Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0605

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0604 and Ga0059261_0605 overlap by 4 nucleotidesGa0059261_0605 and Ga0059261_0606 overlap by 4 nucleotidesGa0059261_0606 and Ga0059261_0607 overlap by 4 nucleotides Ga0059261_0604: Ga0059261_0604 - Nucleoside-diphosphate-sugar epimerases, at 638,066 to 639,079 _0604 Ga0059261_0605: Ga0059261_0605 - hypothetical protein, at 639,076 to 640,368 _0605 Ga0059261_0606: Ga0059261_0606 - Glycosyltransferases involved in cell wall biogenesis, at 640,365 to 641,294 _0606 Ga0059261_0607: Ga0059261_0607 - hypothetical protein, at 641,291 to 642,391 _0607 Position (kb) 639 640 641Strain fitness (log2 ratio) -1 0 1at 638.173 kb on - strand, within Ga0059261_0604at 638.293 kb on + strand, within Ga0059261_0604at 638.293 kb on + strand, within Ga0059261_0604at 638.293 kb on + strandat 638.294 kb on - strand, within Ga0059261_0604at 638.294 kb on - strand, within Ga0059261_0604at 638.295 kb on + strand, within Ga0059261_0604at 638.295 kb on + strand, within Ga0059261_0604at 638.295 kb on + strand, within Ga0059261_0604at 638.296 kb on - strandat 638.311 kb on + strand, within Ga0059261_0604at 638.312 kb on - strand, within Ga0059261_0604at 638.358 kb on + strand, within Ga0059261_0604at 638.358 kb on + strand, within Ga0059261_0604at 638.359 kb on - strand, within Ga0059261_0604at 638.364 kb on + strand, within Ga0059261_0604at 638.364 kb on + strand, within Ga0059261_0604at 638.364 kb on + strand, within Ga0059261_0604at 638.364 kb on + strandat 638.364 kb on + strand, within Ga0059261_0604at 638.365 kb on - strand, within Ga0059261_0604at 638.365 kb on - strand, within Ga0059261_0604at 638.365 kb on - strand, within Ga0059261_0604at 638.365 kb on - strand, within Ga0059261_0604at 638.365 kb on - strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.526 kb on + strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.527 kb on - strand, within Ga0059261_0604at 638.568 kb on + strand, within Ga0059261_0604at 638.568 kb on + strand, within Ga0059261_0604at 638.649 kb on + strand, within Ga0059261_0604at 638.649 kb on + strand, within Ga0059261_0604at 638.650 kb on - strand, within Ga0059261_0604at 638.671 kb on - strand, within Ga0059261_0604at 638.671 kb on - strand, within Ga0059261_0604at 639.305 kb on + strand, within Ga0059261_0605at 639.305 kb on + strand, within Ga0059261_0605at 639.305 kb on + strand, within Ga0059261_0605at 639.305 kb on + strand, within Ga0059261_0605at 639.305 kb on + strand, within Ga0059261_0605at 639.306 kb on - strand, within Ga0059261_0605at 639.306 kb on - strand, within Ga0059261_0605at 639.306 kb on - strand, within Ga0059261_0605at 639.306 kb on - strand, within Ga0059261_0605at 639.306 kb on - strand, within Ga0059261_0605at 639.386 kb on + strand, within Ga0059261_0605at 639.387 kb on - strand, within Ga0059261_0605at 639.413 kb on + strand, within Ga0059261_0605at 639.414 kb on - strand, within Ga0059261_0605at 639.414 kb on - strand, within Ga0059261_0605at 639.614 kb on + strand, within Ga0059261_0605at 639.614 kb on + strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.747 kb on + strand, within Ga0059261_0605at 639.818 kb on + strand, within Ga0059261_0605at 639.818 kb on + strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strandat 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.055 kb on + strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.112 kb on + strand, within Ga0059261_0605at 640.113 kb on - strand, within Ga0059261_0605at 640.113 kb on - strand, within Ga0059261_0605at 640.163 kb on + strand, within Ga0059261_0605at 640.163 kb on + strand, within Ga0059261_0605at 640.164 kb on - strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strandat 640.209 kb on - strand, within Ga0059261_0605at 640.209 kb on - strand, within Ga0059261_0605at 640.271 kb on + strandat 640.272 kb on - strandat 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.051 kb on - strand, within Ga0059261_0606at 641.051 kb on - strand, within Ga0059261_0606at 641.073 kb on + strand, within Ga0059261_0606at 641.074 kb on + strand, within Ga0059261_0606at 641.074 kb on + strand, within Ga0059261_0606at 641.075 kb on - strand, within Ga0059261_0606at 641.075 kb on - strand, within Ga0059261_0606at 641.337 kb on + strandat 641.337 kb on + strandat 641.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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638,173 - Ga0059261_0604 0.11 -0.0
638,293 + Ga0059261_0604 0.22 -0.1
638,293 + Ga0059261_0604 0.22 +0.1
638,293 + +1.6
638,294 - Ga0059261_0604 0.22 -0.5
638,294 - Ga0059261_0604 0.22 -0.6
638,295 + Ga0059261_0604 0.23 -0.1
638,295 + Ga0059261_0604 0.23 -0.2
638,295 + Ga0059261_0604 0.23 +1.1
638,296 - +1.2
638,311 + Ga0059261_0604 0.24 -0.1
638,312 - Ga0059261_0604 0.24 -0.4
638,358 + Ga0059261_0604 0.29 -0.9
638,358 + Ga0059261_0604 0.29 -0.4
638,359 - Ga0059261_0604 0.29 +0.4
638,364 + Ga0059261_0604 0.29 -0.1
638,364 + Ga0059261_0604 0.29 +0.6
638,364 + Ga0059261_0604 0.29 -1.5
638,364 + -1.1
638,364 + Ga0059261_0604 0.29 -0.3
638,365 - Ga0059261_0604 0.29 +0.1
638,365 - Ga0059261_0604 0.29 -0.2
638,365 - Ga0059261_0604 0.29 +0.3
638,365 - Ga0059261_0604 0.29 -0.1
638,365 - Ga0059261_0604 0.29 -0.1
638,526 + Ga0059261_0604 0.45 -0.2
638,526 + Ga0059261_0604 0.45 +0.0
638,526 + Ga0059261_0604 0.45 +0.1
638,526 + Ga0059261_0604 0.45 -0.8
638,526 + Ga0059261_0604 0.45 +0.2
638,526 + Ga0059261_0604 0.45 -0.1
638,527 - Ga0059261_0604 0.45 -0.7
638,527 - Ga0059261_0604 0.45 -0.3
638,527 - Ga0059261_0604 0.45 +0.3
638,527 - Ga0059261_0604 0.45 +1.0
638,527 - Ga0059261_0604 0.45 +0.5
638,527 - Ga0059261_0604 0.45 +0.0
638,527 - Ga0059261_0604 0.45 +0.3
638,568 + Ga0059261_0604 0.50 -0.2
638,568 + Ga0059261_0604 0.50 -0.6
638,649 + Ga0059261_0604 0.57 +0.2
638,649 + Ga0059261_0604 0.57 +0.1
638,650 - Ga0059261_0604 0.58 -0.3
638,671 - Ga0059261_0604 0.60 -0.1
638,671 - Ga0059261_0604 0.60 -1.4
639,305 + Ga0059261_0605 0.18 -0.6
639,305 + Ga0059261_0605 0.18 -1.1
639,305 + Ga0059261_0605 0.18 -0.1
639,305 + Ga0059261_0605 0.18 +0.4
639,305 + Ga0059261_0605 0.18 +1.0
639,306 - Ga0059261_0605 0.18 -0.4
639,306 - Ga0059261_0605 0.18 -0.1
639,306 - Ga0059261_0605 0.18 -0.1
639,306 - Ga0059261_0605 0.18 +0.4
639,306 - Ga0059261_0605 0.18 -0.2
639,386 + Ga0059261_0605 0.24 +1.2
639,387 - Ga0059261_0605 0.24 -0.5
639,413 + Ga0059261_0605 0.26 +0.1
639,414 - Ga0059261_0605 0.26 +0.5
639,414 - Ga0059261_0605 0.26 +0.9
639,614 + Ga0059261_0605 0.42 +0.0
639,614 + Ga0059261_0605 0.42 +0.8
639,615 - Ga0059261_0605 0.42 -0.0
639,615 - Ga0059261_0605 0.42 -0.3
639,615 - Ga0059261_0605 0.42 +0.5
639,615 - Ga0059261_0605 0.42 +0.1
639,626 + Ga0059261_0605 0.43 +0.2
639,626 + Ga0059261_0605 0.43 +1.0
639,626 + Ga0059261_0605 0.43 +0.8
639,626 + Ga0059261_0605 0.43 -0.5
639,626 + Ga0059261_0605 0.43 -1.4
639,627 - Ga0059261_0605 0.43 +1.7
639,627 - Ga0059261_0605 0.43 +0.1
639,627 - Ga0059261_0605 0.43 -0.6
639,627 - Ga0059261_0605 0.43 +0.3
639,734 + Ga0059261_0605 0.51 +0.3
639,734 + Ga0059261_0605 0.51 +0.0
639,734 + Ga0059261_0605 0.51 +0.1
639,747 + Ga0059261_0605 0.52 -0.1
639,818 + Ga0059261_0605 0.57 -0.5
639,818 + Ga0059261_0605 0.57 -1.4
639,819 - Ga0059261_0605 0.57 -0.0
639,819 - Ga0059261_0605 0.57 +0.6
639,819 - Ga0059261_0605 0.57 +1.6
640,046 + Ga0059261_0605 0.75 -0.0
640,046 + Ga0059261_0605 0.75 -0.5
640,046 + +0.0
640,046 + Ga0059261_0605 0.75 +0.2
640,046 + Ga0059261_0605 0.75 +0.2
640,046 + Ga0059261_0605 0.75 +0.8
640,047 - Ga0059261_0605 0.75 +1.0
640,047 - Ga0059261_0605 0.75 -0.5
640,047 - Ga0059261_0605 0.75 -0.1
640,047 - Ga0059261_0605 0.75 +0.3
640,047 - Ga0059261_0605 0.75 -0.7
640,047 - Ga0059261_0605 0.75 +0.6
640,047 - Ga0059261_0605 0.75 +1.3
640,055 + Ga0059261_0605 0.76 -0.2
640,056 - Ga0059261_0605 0.76 -0.4
640,056 - Ga0059261_0605 0.76 +0.0
640,056 - Ga0059261_0605 0.76 +0.2
640,056 - Ga0059261_0605 0.76 -0.0
640,112 + Ga0059261_0605 0.80 +0.9
640,113 - Ga0059261_0605 0.80 +0.5
640,113 - Ga0059261_0605 0.80 +0.4
640,163 + Ga0059261_0605 0.84 +0.4
640,163 + Ga0059261_0605 0.84 +0.2
640,164 - Ga0059261_0605 0.84 +0.4
640,208 + Ga0059261_0605 0.88 -0.1
640,208 + Ga0059261_0605 0.88 +0.6
640,208 + Ga0059261_0605 0.88 -0.2
640,208 + +0.8
640,209 - Ga0059261_0605 0.88 +0.1
640,209 - Ga0059261_0605 0.88 +0.5
640,271 + +0.5
640,272 - +0.3
641,041 + Ga0059261_0606 0.73 +0.0
641,041 + Ga0059261_0606 0.73 +0.2
641,041 + Ga0059261_0606 0.73 -0.0
641,041 + Ga0059261_0606 0.73 +0.2
641,041 + Ga0059261_0606 0.73 -0.2
641,042 - Ga0059261_0606 0.73 +0.1
641,042 - Ga0059261_0606 0.73 +0.3
641,042 - Ga0059261_0606 0.73 -0.2
641,042 - Ga0059261_0606 0.73 +0.1
641,042 - Ga0059261_0606 0.73 +0.0
641,042 - Ga0059261_0606 0.73 -1.0
641,050 + Ga0059261_0606 0.74 -0.4
641,050 + Ga0059261_0606 0.74 -1.4
641,050 + Ga0059261_0606 0.74 +0.5
641,051 - Ga0059261_0606 0.74 -0.1
641,051 - Ga0059261_0606 0.74 +0.6
641,073 + Ga0059261_0606 0.76 -0.0
641,074 + Ga0059261_0606 0.76 +0.1
641,074 + Ga0059261_0606 0.76 -0.7
641,075 - Ga0059261_0606 0.76 +0.1
641,075 - Ga0059261_0606 0.76 -0.9
641,337 + -0.1
641,337 + -0.9
641,338 - +0.4

Or see this region's nucleotide sequence