Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05760

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
1,244,365	+				+0.4
1,244,365	+				-1.7
1,244,365	+				-3.0
1,244,365	+				+0.2
1,244,365	+				-0.4
1,244,365	+				-1.0
1,244,366	-				-1.2
1,244,366	-				+0.8
1,244,366	-				-0.7
1,244,366	-				+0.6
1,244,366	-				+0.2
1,244,366	-				+0.8
1,244,376	+				+0.1
1,244,376	+				+0.5
1,244,389	+				-0.1
1,244,390	-				-1.1
1,244,390	-				-1.0
1,244,390	-				+0.0
1,244,390	-				-0.3
1,244,390	-				-1.5
1,244,390	-				+0.4
1,244,390	-				+0.3
1,244,390	-				+1.1
1,244,420	+				+0.0
1,244,420	+				+0.3
1,244,420	+				+0.6
1,244,420	+				+1.0
1,244,420	+				-0.1
1,244,420	+				-2.0
1,244,420	+				+0.4
1,244,420	+				-1.7
1,244,420	+				-0.1
1,244,421	-				-0.3
1,244,421	-				-0.6
1,244,421	-				+0.3
1,244,421	-				-0.5
1,244,421	-				+1.6
1,244,421	-				+0.2
1,244,426	+				+0.2
1,244,426	+				+0.4
1,244,426	+				-1.0
1,244,426	+				+0.5
1,244,426	+				+0.7
1,244,426	+				+1.1
1,244,427	-				-0.9
1,244,427	-				+0.6
1,244,427	-				-1.9
1,244,427	-				-1.4
1,244,427	-				-0.9
1,244,427	-				-0.5
1,244,427	-				-0.9
1,244,427	-				-0.6
1,244,427	-				-1.4
1,244,427	-				-0.6
1,244,507	+				-0.1
1,244,507	+				-0.7
1,244,507	+				-0.7
1,244,507	+				-0.7
1,244,507	+				-0.2
1,244,507	+				+0.9
1,244,507	+				-0.7
1,244,507	+				-1.4
1,244,507	+				-1.3
1,244,507	+				-0.1
1,244,507	+				-0.3
1,244,507	+				-2.3
1,244,507	+				+0.6
1,244,507	+				-0.1
1,244,507	+				-1.1
1,244,507	+				-0.4
1,244,507	+				+1.6
1,244,507	+				-1.4
1,244,507	+				+1.1
1,244,508	-				-0.9
1,244,508	-				+0.2
1,244,508	-				+0.6
1,244,508	-				+0.8
1,244,508	-				+1.4
1,244,508	-				+0.0
1,244,508	-				-0.2
1,244,508	-				+0.4
1,244,508	-				+0.1
1,244,508	-				+0.5
1,244,696	+		LRK54_RS05755	0.29	-1.0
1,244,697	-		LRK54_RS05755	0.29	+0.9
1,244,717	+		LRK54_RS05755	0.32	+0.8
1,244,717	+		LRK54_RS05755	0.32	+1.6
1,244,717	+		LRK54_RS05755	0.32	+0.1
1,244,717	+		LRK54_RS05755	0.32	-1.1
1,244,717	+		LRK54_RS05755	0.32	-1.6
1,244,717	+		LRK54_RS05755	0.32	-0.4
1,244,717	+		LRK54_RS05755	0.32	-0.4
1,244,717	+		LRK54_RS05755	0.32	-0.3
1,244,717	+		LRK54_RS05755	0.32	+0.6
1,244,717	+		LRK54_RS05755	0.32	-1.1
1,244,717	+		LRK54_RS05755	0.32	-1.6
1,244,717	+		LRK54_RS05755	0.32	-0.2
1,244,717	+		LRK54_RS05755	0.32	-0.1
1,244,717	+		LRK54_RS05755	0.32	-0.7
1,244,717	+		LRK54_RS05755	0.32	-0.3
1,244,718	-		LRK54_RS05755	0.32	-0.9
1,244,718	-		LRK54_RS05755	0.32	+2.2
1,244,718	-		LRK54_RS05755	0.32	-0.7
1,244,718	-		LRK54_RS05755	0.32	-0.4
1,244,718	-		LRK54_RS05755	0.32	-1.1
1,244,718	-		LRK54_RS05755	0.32	-1.7
1,244,718	-		LRK54_RS05755	0.32	+0.7
1,244,718	-		LRK54_RS05755	0.32	-0.2
1,244,718	-		LRK54_RS05755	0.32	-0.5
1,244,718	-		LRK54_RS05755	0.32	-0.7
1,244,718	-		LRK54_RS05755	0.32	+0.6
1,244,718	-		LRK54_RS05755	0.32	-1.5
1,244,718	-		LRK54_RS05755	0.32	-1.6
1,244,718	-		LRK54_RS05755	0.32	+0.3
1,244,718	-		LRK54_RS05755	0.32	-1.2
1,244,718	-		LRK54_RS05755	0.32	+1.2
1,244,718	-		LRK54_RS05755	0.32	-0.7
1,244,720	-		LRK54_RS05755	0.33	-0.1
1,244,783	+		LRK54_RS05755	0.43	-1.6
1,244,784	-		LRK54_RS05755	0.43	-1.4
1,244,784	-		LRK54_RS05755	0.43	+0.3
1,244,901	+		LRK54_RS05755	0.61	-0.6
1,244,901	+		LRK54_RS05755	0.61	+1.6
1,244,901	+		LRK54_RS05755	0.61	-0.4
1,244,901	+		LRK54_RS05755	0.61	-0.3
1,244,901	+		LRK54_RS05755	0.61	-1.7
1,244,901	+		LRK54_RS05755	0.61	-0.8
1,244,901	+		LRK54_RS05755	0.61	-0.4
1,244,901	+		LRK54_RS05755	0.61	-3.0
1,244,901	+		LRK54_RS05755	0.61	+0.1
1,244,901	+		LRK54_RS05755	0.61	-1.1
1,244,901	+		LRK54_RS05755	0.61	+0.4
1,244,901	+		LRK54_RS05755	0.61	+0.7
1,244,901	+		LRK54_RS05755	0.61	-0.7
1,244,901	+		LRK54_RS05755	0.61	+0.5
1,244,901	+		LRK54_RS05755	0.61	-0.4
1,244,901	+		LRK54_RS05755	0.61	-0.1
1,244,901	+		LRK54_RS05755	0.61	+0.7
1,244,901	+		LRK54_RS05755	0.61	-0.5
1,244,901	+		LRK54_RS05755	0.61	-0.3
1,244,901	+		LRK54_RS05755	0.61	-0.4
1,244,901	+		LRK54_RS05755	0.61	-0.4
1,244,902	-		LRK54_RS05755	0.61	+0.5
1,244,902	-		LRK54_RS05755	0.61	+0.1
1,244,902	-		LRK54_RS05755	0.61	-0.5
1,244,902	-		LRK54_RS05755	0.61	+0.4
1,244,902	-		LRK54_RS05755	0.61	-1.1
1,244,902	-		LRK54_RS05755	0.61	-1.0
1,244,902	-		LRK54_RS05755	0.61	-0.4
1,244,902	-		LRK54_RS05755	0.61	+0.5
1,244,902	-		LRK54_RS05755	0.61	-0.5
1,244,902	-		LRK54_RS05755	0.61	+0.3
1,244,902	-		LRK54_RS05755	0.61	-0.7
1,244,902	-		LRK54_RS05755	0.61	-0.1
1,244,902	-		LRK54_RS05755	0.61	+0.0
1,244,902	-		LRK54_RS05755	0.61	+1.2
1,244,902	-		LRK54_RS05755	0.61	-2.4
1,244,902	-		LRK54_RS05755	0.61	+0.0
1,244,902	-		LRK54_RS05755	0.61	-0.7
1,244,902	-		LRK54_RS05755	0.61	-2.4
1,244,902	-		LRK54_RS05755	0.61	-1.2
1,244,902	-		LRK54_RS05755	0.61	-0.3
1,244,902	-		LRK54_RS05755	0.61	-1.4
1,244,902	-		LRK54_RS05755	0.61	+0.0
1,244,915	+		LRK54_RS05755	0.64	-1.3
1,244,915	+		LRK54_RS05755	0.64	-1.0
1,244,915	+		LRK54_RS05755	0.64	+0.0
1,244,915	+		LRK54_RS05755	0.64	-0.7
1,244,915	+		LRK54_RS05755	0.64	+0.2
1,244,915	+		LRK54_RS05755	0.64	-0.3
1,244,915	+		LRK54_RS05755	0.64	+0.0
1,244,916	-		LRK54_RS05755	0.64	-1.7
1,244,916	-		LRK54_RS05755	0.64	+1.6
1,244,916	-		LRK54_RS05755	0.64	-0.1
1,244,916	-		LRK54_RS05755	0.64	+0.6
1,244,916	-		LRK54_RS05755	0.64	-0.1
1,244,916	-		LRK54_RS05755	0.64	-0.9
1,244,916	-		LRK54_RS05755	0.64	-1.6
1,244,916	-		LRK54_RS05755	0.64	-0.3
1,244,916	-		LRK54_RS05755	0.64	-1.2
1,244,916	-		LRK54_RS05755	0.64	-1.3
1,244,939	+		LRK54_RS05755	0.67	+0.8
1,244,939	+		LRK54_RS05755	0.67	+1.5
1,244,939	+		LRK54_RS05755	0.67	+2.0
1,244,940	-		LRK54_RS05755	0.67	+1.2
1,244,940	-		LRK54_RS05755	0.67	-1.2
1,244,940	-		LRK54_RS05755	0.67	-0.7
1,244,940	-		LRK54_RS05755	0.67	-1.0
1,244,940	-		LRK54_RS05755	0.67	-1.7
1,244,940	-		LRK54_RS05755	0.67	+0.1
1,244,960	+		LRK54_RS05755	0.71	+0.3
1,244,960	+		LRK54_RS05755	0.71	+0.1
1,244,960	+		LRK54_RS05755	0.71	-1.6
1,244,960	+		LRK54_RS05755	0.71	+0.6
1,244,961	-		LRK54_RS05755	0.71	-1.0
1,244,961	-		LRK54_RS05755	0.71	+1.0
1,245,008	+		LRK54_RS05755	0.78	-0.4
1,245,009	-		LRK54_RS05755	0.78	+0.1
1,245,009	-		LRK54_RS05755	0.78	-1.0
1,245,065	+		LRK54_RS05755	0.87	-0.2
1,245,065	+		LRK54_RS05755	0.87	-0.1
1,245,065	+		LRK54_RS05755	0.87	+1.0
1,245,065	+		LRK54_RS05755	0.87	+0.8
1,245,065	+		LRK54_RS05755	0.87	-1.0
1,245,065	+		LRK54_RS05755	0.87	+0.8
1,245,065	+		LRK54_RS05755	0.87	+0.8
1,245,065	+		LRK54_RS05755	0.87	+0.0
1,245,065	+		LRK54_RS05755	0.87	+0.6
1,245,066	-		LRK54_RS05755	0.87	+0.6
1,245,066	-		LRK54_RS05755	0.87	-1.4
1,245,066	-		LRK54_RS05755	0.87	-1.9
1,245,071	+		LRK54_RS05755	0.88	-0.3
1,245,071	+		LRK54_RS05755	0.88	+0.1
1,245,071	+		LRK54_RS05755	0.88	-0.7
1,245,071	+		LRK54_RS05755	0.88	+0.6
1,245,071	+		LRK54_RS05755	0.88	+0.1
1,245,071	+		LRK54_RS05755	0.88	-0.7
1,245,071	+		LRK54_RS05755	0.88	-0.0
1,245,071	+		LRK54_RS05755	0.88	+1.0
1,245,071	+		LRK54_RS05755	0.88	+0.2
1,245,071	+		LRK54_RS05755	0.88	+1.4
1,245,071	+		LRK54_RS05755	0.88	+0.4
1,245,071	+		LRK54_RS05755	0.88	+0.9
1,245,071	+		LRK54_RS05755	0.88	+0.7
1,245,071	+		LRK54_RS05755	0.88	-2.0
1,245,071	+		LRK54_RS05755	0.88	+0.8
1,245,071	+		LRK54_RS05755	0.88	+0.2
1,245,071	+		LRK54_RS05755	0.88	+0.1
1,245,071	+		LRK54_RS05755	0.88	-0.2
1,245,071	+		LRK54_RS05755	0.88	+0.2
1,245,071	+		LRK54_RS05755	0.88	+0.3
1,245,072	-		LRK54_RS05755	0.88	+0.6
1,245,072	-		LRK54_RS05755	0.88	-1.2
1,245,072	-		LRK54_RS05755	0.88	+0.3
1,245,072	-		LRK54_RS05755	0.88	+0.9
1,245,072	-		LRK54_RS05755	0.88	+0.0
1,245,072	-		LRK54_RS05755	0.88	-0.2
1,245,072	-		LRK54_RS05755	0.88	-0.7
1,245,072	-		LRK54_RS05755	0.88	-0.2
1,245,072	-		LRK54_RS05755	0.88	-0.5
1,245,072	-		LRK54_RS05755	0.88	-1.1
1,245,072	-		LRK54_RS05755	0.88	-0.6
1,245,072	-		LRK54_RS05755	0.88	-0.2
1,245,072	-		LRK54_RS05755	0.88	-0.6
1,245,072	-		LRK54_RS05755	0.88	+1.0
1,245,072	-		LRK54_RS05755	0.88	+3.9
1,245,072	-		LRK54_RS05755	0.88	+1.2
1,245,072	-		LRK54_RS05755	0.88	+0.5
1,245,072	-		LRK54_RS05755	0.88	-0.8
1,245,072	-		LRK54_RS05755	0.88	-0.4
1,245,074	+		LRK54_RS05755	0.89	+0.9
1,245,074	+		LRK54_RS05755	0.89	+1.8
1,245,074	+		LRK54_RS05755	0.89	-2.2
1,245,074	+		LRK54_RS05755	0.89	-2.1
1,245,074	+		LRK54_RS05755	0.89	+0.4
1,245,074	+		LRK54_RS05755	0.89	-1.4
1,245,074	+		LRK54_RS05755	0.89	-0.4
1,245,074	+		LRK54_RS05755	0.89	-0.5
1,245,074	+		LRK54_RS05755	0.89	+3.2
1,245,074	+		LRK54_RS05755	0.89	+0.8
1,245,074	+		LRK54_RS05755	0.89	-0.2
1,245,074	+		LRK54_RS05755	0.89	-1.1
1,245,074	+		LRK54_RS05755	0.89	+0.1
1,245,074	+		LRK54_RS05755	0.89	-0.0
1,245,075	-		LRK54_RS05755	0.89	-0.6
1,245,075	-		LRK54_RS05755	0.89	+1.0
1,245,075	-		LRK54_RS05755	0.89	-0.4
1,245,075	-		LRK54_RS05755	0.89	+0.0
1,245,075	-		LRK54_RS05755	0.89	-2.2
1,245,075	-		LRK54_RS05755	0.89	-0.8
1,245,075	-		LRK54_RS05755	0.89	-0.2
1,245,075	-		LRK54_RS05755	0.89	+0.0
1,245,075	-		LRK54_RS05755	0.89	+0.6
1,245,075	-		LRK54_RS05755	0.89	+0.1
1,245,075	-		LRK54_RS05755	0.89	+0.0
1,245,075	-		LRK54_RS05755	0.89	+0.6
1,245,075	-		LRK54_RS05755	0.89	+0.3
1,245,075	-		LRK54_RS05755	0.89	-0.7
1,245,135	-				-1.2
1,245,135	-				-0.3
1,245,165	+				+0.6
1,245,165	+				-0.7
1,245,176	+				-0.2
1,245,177	-				-1.3
1,245,179	+				-0.6
1,245,180	-				-1.0
1,245,222	+				+0.6
1,245,222	+				+0.2
1,245,222	+				-0.3
1,245,222	+				-0.3
1,245,222	+				-0.4
1,245,222	+				+0.6
1,245,222	+				-0.2
1,245,222	+				+2.2
1,245,222	+				+0.4
1,245,222	+				-0.8
1,245,222	+				-0.0
1,245,222	+				-0.7
1,245,222	+				-0.7
1,245,222	+				+0.3
1,245,222	+				+2.2
1,245,222	+				+0.6
1,245,222	+				-1.7
1,245,222	+				+0.6
1,245,222	+				-2.6
1,245,222	+				-0.4
1,245,222	+				-0.1
1,245,222	+				-1.3
1,245,222	+				+0.0
1,245,222	+				-0.5
1,245,222	+				-0.5
1,245,222	+				-0.4
1,245,222	+				-0.7
1,245,222	+				-1.1
1,245,222	+				-0.7
1,245,222	+				-0.9
1,245,222	+				-1.0
1,245,222	+				-0.0
1,245,222	+				-1.2
1,245,222	+				-0.4
1,245,222	+				-1.2
1,245,222	+				-0.2
1,245,222	+				-1.3
1,245,222	+				-0.7
1,245,222	+				+0.6
1,245,222	+				-1.6
1,245,223	-				-0.2
1,245,223	-				+0.6
1,245,223	-				-1.4
1,245,223	-				+0.3
1,245,223	-				-0.8
1,245,223	-				+1.6
1,245,223	-				-2.8
1,245,223	-				-1.1
1,245,223	-				-0.7
1,245,223	-				-1.7
1,245,223	-				-1.0
1,245,223	-				-3.3
1,245,223	-				-1.6
1,245,223	-				-3.9
1,245,223	-				-1.5
1,245,223	-				-2.7
1,245,223	-				-0.2
1,245,223	-				-0.4
1,245,223	-				-1.9
1,245,223	-				-2.6
1,245,223	-				-1.8
1,245,223	-				-0.9
1,245,223	-				-0.3
1,245,223	-				-1.6
1,245,470	+		LRK54_RS05760	0.25	-1.6
1,245,470	+		LRK54_RS05760	0.25	+0.3
1,245,471	-		LRK54_RS05760	0.25	-0.3
1,245,471	-		LRK54_RS05760	0.25	-3.1
1,245,557	+		LRK54_RS05760	0.40	+1.6
1,245,557	+		LRK54_RS05760	0.40	-1.2
1,245,557	+		LRK54_RS05760	0.40	+0.9
1,245,557	+		LRK54_RS05760	0.40	-2.5
1,245,557	+		LRK54_RS05760	0.40	-0.6
1,245,557	+		LRK54_RS05760	0.40	-1.6
1,245,557	+		LRK54_RS05760	0.40	-1.2
1,245,557	+		LRK54_RS05760	0.40	-1.0
1,245,557	+		LRK54_RS05760	0.40	-1.2
1,245,557	+		LRK54_RS05760	0.40	-0.2
1,245,557	+		LRK54_RS05760	0.40	-2.7
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1,246,719	-		LRK54_RS05765	0.62	-0.7
1,246,719	-		LRK54_RS05765	0.62	-1.9
1,246,719	-		LRK54_RS05765	0.62	+0.8
1,246,719	-		LRK54_RS05765	0.62	-1.2
1,246,719	-		LRK54_RS05765	0.62	-2.3
1,246,719	-		LRK54_RS05765	0.62	-1.6
1,246,719	-		LRK54_RS05765	0.62	-1.4
1,246,892	+		LRK54_RS05765	0.80	-3.0
1,246,892	+		LRK54_RS05765	0.80	-0.7
1,246,892	+		LRK54_RS05765	0.80	-0.6
1,246,892	+		LRK54_RS05765	0.80	-1.7
1,246,892	+		LRK54_RS05765	0.80	-0.4
1,246,893	-		LRK54_RS05765	0.80	-2.0
1,246,893	-		LRK54_RS05765	0.80	-2.1
1,246,893	-		LRK54_RS05765	0.80	+1.6