Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06860

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
1,476,603	+		LRK54_RS06855	0.19	-0.8
1,476,603	+		LRK54_RS06855	0.19	+0.3
1,476,603	+		LRK54_RS06855	0.19	-1.2
1,476,603	+		LRK54_RS06855	0.19	+0.9
1,476,603	+		LRK54_RS06855	0.19	-0.8
1,476,603	+		LRK54_RS06855	0.19	+0.3
1,476,603	+		LRK54_RS06855	0.19	-0.6
1,476,603	+		LRK54_RS06855	0.19	+0.0
1,476,603	+		LRK54_RS06855	0.19	-1.2
1,476,603	+		LRK54_RS06855	0.19	-0.6
1,476,603	+		LRK54_RS06855	0.19	+0.4
1,476,603	+		LRK54_RS06855	0.19	-0.7
1,476,603	+		LRK54_RS06855	0.19	-0.4
1,476,603	+		LRK54_RS06855	0.19	+0.0
1,476,603	+		LRK54_RS06855	0.19	+1.2
1,476,603	+		LRK54_RS06855	0.19	-0.5
1,476,603	+		LRK54_RS06855	0.19	+0.7
1,476,603	+		LRK54_RS06855	0.19	-0.1
1,476,603	+		LRK54_RS06855	0.19	+0.3
1,476,603	+		LRK54_RS06855	0.19	-0.1
1,476,603	+		LRK54_RS06855	0.19	-0.8
1,476,604	-		LRK54_RS06855	0.20	-2.0
1,476,604	-		LRK54_RS06855	0.20	+1.2
1,476,604	-		LRK54_RS06855	0.20	-0.2
1,476,604	-		LRK54_RS06855	0.20	+0.4
1,476,604	-		LRK54_RS06855	0.20	-0.5
1,476,604	-		LRK54_RS06855	0.20	-0.8
1,476,604	-		LRK54_RS06855	0.20	-1.4
1,476,604	-		LRK54_RS06855	0.20	+1.4
1,476,604	-		LRK54_RS06855	0.20	+1.6
1,476,604	-		LRK54_RS06855	0.20	-1.4
1,476,604	-		LRK54_RS06855	0.20	+0.2
1,476,604	-		LRK54_RS06855	0.20	+1.6
1,476,604	-		LRK54_RS06855	0.20	+1.6
1,476,604	-		LRK54_RS06855	0.20	+0.0
1,476,604	-		LRK54_RS06855	0.20	-2.4
1,476,604	-		LRK54_RS06855	0.20	+0.3
1,476,604	-		LRK54_RS06855	0.20	-0.1
1,476,604	-		LRK54_RS06855	0.20	-1.0
1,476,604	-		LRK54_RS06855	0.20	-0.7
1,476,604	-		LRK54_RS06855	0.20	+0.0
1,476,604	-		LRK54_RS06855	0.20	-1.5
1,476,604	-		LRK54_RS06855	0.20	-1.6
1,476,604	-		LRK54_RS06855	0.20	+0.7
1,476,604	-		LRK54_RS06855	0.20	+3.2
1,476,604	-		LRK54_RS06855	0.20	-2.4
1,476,604	-		LRK54_RS06855	0.20	+1.1
1,476,604	-		LRK54_RS06855	0.20	-1.7
1,476,604	-		LRK54_RS06855	0.20	+1.0
1,476,604	-		LRK54_RS06855	0.20	-0.1
1,476,604	-		LRK54_RS06855	0.20	+1.6
1,476,604	-		LRK54_RS06855	0.20	+0.1
1,476,604	-		LRK54_RS06855	0.20	+0.6
1,476,604	-		LRK54_RS06855	0.20	-1.1
1,476,604	-		LRK54_RS06855	0.20	-0.6
1,476,604	-		LRK54_RS06855	0.20	+0.6
1,476,981	+		LRK54_RS06855	0.56	+0.8
1,476,981	+		LRK54_RS06855	0.56	+1.0
1,476,981	+		LRK54_RS06855	0.56	-1.7
1,476,981	+		LRK54_RS06855	0.56	+1.6
1,476,981	+		LRK54_RS06855	0.56	-0.4
1,476,981	+		LRK54_RS06855	0.56	+0.3
1,476,982	-		LRK54_RS06855	0.57	-1.8
1,476,982	-		LRK54_RS06855	0.57	+3.2
1,476,982	-		LRK54_RS06855	0.57	+0.1
1,476,982	-		LRK54_RS06855	0.57	+0.3
1,476,982	-		LRK54_RS06855	0.57	+0.3
1,476,982	-		LRK54_RS06855	0.57	+1.0
1,476,982	-		LRK54_RS06855	0.57	-0.0
1,476,982	-		LRK54_RS06855	0.57	+0.0
1,476,993	+		LRK54_RS06855	0.58	-2.1
1,477,055	+		LRK54_RS06855	0.64	+0.2
1,477,134	+		LRK54_RS06855	0.71	-0.4
1,477,134	+		LRK54_RS06855	0.71	+0.4
1,477,134	+		LRK54_RS06855	0.71	-0.2
1,477,149	+		LRK54_RS06855	0.73	-0.5
1,477,149	+		LRK54_RS06855	0.73	+0.1
1,477,149	+		LRK54_RS06855	0.73	+1.0
1,477,149	+		LRK54_RS06855	0.73	+0.4
1,477,149	+		LRK54_RS06855	0.73	-0.2
1,477,150	-		LRK54_RS06855	0.73	+0.4
1,477,150	-		LRK54_RS06855	0.73	-2.2
1,477,150	-		LRK54_RS06855	0.73	-0.0
1,477,150	-		LRK54_RS06855	0.73	+0.1
1,477,150	-		LRK54_RS06855	0.73	+0.7
1,477,150	-		LRK54_RS06855	0.73	-0.4
1,477,150	-		LRK54_RS06855	0.73	+0.8
1,477,150	-		LRK54_RS06855	0.73	+1.4
1,477,150	-		LRK54_RS06855	0.73	-1.4
1,477,150	-		LRK54_RS06855	0.73	+0.4
1,477,150	-		LRK54_RS06855	0.73	-1.0
1,477,187	+		LRK54_RS06855	0.77	-0.3
1,477,187	+		LRK54_RS06855	0.77	-1.1
1,477,187	+		LRK54_RS06855	0.77	+0.7
1,477,188	-		LRK54_RS06855	0.77	+0.7
1,477,188	-		LRK54_RS06855	0.77	+1.5
1,477,188	-		LRK54_RS06855	0.77	-0.2
1,477,235	+		LRK54_RS06855	0.81	-0.9
1,477,235	+		LRK54_RS06855	0.81	-1.8
1,477,235	+		LRK54_RS06855	0.81	-2.1
1,477,235	+		LRK54_RS06855	0.81	-0.7
1,477,236	-		LRK54_RS06855	0.81	-0.5
1,477,236	-		LRK54_RS06855	0.81	+0.4
1,477,236	-		LRK54_RS06855	0.81	-0.4
1,477,236	-		LRK54_RS06855	0.81	-0.1
1,477,236	-		LRK54_RS06855	0.81	-0.1
1,477,236	-		LRK54_RS06855	0.81	-0.1
1,477,317	+		LRK54_RS06855	0.89	-0.2
1,477,317	+		LRK54_RS06855	0.89	+0.2
1,477,317	+		LRK54_RS06855	0.89	-1.5
1,477,317	+		LRK54_RS06855	0.89	-2.3
1,477,317	+		LRK54_RS06855	0.89	-1.6
1,477,317	+		LRK54_RS06855	0.89	-0.0
1,477,317	+		LRK54_RS06855	0.89	-0.5
1,477,317	+		LRK54_RS06855	0.89	-0.3
1,477,317	+		LRK54_RS06855	0.89	+0.3
1,477,317	+		LRK54_RS06855	0.89	-0.2
1,477,317	+		LRK54_RS06855	0.89	-0.9
1,477,317	+		LRK54_RS06855	0.89	-1.1
1,477,317	+		LRK54_RS06855	0.89	+0.6
1,477,317	+		LRK54_RS06855	0.89	-0.7
1,477,317	+		LRK54_RS06855	0.89	+0.7
1,477,317	+		LRK54_RS06855	0.89	-0.6
1,477,317	+		LRK54_RS06855	0.89	+1.0
1,477,317	+		LRK54_RS06855	0.89	+0.8
1,477,317	+		LRK54_RS06855	0.89	+0.0
1,477,317	+		LRK54_RS06855	0.89	-0.8
1,477,317	+		LRK54_RS06855	0.89	+3.2
1,477,317	+		LRK54_RS06855	0.89	-0.7
1,477,317	+		LRK54_RS06855	0.89	+0.0
1,477,317	+		LRK54_RS06855	0.89	-0.7
1,477,317	+		LRK54_RS06855	0.89	+1.2
1,477,317	+		LRK54_RS06855	0.89	+1.1
1,477,317	+		LRK54_RS06855	0.89	+1.6
1,477,317	+		LRK54_RS06855	0.89	-0.5
1,477,317	+		LRK54_RS06855	0.89	+0.5
1,477,317	+		LRK54_RS06855	0.89	-0.4
1,477,317	+		LRK54_RS06855	0.89	+0.3
1,477,317	+		LRK54_RS06855	0.89	+0.0
1,477,318	-		LRK54_RS06855	0.89	+0.2
1,477,318	-		LRK54_RS06855	0.89	+0.4
1,477,318	-		LRK54_RS06855	0.89	-0.3
1,477,318	-		LRK54_RS06855	0.89	+0.0
1,477,318	-		LRK54_RS06855	0.89	+0.2
1,477,318	-		LRK54_RS06855	0.89	-1.0
1,477,318	-		LRK54_RS06855	0.89	+0.1
1,477,318	-		LRK54_RS06855	0.89	-2.1
1,477,318	-		LRK54_RS06855	0.89	+0.1
1,477,318	-		LRK54_RS06855	0.89	+2.0
1,477,318	-		LRK54_RS06855	0.89	+1.3
1,477,318	-		LRK54_RS06855	0.89	+1.0
1,477,318	-		LRK54_RS06855	0.89	+0.3
1,477,318	-		LRK54_RS06855	0.89	-0.0
1,477,318	-		LRK54_RS06855	0.89	-1.3
1,477,318	-		LRK54_RS06855	0.89	-1.2
1,477,318	-		LRK54_RS06855	0.89	-0.4
1,477,318	-		LRK54_RS06855	0.89	-0.2
1,477,318	-		LRK54_RS06855	0.89	+0.1
1,477,318	-		LRK54_RS06855	0.89	+1.0
1,477,318	-		LRK54_RS06855	0.89	-0.4
1,477,318	-		LRK54_RS06855	0.89	-2.0
1,477,318	-		LRK54_RS06855	0.89	+0.9
1,477,318	-		LRK54_RS06855	0.89	-1.0
1,477,366	+				-0.6
1,477,366	+				-0.0
1,477,366	+				+1.0
1,477,366	+				-1.1
1,477,366	+				-0.5
1,477,366	+				-0.6
1,477,366	+				-0.4
1,477,366	+				-1.7
1,477,366	+				+0.2
1,477,366	+				-0.2
1,477,366	+				-1.3
1,477,366	+				+0.1
1,477,366	+				-1.1
1,477,366	+				-0.4
1,477,366	+				-0.9
1,477,366	+				+0.7
1,477,366	+				+0.6
1,477,366	+				-1.0
1,477,366	+				+0.8
1,477,366	+				+1.0
1,477,366	+				-0.4
1,477,366	+				+0.3
1,477,366	+				+0.7
1,477,366	+				+1.9
1,477,366	+				-2.4
1,477,366	+				-1.3
1,477,366	+				-0.3
1,477,366	+				+0.3
1,477,366	+				+0.7
1,477,366	+				-1.5
1,477,366	+				+1.4
1,477,366	+				-0.2
1,477,366	+				+0.3
1,477,367	-				+0.6
1,477,367	-				+0.0
1,477,367	-				+1.3
1,477,367	-				+0.9
1,477,367	-				+0.3
1,477,367	-				-0.7
1,477,367	-				+0.8
1,477,367	-				-0.6
1,477,367	-				+0.9
1,477,367	-				-0.1
1,477,367	-				+0.0
1,477,367	-				+0.0
1,477,367	-				-0.8
1,477,367	-				+1.6
1,477,367	-				+0.3
1,477,367	-				+0.3
1,477,367	-				+0.7
1,477,367	-				-0.5
1,477,367	-				-1.0
1,477,367	-				+1.1
1,477,367	-				+0.6
1,477,367	-				+0.3
1,477,367	-				+0.6
1,477,367	-				-0.5
1,477,367	-				-0.0
1,477,367	-				+0.3
1,477,367	-				+2.0
1,477,367	-				-0.9
1,477,367	-				+0.2
1,477,367	-				+0.7
1,477,367	-				-0.2
1,477,367	-				+1.0
1,477,367	-				-0.6
1,477,367	-				-1.5
1,477,367	-				-1.0
1,477,367	-				+0.0
1,477,367	-				+0.3
1,477,367	-				-2.7
1,477,367	-				+0.6
1,477,367	-				+0.7
1,477,367	-				+0.8
1,477,367	-				+0.3
1,477,367	-				-0.2
1,477,370	+				+1.5
1,477,370	+				+1.6
1,477,370	+				+1.4
1,477,370	+				+0.0
1,477,370	+				+0.6
1,477,370	+				+0.6
1,477,370	+				+0.1
1,477,370	+				-0.8
1,477,370	+				-0.4
1,477,370	+				+0.2
1,477,370	+				+0.2
1,477,370	+				+0.7
1,477,370	+				-0.0
1,477,370	+				-0.1
1,477,370	+				+0.2
1,477,370	+				+0.2
1,477,370	+				+1.3
1,477,370	+				+0.4
1,477,370	+				+0.2
1,477,370	+				-0.2
1,477,370	+				-2.1
1,477,370	+				+2.6
1,477,370	+				-1.8
1,477,370	+				-0.3
1,477,370	+				-1.0
1,477,370	+				-0.7
1,477,371	-				-1.1
1,477,371	-				+1.0
1,477,371	-				+0.3
1,477,371	-				-1.0
1,477,371	-				-1.0
1,477,371	-				+1.6
1,477,371	-				+0.0
1,477,371	-				-0.5
1,477,371	-				-0.3
1,477,371	-				-0.7
1,477,371	-				+0.3
1,477,371	-				+0.2
1,477,371	-				+1.6
1,477,371	-				-1.8
1,477,371	-				-1.0
1,477,371	-				+1.0
1,477,371	-				+0.7
1,477,371	-				+0.4
1,477,371	-				+0.5
1,477,371	-				-0.8
1,477,371	-				-0.5
1,477,371	-				+2.9
1,477,371	-				+2.2
1,477,371	-				-1.0
1,477,371	-				-0.4
1,477,371	-				-0.3
1,477,413	+				+1.6
1,477,415	+				+0.8
1,477,415	+				+0.0
1,477,415	+				-1.7
1,477,415	+				-0.7
1,477,415	+				+0.2
1,477,415	+				-0.2
1,477,415	+				-0.6
1,477,415	+				-1.4
1,477,415	+				+1.2
1,477,415	+				-0.1
1,477,415	+				-0.1
1,477,415	+				-0.4
1,477,415	+				-0.5
1,477,415	+				+0.9
1,477,415	+				-2.4
1,477,415	+				-0.1
1,477,415	+				-0.4
1,477,415	+				-0.7
1,477,415	+				+2.0
1,477,415	+				+0.2
1,477,416	-				+0.4
1,477,416	-				+1.2
1,477,416	-				+0.0
1,477,416	-				+0.1
1,477,416	-				-2.0
1,477,416	-				-0.9
1,477,416	-				-0.7
1,477,416	-				-1.6
1,477,416	-				-1.2
1,477,416	-				-1.0
1,477,416	-				+0.5
1,477,416	-				+0.5
1,477,416	-				+2.2
1,477,487	+				-0.9
1,477,487	+				-1.5
1,477,590	+				-0.7
1,477,590	+				+1.6
1,477,590	+				+1.4
1,477,591	-				+1.5
1,477,591	-				+0.0
1,477,591	-				+0.3
1,477,591	-				+0.6
1,477,591	-				+0.2
1,477,591	-				+2.2
1,477,591	-				+1.0
1,477,591	-				-2.2
1,477,722	+		LRK54_RS06860	0.11	-0.2
1,477,722	+		LRK54_RS06860	0.11	+0.6
1,477,824	+		LRK54_RS06860	0.19	-1.4
1,477,824	+		LRK54_RS06860	0.19	-1.3
1,477,824	+		LRK54_RS06860	0.19	-1.8
1,477,824	+		LRK54_RS06860	0.19	-1.0
1,477,824	+		LRK54_RS06860	0.19	+0.6
1,477,824	+		LRK54_RS06860	0.19	-1.1
1,477,824	+		LRK54_RS06860	0.19	-0.3
1,477,824	+		LRK54_RS06860	0.19	+0.0
1,477,824	+		LRK54_RS06860	0.19	-1.6
1,477,824	+		LRK54_RS06860	0.19	-0.4
1,477,824	+		LRK54_RS06860	0.19	+0.3
1,477,824	+		LRK54_RS06860	0.19	-0.7
1,477,824	+		LRK54_RS06860	0.19	-1.6
1,477,824	+		LRK54_RS06860	0.19	+1.6
1,477,824	+		LRK54_RS06860	0.19	-0.7
1,477,824	+		LRK54_RS06860	0.19	-0.6
1,477,825	-		LRK54_RS06860	0.19	-1.5
1,477,825	-		LRK54_RS06860	0.19	-1.3
1,477,825	-		LRK54_RS06860	0.19	-0.3
1,477,825	-		LRK54_RS06860	0.19	+0.9
1,477,825	-		LRK54_RS06860	0.19	-1.4
1,477,825	-		LRK54_RS06860	0.19	-1.2
1,477,968	+		LRK54_RS06860	0.30	-0.8
1,477,968	+		LRK54_RS06860	0.30	-2.1
1,477,968	+		LRK54_RS06860	0.30	-2.6
1,477,968	+		LRK54_RS06860	0.30	-2.0
1,477,968	+		LRK54_RS06860	0.30	+0.0
1,477,968	+		LRK54_RS06860	0.30	-3.0
1,477,968	+		LRK54_RS06860	0.30	-1.2
1,477,968	+		LRK54_RS06860	0.30	+0.0
1,477,968	+		LRK54_RS06860	0.30	-1.3
1,477,968	+		LRK54_RS06860	0.30	+1.0
1,477,969	-		LRK54_RS06860	0.30	+0.0
1,477,969	-		LRK54_RS06860	0.30	-1.8
1,477,969	-		LRK54_RS06860	0.30	-1.7
1,477,969	-		LRK54_RS06860	0.30	-2.2
1,477,969	-		LRK54_RS06860	0.30	-2.1
1,477,969	-		LRK54_RS06860	0.30	+0.0
1,477,969	-		LRK54_RS06860	0.30	-2.1
1,477,969	-		LRK54_RS06860	0.30	-1.2
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1,477,969	-		LRK54_RS06860	0.30	-0.4
1,477,969	-		LRK54_RS06860	0.30	+0.0
1,478,067	+		LRK54_RS06860	0.38	-2.2
1,478,067	+		LRK54_RS06860	0.38	-1.4
1,478,067	+		LRK54_RS06860	0.38	-2.7
1,478,067	+		LRK54_RS06860	0.38	-1.4
1,478,067	+		LRK54_RS06860	0.38	-2.3
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1,478,068	-		LRK54_RS06860	0.38	-1.7
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1,478,068	-		LRK54_RS06860	0.38	-2.5
1,478,068	-		LRK54_RS06860	0.38	+0.6
1,478,068	-		LRK54_RS06860	0.38	+0.0
1,478,068	-		LRK54_RS06860	0.38	+0.4
1,478,068	-		LRK54_RS06860	0.38	-3.3
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1,478,193	+		LRK54_RS06860	0.48	-1.0
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1,478,193	+		LRK54_RS06860	0.48	-2.2
1,478,193	+		LRK54_RS06860	0.48	-0.1
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1,478,193	+		LRK54_RS06860	0.48	-1.8
1,478,193	+		LRK54_RS06860	0.48	-2.1
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1,478,193	+		LRK54_RS06860	0.48	-2.8
1,478,194	-		LRK54_RS06860	0.48	-2.6
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1,478,663	+		LRK54_RS06860	0.86	-0.1
1,478,663	+		LRK54_RS06860	0.86	-0.2
1,478,663	+		LRK54_RS06860	0.86	-0.4
1,478,663	+		LRK54_RS06860	0.86	-1.3
1,478,663	+		LRK54_RS06860	0.86	-0.7
1,478,663	+		LRK54_RS06860	0.86	-2.0
1,478,663	+		LRK54_RS06860	0.86	-1.7
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1,478,664	-		LRK54_RS06860	0.86	-1.0
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1,478,664	-		LRK54_RS06860	0.86	-0.7
1,478,754	+				-2.3
1,478,754	+				-0.4
1,478,754	+				-1.5
1,478,754	+				-2.3
1,478,754	+				-3.3
1,478,754	+				-1.4
1,478,755	-				-2.2
1,478,755	-				-1.8
1,478,755	-				-1.5
1,478,755	-				-0.4
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1,478,755	-				-0.2
1,478,829	+				-2.1
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1,478,829	+				-3.3
1,478,829	+				-0.7
1,478,829	+				-3.0
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1,478,830	-				-2.1
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1,478,830	-				-1.0
1,479,068	+		LRK54_RS06865	0.20	-2.9
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1,479,069	-		LRK54_RS06865	0.20	-1.8
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1,479,473	+		LRK54_RS06865	0.55	-1.2
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1,479,473	+		LRK54_RS06865	0.55	-1.8
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1,479,473	+		LRK54_RS06865	0.55	-3.0
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1,479,474	-		LRK54_RS06865	0.55	-3.0
1,479,789	-		LRK54_RS06865	0.83	+0.0
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1,479,789	-		LRK54_RS06865	0.83	-1.1
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