Experiment: syringaldehyde 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26905 and AO356_26910 are separated by 39 nucleotides AO356_26910 and AO356_26915 overlap by 4 nucleotides AO356_26915 and AO356_26920 are separated by 227 nucleotides
AO356_26905: AO356_26905 - AraC family transcriptional regulator, at 6,126,483 to 6,127,391
_26905
AO356_26910: AO356_26910 - hypothetical protein, at 6,127,431 to 6,127,637
_26910
AO356_26915: AO356_26915 - Fe-S oxidoreductase, at 6,127,634 to 6,128,380
_26915
AO356_26920: AO356_26920 - alpha/beta hydrolase, at 6,128,608 to 6,129,675
_26920
Position (kb)
6127
6128
6129 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6126.655 kb on + strand, within AO356_26905 at 6126.931 kb on - strand, within AO356_26905 at 6126.975 kb on + strand, within AO356_26905 at 6126.975 kb on + strand, within AO356_26905 at 6127.162 kb on + strand, within AO356_26905 at 6127.163 kb on - strand, within AO356_26905 at 6127.163 kb on - strand, within AO356_26905 at 6127.163 kb on - strand, within AO356_26905 at 6127.231 kb on + strand, within AO356_26905 at 6127.232 kb on - strand, within AO356_26905 at 6127.245 kb on - strand, within AO356_26905 at 6127.473 kb on - strand, within AO356_26910 at 6127.483 kb on + strand, within AO356_26910 at 6127.579 kb on - strand, within AO356_26910 at 6127.635 kb on + strand at 6127.635 kb on + strand at 6127.636 kb on - strand at 6127.651 kb on + strand at 6127.654 kb on - strand at 6128.024 kb on - strand, within AO356_26915 at 6128.079 kb on + strand, within AO356_26915 at 6128.079 kb on + strand, within AO356_26915 at 6128.380 kb on + strand at 6128.436 kb on + strand at 6128.436 kb on + strand at 6128.469 kb on + strand at 6128.470 kb on - strand at 6128.470 kb on - strand at 6128.512 kb on + strand at 6128.512 kb on + strand at 6128.513 kb on - strand at 6128.708 kb on + strand at 6128.708 kb on + strand at 6128.708 kb on + strand at 6128.708 kb on + strand at 6128.709 kb on - strand at 6128.709 kb on - strand at 6128.709 kb on - strand at 6128.733 kb on - strand, within AO356_26920 at 6128.838 kb on - strand, within AO356_26920 at 6128.877 kb on - strand, within AO356_26920 at 6129.045 kb on - strand, within AO356_26920 at 6129.120 kb on - strand, within AO356_26920
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 10 mM remove 6,126,655 + AO356_26905 0.19 +0.8 6,126,931 - AO356_26905 0.49 -0.7 6,126,975 + AO356_26905 0.54 -0.2 6,126,975 + AO356_26905 0.54 +2.1 6,127,162 + AO356_26905 0.75 -0.2 6,127,163 - AO356_26905 0.75 +1.1 6,127,163 - AO356_26905 0.75 +2.1 6,127,163 - AO356_26905 0.75 +0.6 6,127,231 + AO356_26905 0.82 -0.1 6,127,232 - AO356_26905 0.82 -0.7 6,127,245 - AO356_26905 0.84 -1.0 6,127,473 - AO356_26910 0.20 -0.5 6,127,483 + AO356_26910 0.25 -0.0 6,127,579 - AO356_26910 0.71 +0.6 6,127,635 + -0.6 6,127,635 + -0.1 6,127,636 - +0.1 6,127,651 + -0.2 6,127,654 - -0.4 6,128,024 - AO356_26915 0.52 -0.5 6,128,079 + AO356_26915 0.60 +0.7 6,128,079 + AO356_26915 0.60 -1.8 6,128,380 + -0.4 6,128,436 + +0.1 6,128,436 + +0.8 6,128,469 + -0.3 6,128,470 - +0.1 6,128,470 - +0.1 6,128,512 + -0.4 6,128,512 + +0.5 6,128,513 - +0.2 6,128,708 + +1.1 6,128,708 + -0.0 6,128,708 + -0.8 6,128,708 + +0.2 6,128,709 - +0.0 6,128,709 - -0.5 6,128,709 - +0.2 6,128,733 - AO356_26920 0.12 +0.7 6,128,838 - AO356_26920 0.22 -0.4 6,128,877 - AO356_26920 0.25 +0.4 6,129,045 - AO356_26920 0.41 +0.0 6,129,120 - AO356_26920 0.48 +0.1
Or see this region's nucleotide sequence