Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03765

Experiment: R2A with sodium bromide 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03755 and LRK54_RS03760 are separated by 64 nucleotidesLRK54_RS03760 and LRK54_RS03765 are separated by 263 nucleotidesLRK54_RS03765 and LRK54_RS03770 are separated by 67 nucleotidesLRK54_RS03770 and LRK54_RS03775 are separated by 80 nucleotidesLRK54_RS03775 and LRK54_RS03780 are separated by 96 nucleotides LRK54_RS03755: LRK54_RS03755 - hypothetical protein, at 794,075 to 794,854 _RS03755 LRK54_RS03760: LRK54_RS03760 - DUF2321 domain-containing protein, at 794,919 to 795,368 _RS03760 LRK54_RS03765: LRK54_RS03765 - hypothetical protein, at 795,632 to 795,958 _RS03765 LRK54_RS03770: LRK54_RS03770 - hypothetical protein, at 796,026 to 796,481 _RS03770 LRK54_RS03775: LRK54_RS03775 - hypothetical protein, at 796,562 to 796,843 _RS03775 LRK54_RS03780: LRK54_RS03780 - hypothetical protein, at 796,940 to 797,416 _RS03780 Position (kb) 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 794.643 kb on - strand, within LRK54_RS03755at 794.659 kb on + strand, within LRK54_RS03755at 794.663 kb on + strand, within LRK54_RS03755at 794.667 kb on + strand, within LRK54_RS03755at 794.668 kb on - strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.747 kb on - strand, within LRK54_RS03755at 794.904 kb on + strandat 794.904 kb on + strandat 794.905 kb on - strandat 794.905 kb on - strandat 794.920 kb on + strandat 794.938 kb on - strandat 794.960 kb on + strandat 794.961 kb on - strandat 795.045 kb on + strand, within LRK54_RS03760at 795.045 kb on + strand, within LRK54_RS03760at 795.045 kb on + strand, within LRK54_RS03760at 795.046 kb on - strand, within LRK54_RS03760at 795.046 kb on - strand, within LRK54_RS03760at 795.063 kb on - strand, within LRK54_RS03760at 795.076 kb on - strand, within LRK54_RS03760at 795.081 kb on + strand, within LRK54_RS03760at 795.082 kb on - strand, within LRK54_RS03760at 795.117 kb on + strand, within LRK54_RS03760at 795.161 kb on + strand, within LRK54_RS03760at 795.162 kb on - strand, within LRK54_RS03760at 795.194 kb on + strand, within LRK54_RS03760at 795.195 kb on - strand, within LRK54_RS03760at 795.195 kb on - strand, within LRK54_RS03760at 795.196 kb on + strand, within LRK54_RS03760at 795.253 kb on + strand, within LRK54_RS03760at 795.253 kb on + strand, within LRK54_RS03760at 795.254 kb on - strand, within LRK54_RS03760at 795.254 kb on - strand, within LRK54_RS03760at 795.265 kb on - strand, within LRK54_RS03760at 795.265 kb on - strand, within LRK54_RS03760at 795.294 kb on - strand, within LRK54_RS03760at 795.345 kb on + strandat 795.346 kb on - strandat 795.360 kb on - strandat 795.410 kb on + strandat 795.410 kb on + strandat 795.444 kb on - strandat 795.476 kb on + strandat 795.477 kb on - strandat 795.513 kb on - strandat 795.513 kb on - strandat 795.577 kb on - strandat 795.596 kb on + strandat 795.609 kb on - strandat 795.629 kb on + strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.682 kb on - strand, within LRK54_RS03765at 795.888 kb on - strand, within LRK54_RS03765at 795.909 kb on + strand, within LRK54_RS03765at 795.910 kb on - strand, within LRK54_RS03765at 795.930 kb on + strandat 795.931 kb on - strandat 795.931 kb on - strandat 795.958 kb on + strandat 795.959 kb on - strandat 795.959 kb on - strandat 796.027 kb on + strandat 796.082 kb on - strand, within LRK54_RS03770at 796.082 kb on - strand, within LRK54_RS03770at 796.142 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.377 kb on + strand, within LRK54_RS03770at 796.378 kb on - strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.465 kb on + strandat 796.465 kb on + strandat 796.466 kb on - strandat 796.466 kb on - strandat 796.481 kb on + strandat 796.482 kb on - strandat 796.501 kb on - strandat 796.563 kb on + strandat 796.564 kb on - strandat 796.597 kb on + strand, within LRK54_RS03775at 796.635 kb on - strand, within LRK54_RS03775at 796.692 kb on + strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.696 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.758 kb on + strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.781 kb on + strand, within LRK54_RS03775at 796.782 kb on - strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.815 kb on - strandat 796.815 kb on - strandat 796.815 kb on - strandat 796.821 kb on - strandat 796.821 kb on - strandat 796.858 kb on + strandat 796.859 kb on - strandat 796.904 kb on + strandat 796.938 kb on - strandat 796.941 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium bromide 250 mM
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794,643 - LRK54_RS03755 0.73 +0.3
794,659 + LRK54_RS03755 0.75 -0.5
794,663 + LRK54_RS03755 0.75 -0.2
794,667 + LRK54_RS03755 0.76 -1.3
794,668 - LRK54_RS03755 0.76 -0.6
794,746 + LRK54_RS03755 0.86 -0.6
794,746 + LRK54_RS03755 0.86 -2.3
794,746 + LRK54_RS03755 0.86 -1.3
794,747 - LRK54_RS03755 0.86 -0.1
794,904 + +0.7
794,904 + -0.9
794,905 - -0.6
794,905 - -0.4
794,920 + -0.7
794,938 - +0.6
794,960 + -0.0
794,961 - -0.5
795,045 + LRK54_RS03760 0.28 -1.6
795,045 + LRK54_RS03760 0.28 -0.1
795,045 + LRK54_RS03760 0.28 -0.9
795,046 - LRK54_RS03760 0.28 +0.7
795,046 - LRK54_RS03760 0.28 -0.3
795,063 - LRK54_RS03760 0.32 -0.0
795,076 - LRK54_RS03760 0.35 -0.7
795,081 + LRK54_RS03760 0.36 -1.5
795,082 - LRK54_RS03760 0.36 -1.5
795,117 + LRK54_RS03760 0.44 -0.3
795,161 + LRK54_RS03760 0.54 -0.5
795,162 - LRK54_RS03760 0.54 +0.9
795,194 + LRK54_RS03760 0.61 -3.0
795,195 - LRK54_RS03760 0.61 -1.5
795,195 - LRK54_RS03760 0.61 -1.1
795,196 + LRK54_RS03760 0.62 -1.0
795,253 + LRK54_RS03760 0.74 -1.3
795,253 + LRK54_RS03760 0.74 +0.6
795,254 - LRK54_RS03760 0.74 -1.5
795,254 - LRK54_RS03760 0.74 -0.9
795,265 - LRK54_RS03760 0.77 -1.1
795,265 - LRK54_RS03760 0.77 -0.5
795,294 - LRK54_RS03760 0.83 -1.1
795,345 + -0.8
795,346 - -0.9
795,360 - -0.4
795,410 + -0.9
795,410 + -1.3
795,444 - -0.9
795,476 + -0.9
795,477 - -0.5
795,513 - -0.2
795,513 - +0.2
795,577 - -1.0
795,596 + +0.7
795,609 - -0.7
795,629 + -0.1
795,630 - -0.7
795,630 - -1.0
795,630 - -2.5
795,630 - +0.1
795,630 - +1.1
795,630 - +3.3
795,682 - LRK54_RS03765 0.15 -0.8
795,888 - LRK54_RS03765 0.78 -0.0
795,909 + LRK54_RS03765 0.85 +0.1
795,910 - LRK54_RS03765 0.85 +0.6
795,930 + -1.1
795,931 - +0.7
795,931 - -0.7
795,958 + -1.9
795,959 - -0.9
795,959 - +2.3
796,027 + +0.1
796,082 - LRK54_RS03770 0.12 -0.6
796,082 - LRK54_RS03770 0.12 -1.7
796,142 + LRK54_RS03770 0.25 -0.2
796,173 + LRK54_RS03770 0.32 +0.4
796,173 + LRK54_RS03770 0.32 -0.7
796,191 + LRK54_RS03770 0.36 -1.1
796,191 + LRK54_RS03770 0.36 -0.7
796,191 + LRK54_RS03770 0.36 -1.7
796,191 + LRK54_RS03770 0.36 -1.1
796,191 + LRK54_RS03770 0.36 +0.3
796,191 + LRK54_RS03770 0.36 -0.0
796,191 + LRK54_RS03770 0.36 -1.5
796,191 + LRK54_RS03770 0.36 -2.1
796,191 + LRK54_RS03770 0.36 -0.1
796,192 - LRK54_RS03770 0.36 -2.1
796,192 - LRK54_RS03770 0.36 -1.7
796,192 - LRK54_RS03770 0.36 -0.7
796,192 - LRK54_RS03770 0.36 -0.7
796,192 - LRK54_RS03770 0.36 -1.5
796,192 - LRK54_RS03770 0.36 -0.6
796,192 - LRK54_RS03770 0.36 +0.9
796,192 - LRK54_RS03770 0.36 +0.2
796,192 - LRK54_RS03770 0.36 -0.2
796,192 - LRK54_RS03770 0.36 +2.4
796,192 - LRK54_RS03770 0.36 +0.5
796,200 + LRK54_RS03770 0.38 -2.5
796,200 + LRK54_RS03770 0.38 -0.0
796,201 - LRK54_RS03770 0.38 -0.5
796,201 - LRK54_RS03770 0.38 -0.7
796,201 - LRK54_RS03770 0.38 -1.9
796,201 - LRK54_RS03770 0.38 -1.1
796,245 + LRK54_RS03770 0.48 -1.4
796,245 + LRK54_RS03770 0.48 -1.3
796,245 + LRK54_RS03770 0.48 -0.9
796,245 + LRK54_RS03770 0.48 -0.9
796,245 + LRK54_RS03770 0.48 +0.7
796,245 + LRK54_RS03770 0.48 -1.1
796,245 + LRK54_RS03770 0.48 +0.1
796,245 + LRK54_RS03770 0.48 +0.2
796,245 + LRK54_RS03770 0.48 -1.1
796,245 + LRK54_RS03770 0.48 -1.3
796,245 + LRK54_RS03770 0.48 +0.4
796,245 + LRK54_RS03770 0.48 +0.5
796,246 - LRK54_RS03770 0.48 -0.7
796,246 - LRK54_RS03770 0.48 -0.9
796,246 - LRK54_RS03770 0.48 -0.2
796,246 - LRK54_RS03770 0.48 +0.8
796,246 - LRK54_RS03770 0.48 +0.6
796,247 + LRK54_RS03770 0.48 -0.3
796,247 + LRK54_RS03770 0.48 -1.0
796,317 + LRK54_RS03770 0.64 -1.1
796,317 + LRK54_RS03770 0.64 +0.1
796,317 + LRK54_RS03770 0.64 +0.4
796,318 - LRK54_RS03770 0.64 -1.6
796,318 - LRK54_RS03770 0.64 -0.6
796,318 - LRK54_RS03770 0.64 +0.3
796,318 - LRK54_RS03770 0.64 +0.1
796,368 + LRK54_RS03770 0.75 -2.3
796,368 + LRK54_RS03770 0.75 -0.9
796,369 - LRK54_RS03770 0.75 +0.1
796,369 - LRK54_RS03770 0.75 -0.7
796,369 - LRK54_RS03770 0.75 -0.4
796,377 + LRK54_RS03770 0.77 -0.7
796,378 - LRK54_RS03770 0.77 -1.7
796,405 + LRK54_RS03770 0.83 -1.0
796,405 + LRK54_RS03770 0.83 +0.5
796,406 - LRK54_RS03770 0.83 -1.3
796,406 - LRK54_RS03770 0.83 -1.1
796,465 + -0.7
796,465 + +0.1
796,466 - -0.1
796,466 - +1.1
796,481 + +0.8
796,482 - +0.2
796,501 - -0.4
796,563 + +0.1
796,564 - +0.0
796,597 + LRK54_RS03775 0.12 -0.7
796,635 - LRK54_RS03775 0.26 +1.1
796,692 + LRK54_RS03775 0.46 -1.3
796,693 - LRK54_RS03775 0.46 +1.3
796,693 - LRK54_RS03775 0.46 -0.4
796,693 - LRK54_RS03775 0.46 -1.3
796,696 + LRK54_RS03775 0.48 -3.0
796,754 + LRK54_RS03775 0.68 +0.7
796,754 + LRK54_RS03775 0.68 +0.2
796,758 + LRK54_RS03775 0.70 +1.7
796,759 - LRK54_RS03775 0.70 -1.5
796,759 - LRK54_RS03775 0.70 -0.3
796,781 + LRK54_RS03775 0.78 -3.1
796,782 - LRK54_RS03775 0.78 -0.1
796,814 + LRK54_RS03775 0.89 +0.1
796,814 + LRK54_RS03775 0.89 -0.9
796,814 + LRK54_RS03775 0.89 -1.5
796,815 - -2.9
796,815 - -1.4
796,815 - +1.7
796,821 - +0.8
796,821 - -0.7
796,858 + -1.3
796,859 - -1.7
796,904 + -0.1
796,938 - -0.0
796,941 + -1.9
796,949 + -0.7
796,949 + -2.3
796,949 + -0.8

Or see this region's nucleotide sequence