Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26915

Experiment: syringaldehyde 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26905 and AO356_26910 are separated by 39 nucleotidesAO356_26910 and AO356_26915 overlap by 4 nucleotidesAO356_26915 and AO356_26920 are separated by 227 nucleotides AO356_26905: AO356_26905 - AraC family transcriptional regulator, at 6,126,483 to 6,127,391 _26905 AO356_26910: AO356_26910 - hypothetical protein, at 6,127,431 to 6,127,637 _26910 AO356_26915: AO356_26915 - Fe-S oxidoreductase, at 6,127,634 to 6,128,380 _26915 AO356_26920: AO356_26920 - alpha/beta hydrolase, at 6,128,608 to 6,129,675 _26920 Position (kb) 6127 6128 6129Strain fitness (log2 ratio) -2 -1 0 1 2at 6126.655 kb on + strand, within AO356_26905at 6126.931 kb on - strand, within AO356_26905at 6126.975 kb on + strand, within AO356_26905at 6126.975 kb on + strand, within AO356_26905at 6127.162 kb on + strand, within AO356_26905at 6127.163 kb on - strand, within AO356_26905at 6127.163 kb on - strand, within AO356_26905at 6127.163 kb on - strand, within AO356_26905at 6127.231 kb on + strand, within AO356_26905at 6127.232 kb on - strand, within AO356_26905at 6127.245 kb on - strand, within AO356_26905at 6127.473 kb on - strand, within AO356_26910at 6127.483 kb on + strand, within AO356_26910at 6127.579 kb on - strand, within AO356_26910at 6127.635 kb on + strandat 6127.635 kb on + strandat 6127.636 kb on - strandat 6127.651 kb on + strandat 6127.654 kb on - strandat 6128.024 kb on - strand, within AO356_26915at 6128.079 kb on + strand, within AO356_26915at 6128.079 kb on + strand, within AO356_26915at 6128.380 kb on + strandat 6128.436 kb on + strandat 6128.436 kb on + strandat 6128.469 kb on + strandat 6128.470 kb on - strandat 6128.470 kb on - strandat 6128.512 kb on + strandat 6128.512 kb on + strandat 6128.513 kb on - strandat 6128.708 kb on + strandat 6128.708 kb on + strandat 6128.708 kb on + strandat 6128.708 kb on + strandat 6128.709 kb on - strandat 6128.709 kb on - strandat 6128.709 kb on - strandat 6128.733 kb on - strand, within AO356_26920at 6128.838 kb on - strand, within AO356_26920at 6128.877 kb on - strand, within AO356_26920at 6129.045 kb on - strand, within AO356_26920at 6129.120 kb on - strand, within AO356_26920

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 10 mM
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6,126,655 + AO356_26905 0.19 +0.8
6,126,931 - AO356_26905 0.49 -0.7
6,126,975 + AO356_26905 0.54 -0.2
6,126,975 + AO356_26905 0.54 +2.1
6,127,162 + AO356_26905 0.75 -0.2
6,127,163 - AO356_26905 0.75 +1.1
6,127,163 - AO356_26905 0.75 +2.1
6,127,163 - AO356_26905 0.75 +0.6
6,127,231 + AO356_26905 0.82 -0.1
6,127,232 - AO356_26905 0.82 -0.7
6,127,245 - AO356_26905 0.84 -1.0
6,127,473 - AO356_26910 0.20 -0.5
6,127,483 + AO356_26910 0.25 -0.0
6,127,579 - AO356_26910 0.71 +0.6
6,127,635 + -0.6
6,127,635 + -0.1
6,127,636 - +0.1
6,127,651 + -0.2
6,127,654 - -0.4
6,128,024 - AO356_26915 0.52 -0.5
6,128,079 + AO356_26915 0.60 +0.7
6,128,079 + AO356_26915 0.60 -1.8
6,128,380 + -0.4
6,128,436 + +0.1
6,128,436 + +0.8
6,128,469 + -0.3
6,128,470 - +0.1
6,128,470 - +0.1
6,128,512 + -0.4
6,128,512 + +0.5
6,128,513 - +0.2
6,128,708 + +1.1
6,128,708 + -0.0
6,128,708 + -0.8
6,128,708 + +0.2
6,128,709 - +0.0
6,128,709 - -0.5
6,128,709 - +0.2
6,128,733 - AO356_26920 0.12 +0.7
6,128,838 - AO356_26920 0.22 -0.4
6,128,877 - AO356_26920 0.25 +0.4
6,129,045 - AO356_26920 0.41 +0.0
6,129,120 - AO356_26920 0.48 +0.1

Or see this region's nucleotide sequence