Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08095

Experiment: syringaldehyde 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08090 and AO356_08095 are separated by 101 nucleotidesAO356_08095 and AO356_08100 overlap by 4 nucleotidesAO356_08100 and AO356_08105 are separated by 268 nucleotides AO356_08090: AO356_08090 - acetyl-CoA acetyltransferase, at 1,812,032 to 1,813,309 _08090 AO356_08095: AO356_08095 - transposase, at 1,813,411 to 1,814,247 _08095 AO356_08100: AO356_08100 - transposase, at 1,814,244 to 1,814,546 _08100 AO356_08105: AO356_08105 - 3-ketoacyl-ACP reductase, at 1,814,815 to 1,816,167 _08105 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -1 0 1 2at 1812.450 kb on + strand, within AO356_08090at 1812.451 kb on - strand, within AO356_08090at 1812.451 kb on - strand, within AO356_08090at 1812.811 kb on + strand, within AO356_08090at 1812.811 kb on + strand, within AO356_08090at 1812.857 kb on + strand, within AO356_08090at 1812.858 kb on - strand, within AO356_08090at 1812.858 kb on - strand, within AO356_08090at 1812.858 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.050 kb on - strand, within AO356_08090at 1813.056 kb on + strand, within AO356_08090at 1813.056 kb on + strand, within AO356_08090at 1813.056 kb on + strand, within AO356_08090at 1813.056 kb on + strand, within AO356_08090at 1813.057 kb on - strand, within AO356_08090at 1813.057 kb on - strand, within AO356_08090at 1813.057 kb on - strand, within AO356_08090at 1813.057 kb on - strand, within AO356_08090at 1813.057 kb on - strand, within AO356_08090at 1813.114 kb on + strand, within AO356_08090at 1813.114 kb on + strand, within AO356_08090at 1813.179 kb on + strand, within AO356_08090at 1813.179 kb on + strand, within AO356_08090at 1813.180 kb on - strand, within AO356_08090at 1813.180 kb on - strand, within AO356_08090at 1813.180 kb on - strand, within AO356_08090at 1813.240 kb on - strandat 1813.240 kb on - strandat 1813.240 kb on - strandat 1813.240 kb on - strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.299 kb on - strandat 1813.324 kb on + strandat 1813.324 kb on + strandat 1813.324 kb on + strandat 1813.324 kb on + strandat 1813.324 kb on + strandat 1813.325 kb on - strandat 1813.325 kb on - strandat 1813.325 kb on - strandat 1813.338 kb on + strandat 1813.338 kb on + strandat 1813.405 kb on - strandat 1814.607 kb on + strandat 1814.654 kb on + strandat 1814.655 kb on - strandat 1814.736 kb on + strandat 1814.736 kb on + strandat 1814.737 kb on - strandat 1814.737 kb on - strandat 1814.737 kb on - strandat 1814.743 kb on + strandat 1814.743 kb on + strandat 1814.743 kb on + strandat 1814.827 kb on + strandat 1814.827 kb on + strandat 1814.827 kb on + strandat 1814.829 kb on + strandat 1814.830 kb on - strandat 1814.830 kb on - strandat 1814.830 kb on - strandat 1815.019 kb on + strand, within AO356_08105at 1815.020 kb on - strand, within AO356_08105at 1815.020 kb on - strand, within AO356_08105at 1815.020 kb on - strand, within AO356_08105

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 10 mM
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1,812,450 + AO356_08090 0.33 -0.2
1,812,451 - AO356_08090 0.33 +0.8
1,812,451 - AO356_08090 0.33 +0.3
1,812,811 + AO356_08090 0.61 -0.1
1,812,811 + AO356_08090 0.61 +1.0
1,812,857 + AO356_08090 0.65 +1.0
1,812,858 - AO356_08090 0.65 +0.4
1,812,858 - AO356_08090 0.65 +0.2
1,812,858 - AO356_08090 0.65 -0.1
1,813,050 - AO356_08090 0.80 +0.3
1,813,050 - AO356_08090 0.80 +0.8
1,813,050 - AO356_08090 0.80 +0.8
1,813,050 - AO356_08090 0.80 -0.2
1,813,050 - AO356_08090 0.80 +0.1
1,813,050 - AO356_08090 0.80 -0.6
1,813,056 + AO356_08090 0.80 -0.2
1,813,056 + AO356_08090 0.80 -0.7
1,813,056 + AO356_08090 0.80 -0.7
1,813,056 + AO356_08090 0.80 -0.6
1,813,057 - AO356_08090 0.80 +0.0
1,813,057 - AO356_08090 0.80 +1.4
1,813,057 - AO356_08090 0.80 -0.1
1,813,057 - AO356_08090 0.80 +0.2
1,813,057 - AO356_08090 0.80 +0.4
1,813,114 + AO356_08090 0.85 -0.1
1,813,114 + AO356_08090 0.85 +0.3
1,813,179 + AO356_08090 0.90 +0.2
1,813,179 + AO356_08090 0.90 +0.4
1,813,180 - AO356_08090 0.90 +0.6
1,813,180 - AO356_08090 0.90 -0.5
1,813,180 - AO356_08090 0.90 +0.9
1,813,240 - -0.5
1,813,240 - -0.5
1,813,240 - +0.5
1,813,240 - -0.2
1,813,298 + -0.5
1,813,298 + +1.8
1,813,298 + -0.6
1,813,298 + +0.2
1,813,298 + +1.3
1,813,298 + -0.1
1,813,298 + -0.3
1,813,299 - -0.2
1,813,324 + +0.0
1,813,324 + -0.4
1,813,324 + +0.0
1,813,324 + -0.6
1,813,324 + +0.6
1,813,325 - +0.3
1,813,325 - +0.6
1,813,325 - +0.4
1,813,338 + +0.6
1,813,338 + -0.6
1,813,405 - +0.1
1,814,607 + +0.8
1,814,654 + -0.4
1,814,655 - +0.5
1,814,736 + -0.4
1,814,736 + +0.4
1,814,737 - -0.3
1,814,737 - -0.4
1,814,737 - +0.3
1,814,743 + -0.4
1,814,743 + -0.8
1,814,743 + -0.4
1,814,827 + +0.3
1,814,827 + +0.5
1,814,827 + +0.2
1,814,829 + +0.5
1,814,830 - +0.3
1,814,830 - -1.7
1,814,830 - -0.5
1,815,019 + AO356_08105 0.15 +0.2
1,815,020 - AO356_08105 0.15 +0.2
1,815,020 - AO356_08105 0.15 +0.5
1,815,020 - AO356_08105 0.15 +0.5

Or see this region's nucleotide sequence