2,487,398	+		LRK54_RS11190	0.55	+1.4
2,487,398	+		LRK54_RS11190	0.55	-0.2
2,487,398	+		LRK54_RS11190	0.55	-0.6
2,487,399	-		LRK54_RS11190	0.55	+0.3
2,487,399	-		LRK54_RS11190	0.55	+0.4
2,487,399	-		LRK54_RS11190	0.55	-2.1
2,487,399	-		LRK54_RS11190	0.55	+0.2
2,487,399	-		LRK54_RS11190	0.55	+1.6
2,487,410	+		LRK54_RS11190	0.57	-1.1
2,487,410	+		LRK54_RS11190	0.57	-2.0
2,487,410	+		LRK54_RS11190	0.57	-0.1
2,487,410	+		LRK54_RS11190	0.57	+1.0
2,487,410	+		LRK54_RS11190	0.57	-0.4
2,487,410	+		LRK54_RS11190	0.57	-2.6
2,487,410	+		LRK54_RS11190	0.57	-0.1
2,487,410	+		LRK54_RS11190	0.57	-0.5
2,487,410	+		LRK54_RS11190	0.57	-1.0
2,487,410	+		LRK54_RS11190	0.57	-0.4
2,487,410	+		LRK54_RS11190	0.57	-0.9
2,487,410	+		LRK54_RS11190	0.57	+2.0
2,487,410	+		LRK54_RS11190	0.57	+0.3
2,487,410	+		LRK54_RS11190	0.57	-1.1
2,487,410	+		LRK54_RS11190	0.57	-1.2
2,487,411	-		LRK54_RS11190	0.57	-0.2
2,487,411	-		LRK54_RS11190	0.57	+0.4
2,487,411	-		LRK54_RS11190	0.57	-1.6
2,487,411	-		LRK54_RS11190	0.57	-0.1
2,487,411	-		LRK54_RS11190	0.57	-0.4
2,487,411	-		LRK54_RS11190	0.57	+0.6
2,487,411	-		LRK54_RS11190	0.57	-0.8
2,487,411	-		LRK54_RS11190	0.57	+1.0
2,487,411	-		LRK54_RS11190	0.57	+0.2
2,487,411	-		LRK54_RS11190	0.57	+0.7
2,487,411	-		LRK54_RS11190	0.57	-0.7
2,487,482	+		LRK54_RS11190	0.68	-0.6
2,487,482	+		LRK54_RS11190	0.68	-0.8
2,487,482	+		LRK54_RS11190	0.68	-0.3
2,487,482	+		LRK54_RS11190	0.68	-1.0
2,487,482	+		LRK54_RS11190	0.68	-0.4
2,487,482	+		LRK54_RS11190	0.68	-0.5
2,487,482	+		LRK54_RS11190	0.68	-0.4
2,487,483	-		LRK54_RS11190	0.68	-0.9
2,487,483	-		LRK54_RS11190	0.68	+0.2
2,487,483	-		LRK54_RS11190	0.68	-0.4
2,487,483	-		LRK54_RS11190	0.68	+0.4
2,487,483	-		LRK54_RS11190	0.68	+0.9
2,487,483	-		LRK54_RS11190	0.68	-0.5
2,487,483	-		LRK54_RS11190	0.68	+0.1
2,487,620	+		LRK54_RS11190	0.88	+0.0
2,487,621	-		LRK54_RS11190	0.89	-0.7
2,487,621	-		LRK54_RS11190	0.89	-0.7
2,487,621	-		LRK54_RS11190	0.89	-1.0
2,487,621	-		LRK54_RS11190	0.89	-0.4
2,487,621	-		LRK54_RS11190	0.89	+0.3
2,487,784	-				-0.0
2,487,784	-				-0.2
2,487,790	+				-0.3
2,487,790	+				-0.4
2,487,790	+				+0.2
2,487,790	+				+1.6
2,487,790	+				-0.6
2,487,790	+				+0.2
2,487,790	+				-0.4
2,487,790	+				-1.8
2,487,790	+				-0.3
2,487,791	-				-0.7
2,487,791	-				-0.5
2,487,791	-				-1.9
2,487,791	-				+1.1
2,487,791	-				+1.0
2,487,791	-				+0.8
2,487,791	-				+0.6
2,487,791	-				-0.9
2,487,791	-				+0.0
2,487,791	-				+1.6
2,487,791	-				-0.3
2,487,791	-				+0.6
2,487,791	-				-0.0
2,487,791	-				+0.7
2,487,791	-				-0.4
2,487,791	-				-1.9
2,487,871	+				+0.2
2,487,871	+				+0.8
2,487,871	+				+0.6
2,487,872	-				+0.3
2,487,872	-				+0.8
2,487,872	-				-0.6
2,487,872	-				+0.3
2,487,872	-				-0.5
2,488,117	+		LRK54_RS11195	0.36	-0.8
2,488,117	+		LRK54_RS11195	0.36	-0.6
2,488,117	+		LRK54_RS11195	0.36	-0.1
2,488,117	+		LRK54_RS11195	0.36	+0.8
2,488,118	-		LRK54_RS11195	0.36	-2.6
2,488,118	-		LRK54_RS11195	0.36	-1.9
2,488,118	-		LRK54_RS11195	0.36	-0.7
2,488,118	-		LRK54_RS11195	0.36	+1.0
2,488,118	-		LRK54_RS11195	0.36	-1.0
2,488,144	+		LRK54_RS11195	0.39	+0.6
2,488,144	+		LRK54_RS11195	0.39	-2.1
2,488,144	+		LRK54_RS11195	0.39	-1.1
2,488,144	+		LRK54_RS11195	0.39	+1.2
2,488,144	+		LRK54_RS11195	0.39	+0.0
2,488,144	+		LRK54_RS11195	0.39	-1.0
2,488,144	+		LRK54_RS11195	0.39	+0.0
2,488,144	+		LRK54_RS11195	0.39	-0.2
2,488,144	+		LRK54_RS11195	0.39	+1.6
2,488,144	+		LRK54_RS11195	0.39	+0.0
2,488,144	+		LRK54_RS11195	0.39	+1.6
2,488,144	+		LRK54_RS11195	0.39	+0.8
2,488,145	-		LRK54_RS11195	0.39	+0.3
2,488,145	-		LRK54_RS11195	0.39	-0.6
2,488,145	-		LRK54_RS11195	0.39	-1.8
2,488,145	-		LRK54_RS11195	0.39	-0.6
2,488,145	-		LRK54_RS11195	0.39	+0.9
2,488,145	-		LRK54_RS11195	0.39	+1.6
2,488,145	-		LRK54_RS11195	0.39	+0.6
2,488,145	-		LRK54_RS11195	0.39	-0.7
2,488,145	-		LRK54_RS11195	0.39	+0.4
2,488,145	-		LRK54_RS11195	0.39	+0.3
2,488,145	-		LRK54_RS11195	0.39	+0.9
2,488,145	-		LRK54_RS11195	0.39	-3.4
2,488,145	-		LRK54_RS11195	0.39	-0.1
2,488,145	-		LRK54_RS11195	0.39	+0.8
2,488,145	-		LRK54_RS11195	0.39	-0.7
2,488,145	-		LRK54_RS11195	0.39	-0.7
2,488,219	+		LRK54_RS11195	0.47	-0.7
2,488,219	+		LRK54_RS11195	0.47	+0.1
2,488,220	-		LRK54_RS11195	0.47	-2.0
2,488,558	+		LRK54_RS11195	0.84	+0.9
2,488,558	+		LRK54_RS11195	0.84	-0.1
2,488,558	+		LRK54_RS11195	0.84	+0.5
2,488,558	+		LRK54_RS11195	0.84	+0.5
2,488,558	+		LRK54_RS11195	0.84	-0.2
2,488,558	+		LRK54_RS11195	0.84	-1.2
2,488,558	+		LRK54_RS11195	0.84	+0.7
2,488,558	+		LRK54_RS11195	0.84	+0.5
2,488,558	+		LRK54_RS11195	0.84	+0.8
2,488,558	+		LRK54_RS11195	0.84	+0.6
2,488,559	-		LRK54_RS11195	0.84	+0.9
2,488,559	-		LRK54_RS11195	0.84	+0.5
2,488,559	-		LRK54_RS11195	0.84	+0.9
2,488,559	-		LRK54_RS11195	0.84	+0.0
2,488,559	-		LRK54_RS11195	0.84	+0.6