Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10525

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
2,322,497	+				-0.3
2,322,497	+				-1.0
2,322,497	+				-0.4
2,322,497	+				-0.9
2,322,498	-				+0.3
2,322,498	-				-0.2
2,322,662	+		LRK54_RS10520	0.21	+0.4
2,322,662	+		LRK54_RS10520	0.21	-0.1
2,322,662	+		LRK54_RS10520	0.21	+0.1
2,322,662	+		LRK54_RS10520	0.21	-1.9
2,322,662	+		LRK54_RS10520	0.21	+0.8
2,322,662	+		LRK54_RS10520	0.21	+1.0
2,322,662	+		LRK54_RS10520	0.21	-0.5
2,322,662	+		LRK54_RS10520	0.21	-1.0
2,322,662	+		LRK54_RS10520	0.21	+0.7
2,322,662	+		LRK54_RS10520	0.21	-2.4
2,322,662	+		LRK54_RS10520	0.21	-0.3
2,322,662	+		LRK54_RS10520	0.21	-0.8
2,322,662	+		LRK54_RS10520	0.21	+0.4
2,322,662	+		LRK54_RS10520	0.21	-0.5
2,322,662	+		LRK54_RS10520	0.21	+0.4
2,322,662	+		LRK54_RS10520	0.21	+0.2
2,322,662	+		LRK54_RS10520	0.21	+0.6
2,322,662	+		LRK54_RS10520	0.21	-1.5
2,322,662	+		LRK54_RS10520	0.21	-1.0
2,322,662	+		LRK54_RS10520	0.21	+4.2
2,322,663	-		LRK54_RS10520	0.22	+0.1
2,322,663	-		LRK54_RS10520	0.22	-0.9
2,322,663	-		LRK54_RS10520	0.22	-0.7
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+0.3
2,322,663	-		LRK54_RS10520	0.22	-1.6
2,322,663	-		LRK54_RS10520	0.22	-0.4
2,322,663	-		LRK54_RS10520	0.22	+0.0
2,322,663	-		LRK54_RS10520	0.22	-0.5
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	+0.4
2,322,663	-		LRK54_RS10520	0.22	+0.0
2,322,663	-				+2.3
2,322,663	-		LRK54_RS10520	0.22	+0.1
2,322,663	-		LRK54_RS10520	0.22	-0.1
2,322,663	-		LRK54_RS10520	0.22	-0.7
2,322,663	-		LRK54_RS10520	0.22	+1.4
2,322,663	-		LRK54_RS10520	0.22	-1.5
2,322,663	-		LRK54_RS10520	0.22	+0.2
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	-0.6
2,322,663	-		LRK54_RS10520	0.22	-0.2
2,322,663	-		LRK54_RS10520	0.22	-0.9
2,322,663	-		LRK54_RS10520	0.22	-1.0
2,322,663	-		LRK54_RS10520	0.22	-0.1
2,322,663	-		LRK54_RS10520	0.22	-0.6
2,322,663	-		LRK54_RS10520	0.22	-0.7
2,322,663	-		LRK54_RS10520	0.22	-0.8
2,322,663	-		LRK54_RS10520	0.22	-1.6
2,322,663	-		LRK54_RS10520	0.22	-0.6
2,322,663	-		LRK54_RS10520	0.22	-0.5
2,322,663	-		LRK54_RS10520	0.22	+1.0
2,322,665	+		LRK54_RS10520	0.22	-0.6
2,322,665	+		LRK54_RS10520	0.22	+1.8
2,322,665	+		LRK54_RS10520	0.22	+1.8
2,322,666	-		LRK54_RS10520	0.22	-0.6
2,322,666	-		LRK54_RS10520	0.22	+0.1
2,322,873	+		LRK54_RS10520	0.45	+1.1
2,322,874	-		LRK54_RS10520	0.45	-1.9
2,322,980	+		LRK54_RS10520	0.57	+0.3
2,322,980	+		LRK54_RS10520	0.57	+0.9
2,322,980	+		LRK54_RS10520	0.57	+0.3
2,322,980	+		LRK54_RS10520	0.57	-0.5
2,322,981	-		LRK54_RS10520	0.57	-0.4
2,322,981	-		LRK54_RS10520	0.57	-0.4
2,323,154	+		LRK54_RS10520	0.77	+0.5
2,323,154	+		LRK54_RS10520	0.77	+0.1
2,323,154	+		LRK54_RS10520	0.77	-0.2
2,323,155	-		LRK54_RS10520	0.77	+0.6
2,323,155	-		LRK54_RS10520	0.77	+0.3
2,323,155	-		LRK54_RS10520	0.77	+0.0
2,323,155	-		LRK54_RS10520	0.77	+0.6
2,323,155	-		LRK54_RS10520	0.77	+1.0
2,323,155	-		LRK54_RS10520	0.77	-1.0
2,323,155	-		LRK54_RS10520	0.77	+0.4
2,323,155	-		LRK54_RS10520	0.77	+1.0
2,323,155	-		LRK54_RS10520	0.77	-1.7
2,323,155	-		LRK54_RS10520	0.77	+0.3
2,323,361	+				+1.0
2,323,361	+				-0.3
2,323,361	+				+2.0
2,323,361	+				-0.5
2,323,362	-				+0.6
2,323,450	+				+1.9
2,323,450	+				+0.6
2,323,450	+				-0.8
2,323,450	+				-0.5
2,323,450	+				+0.6
2,323,451	-				-0.4
2,323,451	-				-0.3
2,323,451	-				+0.0
2,323,451	-				-0.8
2,323,451	-				+2.6
2,323,451	-				+0.3
2,323,451	-				-0.7
2,323,663	+		LRK54_RS10525	0.28	-0.9
2,323,664	-		LRK54_RS10525	0.29	+0.1
2,323,765	+		LRK54_RS10525	0.42	-0.3
2,323,765	+		LRK54_RS10525	0.42	-0.5
2,323,766	-		LRK54_RS10525	0.42	+0.6
2,323,766	-		LRK54_RS10525	0.42	+1.6
2,323,766	-		LRK54_RS10525	0.42	+0.9
2,323,906	+		LRK54_RS10525	0.61	-0.6
2,323,906	+		LRK54_RS10525	0.61	+0.2
2,323,906	+		LRK54_RS10525	0.61	-1.3
2,323,906	+		LRK54_RS10525	0.61	+0.1
2,323,906	+		LRK54_RS10525	0.61	+0.1
2,323,907	-		LRK54_RS10525	0.61	+0.1
2,323,907	-		LRK54_RS10525	0.61	+0.3
2,323,907	-		LRK54_RS10525	0.61	+1.1
2,323,907	-		LRK54_RS10525	0.61	+1.1
2,323,955	-		LRK54_RS10525	0.67	+0.1
2,323,987	+		LRK54_RS10525	0.71	-1.7
2,323,987	+		LRK54_RS10525	0.71	-0.3
2,323,987	+		LRK54_RS10525	0.71	+0.6
2,323,987	+		LRK54_RS10525	0.71	-0.2
2,323,987	+		LRK54_RS10525	0.71	-0.5
2,323,988	-		LRK54_RS10525	0.72	-1.0
2,323,988	-		LRK54_RS10525	0.72	-0.1
2,323,988	-		LRK54_RS10525	0.72	+0.3
2,323,988	-		LRK54_RS10525	0.72	+0.1
2,324,113	+		LRK54_RS10525	0.88	-0.2
2,324,113	+		LRK54_RS10525	0.88	+1.1
2,324,113	+		LRK54_RS10525	0.88	+0.3
2,324,113	+		LRK54_RS10525	0.88	-1.2
2,324,113	+		LRK54_RS10525	0.88	-0.3
2,324,114	-		LRK54_RS10525	0.88	+0.3
2,324,114	-		LRK54_RS10525	0.88	+0.0
2,324,114	-		LRK54_RS10525	0.88	-0.4
2,324,158	+				-0.7
2,324,158	+				+0.6
2,324,158	+				-1.2
2,324,159	-				-0.7
2,324,170	+				-0.7
2,324,170	+				+1.6
2,324,170	+				-1.0
2,324,170	+				-1.6
2,324,170	+				-1.1
2,324,170	+				-0.2
2,324,170	+				-0.7
2,324,170	+				+0.0
2,324,170	+				-1.1
2,324,171	-				-0.1
2,324,171	-				-1.4
2,324,171	-				-0.8
2,324,171	-				+0.7
2,324,171	-				-1.9
2,324,171	-				-0.3
2,324,171	-				-1.2
2,324,171	-				+0.3
2,324,171	-				-0.3
2,324,171	-				-1.0
2,324,343	-				-1.3
2,324,519	+				-1.4
2,324,520	-				-0.5
2,324,520	-				+0.8
2,324,546	+				-0.2
2,324,546	+				-0.4
2,324,546	+				-1.9
2,324,546	+				-0.6
2,324,546	+				-0.3
2,324,546	+				-0.7
2,324,546	+				-0.9
2,324,546	+				-1.0
2,324,546	+				+1.9
2,324,546	+				-0.4
2,324,546	+				-0.4
2,324,546	+				-1.3
2,324,546	+				+0.7
2,324,546	+				-0.1
2,324,546	+				-0.7
2,324,547	-				-1.6
2,324,547	-				-1.8
2,324,547	-				+0.3
2,324,547	-				-1.4
2,324,547	-				-0.7
2,324,547	-				+0.6
2,324,547	-				-1.1
2,324,547	-				+0.2
2,324,547	-				-0.8
2,324,547	-				-0.2
2,324,615	+				+0.3
2,324,615	+				-0.7
2,324,615	+				-0.8
2,324,615	+				-0.1
2,324,616	-				+0.5
2,324,616	-				+0.1
2,324,616	-				-1.2
2,324,616	-				-2.0
2,324,616	-				-0.9
2,324,616	-				-1.5
2,324,616	-				-0.1
2,324,616	-				+1.0
2,324,769	-		LRK54_RS10530	0.15	-1.0
2,324,819	+		LRK54_RS10530	0.17	+0.5
2,324,819	+		LRK54_RS10530	0.17	-0.8
2,324,819	+		LRK54_RS10530	0.17	-2.1
2,324,819	+		LRK54_RS10530	0.17	-0.3
2,324,819	+		LRK54_RS10530	0.17	+0.2
2,324,819	+		LRK54_RS10530	0.17	-0.3
2,324,819	+		LRK54_RS10530	0.17	+1.2
2,324,819	+		LRK54_RS10530	0.17	-0.2
2,324,819	+		LRK54_RS10530	0.17	+0.7
2,324,819	+		LRK54_RS10530	0.17	+1.2
2,324,819	+		LRK54_RS10530	0.17	+0.3
2,324,819	+		LRK54_RS10530	0.17	+1.5
2,324,819	+		LRK54_RS10530	0.17	-0.7
2,324,819	+		LRK54_RS10530	0.17	+0.1
2,324,819	+		LRK54_RS10530	0.17	+1.6
2,324,819	+		LRK54_RS10530	0.17	-1.2
2,324,819	+		LRK54_RS10530	0.17	-2.2
2,324,819	+		LRK54_RS10530	0.17	-1.0
2,324,819	+		LRK54_RS10530	0.17	-0.4
2,324,819	+		LRK54_RS10530	0.17	-1.6
2,324,819	+		LRK54_RS10530	0.17	-1.0
2,324,820	-		LRK54_RS10530	0.17	-1.6
2,324,820	-		LRK54_RS10530	0.17	+0.6
2,324,820	-		LRK54_RS10530	0.17	-1.7
2,324,820	-		LRK54_RS10530	0.17	-0.9
2,324,820	-		LRK54_RS10530	0.17	-2.3
2,324,820	-		LRK54_RS10530	0.17	-0.2
2,324,820	-		LRK54_RS10530	0.17	-1.7
2,324,820	-		LRK54_RS10530	0.17	-0.4
2,324,820	-		LRK54_RS10530	0.17	-1.4
2,324,820	-		LRK54_RS10530	0.17	-1.4
2,324,820	-		LRK54_RS10530	0.17	-1.3
2,324,820	-		LRK54_RS10530	0.17	+0.1
2,324,820	-		LRK54_RS10530	0.17	+0.5
2,324,820	-		LRK54_RS10530	0.17	+0.3
2,324,820	-		LRK54_RS10530	0.17	-1.9
2,324,820	-		LRK54_RS10530	0.17	+0.6
2,324,820	-		LRK54_RS10530	0.17	-1.0
2,324,820	-		LRK54_RS10530	0.17	-3.1
2,324,820	-		LRK54_RS10530	0.17	+0.5
2,324,820	-		LRK54_RS10530	0.17	-0.8
2,324,820	-		LRK54_RS10530	0.17	-1.2
2,325,128	+		LRK54_RS10530	0.30	-1.1
2,325,128	+		LRK54_RS10530	0.30	+0.4
2,325,128	+		LRK54_RS10530	0.30	-0.4
2,325,128	+		LRK54_RS10530	0.30	-0.5
2,325,128	+		LRK54_RS10530	0.30	-0.7
2,325,128	+		LRK54_RS10530	0.30	-2.7
2,325,128	+		LRK54_RS10530	0.30	-0.6
2,325,128	+		LRK54_RS10530	0.30	-0.8
2,325,128	+		LRK54_RS10530	0.30	-0.6
2,325,128	+		LRK54_RS10530	0.30	-1.0
2,325,128	+		LRK54_RS10530	0.30	-1.3
2,325,128	+		LRK54_RS10530	0.30	-0.4
2,325,128	+		LRK54_RS10530	0.30	-0.7
2,325,128	+		LRK54_RS10530	0.30	+0.6
2,325,129	-		LRK54_RS10530	0.30	-0.7
2,325,129	-		LRK54_RS10530	0.30	-1.1
2,325,129	-		LRK54_RS10530	0.30	+0.0
2,325,129	-		LRK54_RS10530	0.30	+0.8
2,325,129	-		LRK54_RS10530	0.30	-0.9
2,325,129	-		LRK54_RS10530	0.30	-1.1
2,325,129	-		LRK54_RS10530	0.30	-2.1
2,325,129	-		LRK54_RS10530	0.30	-0.1
2,325,129	-		LRK54_RS10530	0.30	-1.6
2,325,129	-		LRK54_RS10530	0.30	-0.4
2,325,129	-		LRK54_RS10530	0.30	-0.4
2,325,129	-		LRK54_RS10530	0.30	+1.3
2,325,129	-		LRK54_RS10530	0.30	-1.9
2,325,176	+		LRK54_RS10530	0.32	-0.2
2,325,176	+		LRK54_RS10530	0.32	-0.4
2,325,176	+		LRK54_RS10530	0.32	+0.6
2,325,177	-		LRK54_RS10530	0.33	+0.4
2,325,177	-		LRK54_RS10530	0.33	-1.0
2,325,177	-		LRK54_RS10530	0.33	-0.5
2,325,177	-		LRK54_RS10530	0.33	-0.6
2,325,177	-		LRK54_RS10530	0.33	+2.0
2,325,177	-		LRK54_RS10530	0.33	-0.9
2,325,177	-		LRK54_RS10530	0.33	-2.6