Experiment: syringaldehyde 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02190 and AO356_02195 are separated by 201 nucleotides AO356_02195 and AO356_02200 are separated by 109 nucleotides AO356_02200 and AO356_02205 are separated by 184 nucleotides
AO356_02190: AO356_02190 - hypothetical protein, at 471,421 to 472,110
_02190
AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932
_02195
AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305
_02200
AO356_02205: AO356_02205 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 473,490 to 474,320
_02205
Position (kb) 473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 472.090 kb on + strand at 472.090 kb on + strand at 472.161 kb on - strand at 472.161 kb on - strand at 472.169 kb on + strand at 472.170 kb on - strand at 472.172 kb on + strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.221 kb on - strand at 472.283 kb on - strand at 472.294 kb on + strand at 472.294 kb on + strand at 472.361 kb on + strand at 472.491 kb on + strand, within AO356_02195 at 472.595 kb on - strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.719 kb on - strand, within AO356_02195 at 472.915 kb on - strand at 472.915 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.970 kb on + strand at 472.970 kb on + strand at 473.021 kb on - strand at 473.027 kb on - strand at 473.035 kb on + strand at 473.331 kb on + strand at 473.331 kb on + strand at 473.331 kb on + strand at 473.331 kb on + strand at 473.332 kb on - strand at 473.332 kb on - strand at 473.332 kb on - strand at 473.335 kb on + strand at 473.336 kb on - strand at 473.336 kb on - strand at 473.336 kb on - strand at 473.336 kb on - strand at 473.348 kb on + strand at 473.349 kb on - strand at 473.407 kb on + strand at 473.407 kb on + strand at 473.408 kb on - strand at 473.408 kb on - strand at 473.408 kb on - strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.571 kb on + strand at 473.571 kb on + strand at 473.571 kb on + strand at 473.571 kb on + strand at 473.572 kb on - strand at 473.572 kb on - strand at 473.572 kb on - strand at 473.584 kb on + strand, within AO356_02205 at 473.584 kb on + strand, within AO356_02205 at 473.686 kb on + strand, within AO356_02205 at 473.687 kb on - strand, within AO356_02205 at 473.687 kb on - strand, within AO356_02205 at 473.857 kb on + strand, within AO356_02205 at 474.262 kb on + strand at 474.263 kb on - strand at 474.263 kb on - strand at 474.275 kb on - strand at 474.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 10 mM remove 472,090 + -0.5 472,090 + -0.6 472,161 - +2.1 472,161 - +0.2 472,169 + -2.4 472,170 - +1.2 472,172 + -3.3 472,173 - +1.9 472,173 - -0.7 472,173 - +0.2 472,173 - +0.2 472,173 - -0.6 472,173 - -1.0 472,173 - +0.3 472,175 - +0.7 472,175 - +1.1 472,175 - +0.3 472,175 - +1.0 472,221 - +0.6 472,283 - +0.7 472,294 + -0.2 472,294 + +0.4 472,361 + -1.1 472,491 + AO356_02195 0.29 +1.2 472,595 - AO356_02195 0.46 -0.8 472,718 + AO356_02195 0.65 +0.5 472,718 + AO356_02195 0.65 -0.6 472,719 - AO356_02195 0.66 +1.6 472,915 - +0.2 472,915 - +0.5 472,965 - +0.2 472,965 - +0.4 472,965 - +0.7 472,970 + -0.4 472,970 + +0.5 473,021 - -0.5 473,027 - +0.7 473,035 + +0.7 473,331 + +0.7 473,331 + -0.2 473,331 + -0.8 473,331 + +0.7 473,332 - +0.3 473,332 - +0.6 473,332 - +0.6 473,335 + -0.2 473,336 - +0.6 473,336 - +0.5 473,336 - -0.1 473,336 - -0.5 473,348 + +0.4 473,349 - -0.1 473,407 + +0.8 473,407 + -1.4 473,408 - +1.0 473,408 - +0.7 473,408 - -0.1 473,491 + -1.4 473,491 + -0.5 473,571 + +0.1 473,571 + -2.8 473,571 + -0.5 473,571 + +1.4 473,572 - -0.4 473,572 - -0.3 473,572 - +0.5 473,584 + AO356_02205 0.11 -0.8 473,584 + AO356_02205 0.11 +1.2 473,686 + AO356_02205 0.24 -0.1 473,687 - AO356_02205 0.24 -0.4 473,687 - AO356_02205 0.24 -0.0 473,857 + AO356_02205 0.44 -1.9 474,262 + -0.7 474,263 - +0.6 474,263 - -1.4 474,275 - +0.8 474,275 - +0.2
Or see this region's nucleotide sequence