Experiment: syringaldehyde 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21905 and AO356_21910 are separated by 35 nucleotides AO356_21910 and AO356_21915 are separated by 36 nucleotides
AO356_21905: AO356_21905 - monooxygenase, at 4,901,091 to 4,902,419
_21905
AO356_21910: AO356_21910 - phosphate ABC transporter substrate-binding protein, at 4,902,455 to 4,903,237
_21910
AO356_21915: AO356_21915 - chemotaxis protein, at 4,903,274 to 4,905,217
_21915
Position (kb)
4902
4903
4904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4901.475 kb on - strand, within AO356_21905 at 4901.841 kb on + strand, within AO356_21905 at 4901.841 kb on + strand, within AO356_21905 at 4901.842 kb on - strand, within AO356_21905 at 4902.015 kb on + strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.124 kb on - strand, within AO356_21905 at 4902.152 kb on - strand, within AO356_21905 at 4902.180 kb on - strand, within AO356_21905 at 4902.209 kb on + strand, within AO356_21905 at 4902.210 kb on - strand, within AO356_21905 at 4902.234 kb on + strand, within AO356_21905 at 4902.234 kb on + strand, within AO356_21905 at 4902.235 kb on - strand, within AO356_21905 at 4902.235 kb on - strand, within AO356_21905 at 4902.258 kb on + strand, within AO356_21905 at 4902.258 kb on + strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.354 kb on + strand at 4902.354 kb on + strand at 4902.454 kb on + strand at 4902.468 kb on + strand at 4902.469 kb on - strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.498 kb on + strand at 4902.498 kb on + strand at 4902.666 kb on + strand, within AO356_21910 at 4902.680 kb on + strand, within AO356_21910 at 4902.680 kb on + strand, within AO356_21910 at 4902.681 kb on - strand, within AO356_21910 at 4902.681 kb on - strand, within AO356_21910 at 4902.694 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.731 kb on - strand, within AO356_21910 at 4902.731 kb on - strand, within AO356_21910 at 4902.937 kb on + strand, within AO356_21910 at 4902.937 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.959 kb on + strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.038 kb on - strand, within AO356_21910 at 4903.038 kb on - strand, within AO356_21910 at 4903.173 kb on - strand at 4903.173 kb on - strand at 4903.173 kb on - strand at 4903.190 kb on + strand at 4903.191 kb on - strand at 4903.191 kb on - strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.228 kb on - strand at 4903.228 kb on - strand at 4903.276 kb on - strand at 4903.276 kb on - strand at 4903.276 kb on - strand at 4903.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 10 mM remove 4,901,475 - AO356_21905 0.29 +1.0 4,901,841 + AO356_21905 0.56 -0.8 4,901,841 + AO356_21905 0.56 -0.6 4,901,842 - AO356_21905 0.57 +0.2 4,902,015 + AO356_21905 0.70 -0.7 4,902,016 - AO356_21905 0.70 +0.5 4,902,016 - AO356_21905 0.70 +0.1 4,902,016 - AO356_21905 0.70 +0.7 4,902,124 - AO356_21905 0.78 +0.7 4,902,152 - AO356_21905 0.80 -0.1 4,902,180 - AO356_21905 0.82 -1.3 4,902,209 + AO356_21905 0.84 -0.1 4,902,210 - AO356_21905 0.84 -0.9 4,902,234 + AO356_21905 0.86 -0.5 4,902,234 + AO356_21905 0.86 +0.1 4,902,235 - AO356_21905 0.86 +0.3 4,902,235 - AO356_21905 0.86 -0.1 4,902,258 + AO356_21905 0.88 +0.2 4,902,258 + AO356_21905 0.88 -0.2 4,902,259 - AO356_21905 0.88 +0.3 4,902,259 - AO356_21905 0.88 +0.0 4,902,259 - AO356_21905 0.88 +0.5 4,902,354 + +0.7 4,902,354 + -0.8 4,902,454 + -0.1 4,902,468 + -0.4 4,902,469 - +0.8 4,902,476 + -0.1 4,902,476 + +0.3 4,902,476 + -0.4 4,902,476 + +0.4 4,902,498 + -0.0 4,902,498 + -0.8 4,902,666 + AO356_21910 0.27 +0.7 4,902,680 + AO356_21910 0.29 -0.4 4,902,680 + AO356_21910 0.29 -1.0 4,902,681 - AO356_21910 0.29 -0.5 4,902,681 - AO356_21910 0.29 -0.7 4,902,694 + AO356_21910 0.31 +0.1 4,902,730 + AO356_21910 0.35 +0.3 4,902,730 + AO356_21910 0.35 +0.7 4,902,730 + AO356_21910 0.35 +0.4 4,902,731 - AO356_21910 0.35 +0.0 4,902,731 - AO356_21910 0.35 -0.3 4,902,937 + AO356_21910 0.62 +0.5 4,902,937 + AO356_21910 0.62 -0.1 4,902,953 + AO356_21910 0.64 -2.5 4,902,953 + AO356_21910 0.64 +0.6 4,902,953 + AO356_21910 0.64 -0.1 4,902,953 + AO356_21910 0.64 -0.8 4,902,953 + AO356_21910 0.64 +0.3 4,902,953 + AO356_21910 0.64 -0.3 4,902,953 + AO356_21910 0.64 -0.4 4,902,953 + AO356_21910 0.64 -1.3 4,902,954 - AO356_21910 0.64 -0.4 4,902,954 - AO356_21910 0.64 -0.1 4,902,954 - AO356_21910 0.64 +1.0 4,902,959 + AO356_21910 0.64 -0.6 4,902,960 - AO356_21910 0.64 -0.4 4,902,960 - AO356_21910 0.64 +0.8 4,902,960 - AO356_21910 0.64 +0.0 4,903,037 + AO356_21910 0.74 -0.2 4,903,037 + AO356_21910 0.74 +0.2 4,903,037 + AO356_21910 0.74 -0.2 4,903,037 + AO356_21910 0.74 -0.1 4,903,037 + AO356_21910 0.74 +0.2 4,903,037 + AO356_21910 0.74 -0.4 4,903,038 - AO356_21910 0.74 +0.6 4,903,038 - AO356_21910 0.74 +0.7 4,903,173 - +0.3 4,903,173 - -0.4 4,903,173 - -0.8 4,903,190 + -0.0 4,903,191 - -0.3 4,903,191 - +0.7 4,903,227 + +0.3 4,903,227 + +0.5 4,903,227 + +1.9 4,903,227 + +0.7 4,903,227 + -0.2 4,903,228 - +1.0 4,903,228 - -0.3 4,903,276 - +0.3 4,903,276 - +0.8 4,903,276 - -0.9 4,903,319 - +0.8
Or see this region's nucleotide sequence