Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04290

Experiment: R2A with sodium bromide 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04285 and LRK54_RS04290 are separated by 51 nucleotidesLRK54_RS04290 and LRK54_RS04295 are separated by 110 nucleotidesLRK54_RS04295 and LRK54_RS04300 are separated by 24 nucleotides LRK54_RS04285: LRK54_RS04285 - kinase, at 907,557 to 908,387 _RS04285 LRK54_RS04290: LRK54_RS04290 - dodecin family protein, at 908,439 to 908,642 _RS04290 LRK54_RS04295: LRK54_RS04295 - YbjQ family protein, at 908,753 to 909,097 _RS04295 LRK54_RS04300: LRK54_RS04300 - SDR family oxidoreductase, at 909,122 to 909,955 _RS04300 Position (kb) 908 909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 907.614 kb on + strandat 907.614 kb on + strandat 907.614 kb on + strandat 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.647 kb on + strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.648 kb on - strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.764 kb on + strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.765 kb on - strand, within LRK54_RS04285at 907.767 kb on + strand, within LRK54_RS04285at 907.768 kb on - strand, within LRK54_RS04285at 907.768 kb on - strand, within LRK54_RS04285at 907.832 kb on - strand, within LRK54_RS04285at 908.125 kb on - strand, within LRK54_RS04285at 908.346 kb on + strandat 908.347 kb on - strandat 908.347 kb on - strandat 908.788 kb on - strand, within LRK54_RS04295at 908.788 kb on - strand, within LRK54_RS04295at 908.832 kb on + strand, within LRK54_RS04295at 908.832 kb on + strand, within LRK54_RS04295at 908.832 kb on + strand, within LRK54_RS04295at 908.832 kb on + strand, within LRK54_RS04295at 908.833 kb on - strand, within LRK54_RS04295at 908.926 kb on + strand, within LRK54_RS04295at 908.926 kb on + strand, within LRK54_RS04295at 908.927 kb on - strand, within LRK54_RS04295at 908.927 kb on - strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.928 kb on + strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 908.929 kb on - strand, within LRK54_RS04295at 909.144 kb on + strandat 909.144 kb on + strandat 909.144 kb on + strandat 909.144 kb on + strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium bromide 250 mM
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907,614 + +0.8
907,614 + +0.9
907,614 + +0.6
907,647 + LRK54_RS04285 0.11 +0.9
907,647 + LRK54_RS04285 0.11 +0.7
907,647 + LRK54_RS04285 0.11 +0.0
907,647 + LRK54_RS04285 0.11 -0.2
907,647 + LRK54_RS04285 0.11 +1.6
907,647 + LRK54_RS04285 0.11 -1.8
907,647 + LRK54_RS04285 0.11 +1.8
907,648 - LRK54_RS04285 0.11 +1.0
907,648 - LRK54_RS04285 0.11 +0.8
907,648 - LRK54_RS04285 0.11 +0.3
907,648 - LRK54_RS04285 0.11 -0.1
907,648 - LRK54_RS04285 0.11 +1.0
907,648 - LRK54_RS04285 0.11 +0.6
907,648 - LRK54_RS04285 0.11 +2.3
907,648 - LRK54_RS04285 0.11 +0.7
907,648 - LRK54_RS04285 0.11 +0.5
907,648 - LRK54_RS04285 0.11 +0.6
907,648 - LRK54_RS04285 0.11 -0.7
907,648 - LRK54_RS04285 0.11 +2.3
907,648 - LRK54_RS04285 0.11 +1.0
907,648 - LRK54_RS04285 0.11 -0.6
907,648 - LRK54_RS04285 0.11 +0.9
907,764 + LRK54_RS04285 0.25 +0.8
907,764 + LRK54_RS04285 0.25 +0.6
907,764 + LRK54_RS04285 0.25 +1.2
907,764 + LRK54_RS04285 0.25 +0.6
907,764 + LRK54_RS04285 0.25 +0.7
907,764 + LRK54_RS04285 0.25 +0.0
907,764 + LRK54_RS04285 0.25 +1.4
907,764 + LRK54_RS04285 0.25 +1.1
907,764 + LRK54_RS04285 0.25 +1.1
907,764 + LRK54_RS04285 0.25 +1.4
907,764 + LRK54_RS04285 0.25 +0.9
907,764 + LRK54_RS04285 0.25 +1.4
907,764 + LRK54_RS04285 0.25 +1.1
907,764 + LRK54_RS04285 0.25 +1.4
907,764 + LRK54_RS04285 0.25 +1.3
907,764 + LRK54_RS04285 0.25 -0.0
907,764 + LRK54_RS04285 0.25 +0.8
907,764 + LRK54_RS04285 0.25 +1.6
907,764 + LRK54_RS04285 0.25 +1.2
907,764 + LRK54_RS04285 0.25 +1.3
907,764 + LRK54_RS04285 0.25 +0.3
907,764 + LRK54_RS04285 0.25 +1.6
907,765 - LRK54_RS04285 0.25 +0.8
907,765 - LRK54_RS04285 0.25 +2.0
907,765 - LRK54_RS04285 0.25 +0.6
907,765 - LRK54_RS04285 0.25 +0.3
907,765 - LRK54_RS04285 0.25 +1.1
907,765 - LRK54_RS04285 0.25 +0.9
907,765 - LRK54_RS04285 0.25 +1.0
907,765 - LRK54_RS04285 0.25 +0.0
907,765 - LRK54_RS04285 0.25 +1.0
907,765 - LRK54_RS04285 0.25 +1.7
907,765 - LRK54_RS04285 0.25 +0.5
907,765 - LRK54_RS04285 0.25 +0.7
907,767 + LRK54_RS04285 0.25 +0.2
907,768 - LRK54_RS04285 0.25 +1.0
907,768 - LRK54_RS04285 0.25 +0.4
907,832 - LRK54_RS04285 0.33 +0.6
908,125 - LRK54_RS04285 0.68 +0.2
908,346 + -0.6
908,347 - +2.5
908,347 - +0.7
908,788 - LRK54_RS04295 0.10 -1.0
908,788 - LRK54_RS04295 0.10 -0.2
908,832 + LRK54_RS04295 0.23 +0.3
908,832 + LRK54_RS04295 0.23 -1.6
908,832 + LRK54_RS04295 0.23 -0.3
908,832 + LRK54_RS04295 0.23 -2.6
908,833 - LRK54_RS04295 0.23 -2.1
908,926 + LRK54_RS04295 0.50 +0.6
908,926 + LRK54_RS04295 0.50 +0.7
908,927 - LRK54_RS04295 0.50 -0.3
908,927 - LRK54_RS04295 0.50 -0.5
908,928 + LRK54_RS04295 0.51 +1.4
908,928 + LRK54_RS04295 0.51 -0.9
908,928 + LRK54_RS04295 0.51 -1.2
908,928 + LRK54_RS04295 0.51 +0.0
908,928 + LRK54_RS04295 0.51 -1.5
908,928 + LRK54_RS04295 0.51 +0.6
908,928 + LRK54_RS04295 0.51 +1.8
908,928 + LRK54_RS04295 0.51 +0.6
908,928 + LRK54_RS04295 0.51 -0.6
908,928 + LRK54_RS04295 0.51 +0.3
908,928 + LRK54_RS04295 0.51 +0.8
908,929 - LRK54_RS04295 0.51 +0.0
908,929 - LRK54_RS04295 0.51 -0.3
908,929 - LRK54_RS04295 0.51 +0.3
908,929 - LRK54_RS04295 0.51 -1.4
908,929 - LRK54_RS04295 0.51 -1.2
908,929 - LRK54_RS04295 0.51 -0.1
908,929 - LRK54_RS04295 0.51 +0.3
908,929 - LRK54_RS04295 0.51 -0.8
908,929 - LRK54_RS04295 0.51 +0.2
908,929 - LRK54_RS04295 0.51 -0.4
909,144 + -1.8
909,144 + -0.8
909,144 + -1.2
909,144 + -0.6
909,145 - +0.5
909,145 - +0.2
909,145 - -0.2
909,145 - -1.2
909,285 + LRK54_RS04300 0.20 +0.0
909,285 + LRK54_RS04300 0.20 +0.3
909,285 + LRK54_RS04300 0.20 -1.3
909,285 + LRK54_RS04300 0.20 -0.3
909,285 + LRK54_RS04300 0.20 +0.5
909,285 + LRK54_RS04300 0.20 +0.7
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 +0.9
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 +0.1
909,285 + LRK54_RS04300 0.20 +0.0
909,285 + LRK54_RS04300 0.20 +0.0
909,285 + LRK54_RS04300 0.20 -0.1
909,285 + LRK54_RS04300 0.20 +1.3
909,285 + LRK54_RS04300 0.20 -3.0
909,285 + LRK54_RS04300 0.20 +2.0
909,285 + LRK54_RS04300 0.20 -0.2
909,285 + LRK54_RS04300 0.20 +0.3
909,285 + LRK54_RS04300 0.20 +1.6
909,285 + LRK54_RS04300 0.20 +1.3
909,285 + LRK54_RS04300 0.20 -0.2
909,285 + LRK54_RS04300 0.20 +0.6
909,285 + LRK54_RS04300 0.20 -0.8
909,285 + LRK54_RS04300 0.20 -0.3
909,286 - LRK54_RS04300 0.20 +0.8
909,286 - LRK54_RS04300 0.20 +0.5
909,286 - LRK54_RS04300 0.20 +0.4
909,286 - LRK54_RS04300 0.20 -1.2
909,286 - LRK54_RS04300 0.20 +0.1
909,286 - LRK54_RS04300 0.20 +0.2
909,286 - LRK54_RS04300 0.20 +0.1
909,286 - LRK54_RS04300 0.20 +0.5
909,286 - LRK54_RS04300 0.20 +0.8
909,286 - LRK54_RS04300 0.20 -0.4
909,286 - LRK54_RS04300 0.20 -1.4
909,286 - LRK54_RS04300 0.20 -0.6
909,286 - LRK54_RS04300 0.20 +0.0
909,286 - LRK54_RS04300 0.20 +0.0
909,286 - LRK54_RS04300 0.20 +1.1
909,286 - LRK54_RS04300 0.20 +0.9
909,286 - LRK54_RS04300 0.20 +3.6
909,286 - LRK54_RS04300 0.20 -0.2
909,286 - LRK54_RS04300 0.20 +0.5
909,286 - LRK54_RS04300 0.20 +1.5
909,286 - LRK54_RS04300 0.20 +0.6
909,286 - LRK54_RS04300 0.20 -0.2
909,286 - LRK54_RS04300 0.20 +0.9
909,286 - LRK54_RS04300 0.20 +1.0
909,327 + LRK54_RS04300 0.25 +0.0
909,327 + LRK54_RS04300 0.25 -0.2
909,327 + LRK54_RS04300 0.25 -0.7
909,327 + LRK54_RS04300 0.25 +2.9
909,327 + LRK54_RS04300 0.25 -2.3
909,327 + LRK54_RS04300 0.25 +0.5
909,327 + LRK54_RS04300 0.25 +0.8
909,327 + LRK54_RS04300 0.25 -0.4
909,327 + LRK54_RS04300 0.25 -0.5
909,327 + LRK54_RS04300 0.25 +0.0
909,327 + LRK54_RS04300 0.25 +0.7
909,328 - LRK54_RS04300 0.25 -0.7
909,328 - LRK54_RS04300 0.25 +0.0
909,328 - LRK54_RS04300 0.25 +2.2
909,328 - LRK54_RS04300 0.25 +1.0
909,328 - LRK54_RS04300 0.25 -0.5
909,328 - LRK54_RS04300 0.25 +1.3
909,480 + LRK54_RS04300 0.43 +0.8
909,480 + LRK54_RS04300 0.43 +0.7
909,480 + LRK54_RS04300 0.43 -1.7
909,481 - LRK54_RS04300 0.43 -2.0
909,481 - LRK54_RS04300 0.43 -0.2
909,481 - LRK54_RS04300 0.43 +0.3
909,481 - LRK54_RS04300 0.43 +0.2
909,481 - LRK54_RS04300 0.43 +1.0
909,621 + LRK54_RS04300 0.60 -1.3
909,621 + LRK54_RS04300 0.60 +1.6
909,621 + LRK54_RS04300 0.60 -0.5
909,622 - LRK54_RS04300 0.60 -1.6
909,622 - LRK54_RS04300 0.60 +0.6
909,622 - LRK54_RS04300 0.60 -0.3
909,623 + LRK54_RS04300 0.60 +0.4
909,623 + LRK54_RS04300 0.60 +1.0
909,623 + LRK54_RS04300 0.60 +0.6
909,624 - LRK54_RS04300 0.60 -1.2
909,624 - LRK54_RS04300 0.60 -0.8
909,624 - LRK54_RS04300 0.60 +0.4
909,624 - LRK54_RS04300 0.60 +0.3
909,624 - LRK54_RS04300 0.60 +1.0
909,624 - LRK54_RS04300 0.60 +0.3
909,624 - LRK54_RS04300 0.60 -1.3
909,624 - LRK54_RS04300 0.60 -0.2
909,624 - LRK54_RS04300 0.60 +0.6
909,624 - LRK54_RS04300 0.60 -1.0

Or see this region's nucleotide sequence