Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09100

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
1,992,665	+		LRK54_RS09095	0.25	+0.7
1,992,665	+		LRK54_RS09095	0.25	+0.4
1,992,665	+		LRK54_RS09095	0.25	-2.4
1,992,666	-		LRK54_RS09095	0.25	+0.7
1,992,666	-		LRK54_RS09095	0.25	+1.0
1,992,666	-		LRK54_RS09095	0.25	+0.5
1,992,746	+		LRK54_RS09095	0.32	+1.0
1,992,746	+		LRK54_RS09095	0.32	-0.7
1,992,747	-		LRK54_RS09095	0.32	-1.0
1,992,747	-		LRK54_RS09095	0.32	-1.1
1,992,747	-		LRK54_RS09095	0.32	-0.3
1,992,747	-		LRK54_RS09095	0.32	+0.3
1,992,747	-		LRK54_RS09095	0.32	-1.8
1,992,860	+		LRK54_RS09095	0.42	-1.1
1,992,965	+		LRK54_RS09095	0.51	-0.1
1,992,965	+		LRK54_RS09095	0.51	-0.1
1,992,965	+		LRK54_RS09095	0.51	-0.9
1,992,965	+		LRK54_RS09095	0.51	+0.9
1,992,965	+		LRK54_RS09095	0.51	-0.8
1,992,965	+		LRK54_RS09095	0.51	-1.1
1,992,965	+		LRK54_RS09095	0.51	+0.1
1,992,966	-		LRK54_RS09095	0.51	-1.5
1,992,966	-		LRK54_RS09095	0.51	-0.0
1,992,966	-		LRK54_RS09095	0.51	+0.9
1,992,966	-		LRK54_RS09095	0.51	-0.2
1,992,966	-		LRK54_RS09095	0.51	+0.9
1,992,966	-		LRK54_RS09095	0.51	-0.6
1,993,007	+		LRK54_RS09095	0.55	-0.3
1,993,007	+		LRK54_RS09095	0.55	-1.6
1,993,007	+		LRK54_RS09095	0.55	+0.2
1,993,007	+		LRK54_RS09095	0.55	-0.0
1,993,007	+		LRK54_RS09095	0.55	-2.1
1,993,008	-		LRK54_RS09095	0.55	+0.6
1,993,008	-		LRK54_RS09095	0.55	+0.4
1,993,008	-		LRK54_RS09095	0.55	+0.5
1,993,008	-		LRK54_RS09095	0.55	-0.9
1,993,008	-		LRK54_RS09095	0.55	+0.7
1,993,008	-		LRK54_RS09095	0.55	+0.7
1,993,008	-		LRK54_RS09095	0.55	-0.5
1,993,177	+		LRK54_RS09095	0.70	+0.1
1,993,178	+		LRK54_RS09095	0.70	+0.3
1,993,178	+		LRK54_RS09095	0.70	+0.5
1,993,178	+		LRK54_RS09095	0.70	-1.6
1,993,178	+		LRK54_RS09095	0.70	-2.0
1,993,178	+		LRK54_RS09095	0.70	-0.4
1,993,178	+		LRK54_RS09095	0.70	-0.1
1,993,178	+		LRK54_RS09095	0.70	+0.7
1,993,178	+		LRK54_RS09095	0.70	-0.1
1,993,178	+		LRK54_RS09095	0.70	+0.2
1,993,178	+		LRK54_RS09095	0.70	+0.1
1,993,178	+		LRK54_RS09095	0.70	+1.7
1,993,178	+		LRK54_RS09095	0.70	-0.5
1,993,178	+		LRK54_RS09095	0.70	+0.7
1,993,178	+		LRK54_RS09095	0.70	-1.0
1,993,178	+		LRK54_RS09095	0.70	-0.6
1,993,178	+		LRK54_RS09095	0.70	-0.4
1,993,178	+		LRK54_RS09095	0.70	+1.3
1,993,178	+		LRK54_RS09095	0.70	+1.3
1,993,178	+		LRK54_RS09095	0.70	-1.0
1,993,178	+		LRK54_RS09095	0.70	-1.3
1,993,178	+		LRK54_RS09095	0.70	+0.4
1,993,178	+		LRK54_RS09095	0.70	+0.4
1,993,178	+		LRK54_RS09095	0.70	-0.7
1,993,178	+		LRK54_RS09095	0.70	+0.7
1,993,178	+		LRK54_RS09095	0.70	+2.0
1,993,178	+		LRK54_RS09095	0.70	-1.3
1,993,178	+		LRK54_RS09095	0.70	-2.0
1,993,178	+		LRK54_RS09095	0.70	-0.0
1,993,179	-		LRK54_RS09095	0.70	-0.1
1,993,179	-		LRK54_RS09095	0.70	-0.4
1,993,179	-		LRK54_RS09095	0.70	-1.3
1,993,179	-		LRK54_RS09095	0.70	+0.4
1,993,179	-		LRK54_RS09095	0.70	-1.2
1,993,179	-		LRK54_RS09095	0.70	-0.2
1,993,179	-		LRK54_RS09095	0.70	-0.2
1,993,179	-		LRK54_RS09095	0.70	+0.4
1,993,179	-		LRK54_RS09095	0.70	-0.7
1,993,179	-		LRK54_RS09095	0.70	+0.7
1,993,179	-		LRK54_RS09095	0.70	-1.1
1,993,179	-		LRK54_RS09095	0.70	+0.5
1,993,179	-		LRK54_RS09095	0.70	+0.2
1,993,179	-		LRK54_RS09095	0.70	-0.7
1,993,179	-		LRK54_RS09095	0.70	-0.1
1,993,179	-		LRK54_RS09095	0.70	-1.5
1,993,179	-		LRK54_RS09095	0.70	-0.2
1,993,179	-		LRK54_RS09095	0.70	-0.6
1,993,179	-		LRK54_RS09095	0.70	-1.1
1,993,179	-		LRK54_RS09095	0.70	+1.8
1,993,179	-		LRK54_RS09095	0.70	+0.4
1,993,179	-		LRK54_RS09095	0.70	-0.5
1,993,179	-		LRK54_RS09095	0.70	-1.0
1,993,179	-		LRK54_RS09095	0.70	-0.1
1,993,179	-		LRK54_RS09095	0.70	+0.1
1,993,179	-		LRK54_RS09095	0.70	+0.7
1,993,179	-		LRK54_RS09095	0.70	+0.3
1,993,179	-		LRK54_RS09095	0.70	-0.2
1,993,179	-		LRK54_RS09095	0.70	-0.4
1,993,179	-		LRK54_RS09095	0.70	+0.2
1,993,179	-		LRK54_RS09095	0.70	+0.3
1,993,179	-		LRK54_RS09095	0.70	+1.1
1,993,179	-		LRK54_RS09095	0.70	+0.1
1,993,179	-		LRK54_RS09095	0.70	-2.1
1,993,179	-		LRK54_RS09095	0.70	-0.9
1,993,443	+				-1.4
1,993,443	+				+0.7
1,993,443	+				+0.0
1,993,443	+				-0.4
1,993,443	+				-0.5
1,993,443	+				+0.1
1,993,443	+				-0.8
1,993,443	+				+1.2
1,993,443	+				-0.1
1,993,443	+				-1.0
1,993,443	+				-1.3
1,993,443	+				+0.5
1,993,443	+				-2.5
1,993,443	+				+0.1
1,993,443	+				-1.5
1,993,443	+				-1.0
1,993,443	+				+1.2
1,993,443	+				+0.6
1,993,443	+				+0.3
1,993,443	+				+1.2
1,993,443	+				+0.9
1,993,443	+				-0.4
1,993,443	+				-0.4
1,993,443	+				+0.3
1,993,443	+				-0.3
1,993,443	+				-0.5
1,993,444	-				+0.4
1,993,444	-				-0.5
1,993,444	-				+0.2
1,993,444	-				+1.0
1,993,444	-				-0.9
1,993,444	-				+0.5
1,993,444	-				+0.0
1,993,444	-				+0.9
1,993,444	-				+1.1
1,993,444	-				-1.5
1,993,444	-				+0.1
1,993,444	-				+0.1
1,993,444	-				-0.5
1,993,444	-				+0.7
1,993,444	-				-1.4
1,993,444	-				+0.7
1,993,444	-				+1.5
1,993,444	-				+0.8
1,993,444	-				-0.3
1,993,444	-				+1.3
1,993,444	-				-0.8
1,993,558	+				-0.3
1,993,558	+				+0.6
1,993,558	+				+0.2
1,993,558	+				+0.7
1,993,558	+				-0.5
1,993,558	+				-0.3
1,993,558	+				-0.6
1,993,558	+				-0.1
1,993,558	+				+0.4
1,993,558	+				-2.9
1,993,558	+				+0.4
1,993,558	+				-0.1
1,993,558	+				+0.4
1,993,558	+				-1.3
1,993,558	+				-0.5
1,993,559	-				-0.3
1,993,559	-				+0.1
1,993,559	-				-0.1
1,993,559	-				-0.8
1,993,559	-				-0.9
1,993,559	-				-0.3
1,993,559	-				+0.1
1,993,559	-				-0.0
1,993,559	-				+0.2
1,993,559	-				+0.2
1,993,559	-				+0.3
1,993,559	-				-0.3
1,993,559	-				+0.9
1,993,601	+				-0.7
1,993,602	-				-0.1
1,993,710	+				+0.1
1,993,710	+				-1.3
1,993,710	+				-1.4
1,993,710	+				-2.9
1,993,710	+				-2.0
1,993,711	-				-0.6
1,993,711	-				+1.7
1,993,711	-				-1.9
1,993,711	-				-3.5
1,993,711	-				-1.3
1,993,711	-				-0.3
1,993,711	-				-2.7
1,993,711	-				-0.7
1,994,022	+		LRK54_RS09100	0.30	-2.3
1,994,022	+		LRK54_RS09100	0.30	-1.9
1,994,022	+		LRK54_RS09100	0.30	-1.1
1,994,022	+		LRK54_RS09100	0.30	-0.2
1,994,268	+		LRK54_RS09100	0.49	-0.9
1,994,268	+		LRK54_RS09100	0.49	-2.0
1,994,268	+		LRK54_RS09100	0.49	-0.6
1,994,268	+		LRK54_RS09100	0.49	-1.3
1,994,268	+		LRK54_RS09100	0.49	-1.4
1,994,269	-		LRK54_RS09100	0.49	-0.3
1,994,628	+		LRK54_RS09100	0.77	+1.7
1,994,628	+		LRK54_RS09100	0.77	-1.4
1,994,628	+		LRK54_RS09100	0.77	-2.0
1,994,628	+		LRK54_RS09100	0.77	-0.8
1,994,628	+		LRK54_RS09100	0.77	-0.5
1,994,628	+		LRK54_RS09100	0.77	-2.4
1,994,628	+		LRK54_RS09100	0.77	-1.9
1,994,628	+		LRK54_RS09100	0.77	-0.3
1,994,628	+		LRK54_RS09100	0.77	-0.7
1,994,628	+		LRK54_RS09100	0.77	-0.7
1,994,629	-		LRK54_RS09100	0.77	-1.2
1,994,629	-		LRK54_RS09100	0.77	-0.3
1,994,629	-		LRK54_RS09100	0.77	-1.9
1,994,629	-		LRK54_RS09100	0.77	-1.9
1,994,629	-		LRK54_RS09100	0.77	-2.5
1,994,629	-		LRK54_RS09100	0.77	-0.6
1,994,629	-		LRK54_RS09100	0.77	-2.5
1,994,629	-		LRK54_RS09100	0.77	-2.5
1,994,629	-		LRK54_RS09100	0.77	+0.1
1,994,629	-		LRK54_RS09100	0.77	-0.4
1,994,631	+		LRK54_RS09100	0.77	-1.5
1,994,631	+		LRK54_RS09100	0.77	-2.7
1,994,631	+		LRK54_RS09100	0.77	-0.3
1,994,631	+		LRK54_RS09100	0.77	-2.0
1,994,631	+		LRK54_RS09100	0.77	-2.0
1,994,631	+		LRK54_RS09100	0.77	-2.5
1,994,631	+		LRK54_RS09100	0.77	-1.3
1,994,631	+		LRK54_RS09100	0.77	-0.3
1,994,631	+		LRK54_RS09100	0.77	-0.4
1,994,631	+		LRK54_RS09100	0.77	-0.2
1,994,631	+		LRK54_RS09100	0.77	-1.8
1,994,631	+		LRK54_RS09100	0.77	-1.5
1,994,631	+		LRK54_RS09100	0.77	-2.5
1,994,631	+		LRK54_RS09100	0.77	-0.7
1,994,631	+		LRK54_RS09100	0.77	-0.5
1,994,631	+		LRK54_RS09100	0.77	-1.0
1,994,631	+		LRK54_RS09100	0.77	-1.7
1,994,631	+		LRK54_RS09100	0.77	-1.4
1,994,631	+		LRK54_RS09100	0.77	-2.1
1,994,631	+		LRK54_RS09100	0.77	-0.1
1,994,631	+		LRK54_RS09100	0.77	-1.2
1,994,631	+		LRK54_RS09100	0.77	-0.3
1,994,632	-		LRK54_RS09100	0.77	-2.5
1,994,632	-		LRK54_RS09100	0.77	-1.4
1,994,632	-		LRK54_RS09100	0.77	-0.6
1,994,632	-		LRK54_RS09100	0.77	-0.5
1,994,632	-		LRK54_RS09100	0.77	-3.7
1,994,632	-		LRK54_RS09100	0.77	-0.3
1,994,632	-		LRK54_RS09100	0.77	-3.1
1,994,632	-		LRK54_RS09100	0.77	-1.6
1,994,632	-		LRK54_RS09100	0.77	-2.9
1,994,632	-		LRK54_RS09100	0.77	-3.7
1,994,632	-		LRK54_RS09100	0.77	-1.3
1,994,632	-		LRK54_RS09100	0.77	+0.4
1,994,632	-		LRK54_RS09100	0.77	-0.8
1,994,632	-		LRK54_RS09100	0.77	-0.9
1,994,632	-		LRK54_RS09100	0.77	+2.1
1,994,632	-		LRK54_RS09100	0.77	-2.5
1,994,632	-		LRK54_RS09100	0.77	-1.0
1,994,632	-		LRK54_RS09100	0.77	-1.7
1,994,632	-		LRK54_RS09100	0.77	+1.7
1,994,632	-		LRK54_RS09100	0.77	-2.7
1,994,632	-		LRK54_RS09100	0.77	-1.1
1,994,632	-		LRK54_RS09100	0.77	-2.8
1,994,632	-		LRK54_RS09100	0.77	-1.9
1,994,697	+		LRK54_RS09100	0.82	-1.5
1,994,697	+		LRK54_RS09100	0.82	+0.1
1,994,697	+		LRK54_RS09100	0.82	+0.4
1,994,697	+		LRK54_RS09100	0.82	-3.1
1,994,697	+		LRK54_RS09100	0.82	-2.1
1,994,697	+		LRK54_RS09100	0.82	-1.5
1,994,697	+		LRK54_RS09100	0.82	-0.3
1,994,697	+		LRK54_RS09100	0.82	+0.7
1,994,697	+		LRK54_RS09100	0.82	-1.3
1,994,697	+		LRK54_RS09100	0.82	-0.4
1,994,697	+		LRK54_RS09100	0.82	-2.5
1,994,697	+		LRK54_RS09100	0.82	-0.6
1,994,698	-		LRK54_RS09100	0.83	-0.3
1,994,698	-		LRK54_RS09100	0.83	-1.5
1,994,698	-		LRK54_RS09100	0.83	-0.7
1,994,698	-		LRK54_RS09100	0.83	-0.6
1,994,963	+				-1.1
1,994,963	+				-2.1
1,994,963	+				+1.7
1,994,963	+				+0.2
1,994,963	+				-1.7
1,994,963	+				-1.9
1,994,963	+				-1.7
1,994,963	+				+1.5
1,994,963	+				+0.2
1,994,963	+				+0.9
1,994,963	+				-0.7
1,994,963	+				-1.5
1,994,964	-				-0.1
1,994,964	-				+0.4
1,994,964	-				+0.7
1,994,964	-				-0.0
1,994,964	-				+0.9
1,994,964	-				-0.3
1,994,964	-				-0.5
1,994,964	-				+2.3
1,994,964	-				-1.1
1,994,964	-				-1.1
1,994,964	-				-0.3
1,994,964	-				+0.7
1,994,964	-				+1.2
1,994,964	-				+1.0
1,994,964	-				-0.4
1,994,964	-				-0.6
1,994,964	-				-1.3
1,994,964	-				+3.6
1,994,964	-				-0.0
1,995,088	+		LRK54_RS09105	0.21	-0.1
1,995,089	-		LRK54_RS09105	0.21	+0.2
1,995,089	-		LRK54_RS09105	0.21	-2.0
1,995,089	-		LRK54_RS09105	0.21	+1.2
1,995,089	-		LRK54_RS09105	0.21	-0.6
1,995,089	-		LRK54_RS09105	0.21	-1.6
1,995,089	-		LRK54_RS09105	0.21	-2.1
1,995,089	-		LRK54_RS09105	0.21	-1.1
1,995,559	+				+0.7
1,995,559	+				-0.6
1,995,559	+				+0.5
1,995,560	-				-1.1
1,995,560	-				-0.3
1,995,560	-				+0.3
1,995,560	-				+2.3
1,995,836	+				-1.3
1,995,836	+				-1.3
1,995,836	+				+1.1
1,995,836	+				+0.4
1,995,837	-				-0.8
1,995,837	-				-3.7
1,995,837	-				-0.5
1,995,837	-				-1.3
1,995,845	+				-1.1
1,995,845	+				-0.7
1,995,845	+				-0.9
1,995,845	+				-2.5
1,995,845	+				-1.2
1,995,845	+				-1.7
1,995,845	+				-1.6
1,995,845	+				-1.1
1,995,845	+				-1.2
1,995,845	+				-1.3
1,995,845	+				-1.2
1,995,845	+				+1.7
1,995,845	+				-2.1
1,995,845	+				+1.1
1,995,846	-				-1.1
1,995,846	-				-2.6
1,995,846	-				-0.9
1,995,846	-				-2.2
1,995,846	-				-0.7
1,995,846	-				-2.4
1,995,846	-				-0.6
1,995,846	-				-0.7
1,995,846	-				-2.9
1,995,846	-				-2.3
1,995,846	-				+0.7
1,995,846	-				-0.6
1,995,909	-				+0.9