Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1400 and Dshi_1401 are separated by 11 nucleotides Dshi_1401 and Dshi_1402 are separated by 12 nucleotides Dshi_1402 and Dshi_1403 are separated by 4 nucleotides
Dshi_1400: Dshi_1400 - ABC transporter related (RefSeq), at 1,453,619 to 1,454,374
_1400
Dshi_1401: Dshi_1401 - ABC transporter related (RefSeq), at 1,454,386 to 1,455,144
_1401
Dshi_1402: Dshi_1402 - inner-membrane translocator (RefSeq), at 1,455,157 to 1,456,365
_1402
Dshi_1403: Dshi_1403 - inner-membrane translocator (RefSeq), at 1,456,370 to 1,457,401
_1403
Position (kb)
1455
1456
1457 Strain fitness (log2 ratio)
-1
0
1
2 at 1454.195 kb on + strand, within Dshi_1400 at 1454.196 kb on + strand, within Dshi_1400 at 1454.224 kb on - strand, within Dshi_1400 at 1454.271 kb on + strand, within Dshi_1400 at 1454.354 kb on - strand at 1454.479 kb on - strand, within Dshi_1401 at 1454.616 kb on + strand, within Dshi_1401 at 1454.677 kb on - strand, within Dshi_1401 at 1454.816 kb on - strand, within Dshi_1401 at 1455.005 kb on - strand, within Dshi_1401 at 1455.010 kb on - strand, within Dshi_1401 at 1455.091 kb on + strand at 1455.147 kb on - strand at 1455.285 kb on + strand, within Dshi_1402 at 1455.404 kb on - strand, within Dshi_1402 at 1455.451 kb on + strand, within Dshi_1402 at 1455.459 kb on - strand, within Dshi_1402 at 1455.521 kb on + strand, within Dshi_1402 at 1455.582 kb on + strand, within Dshi_1402 at 1455.586 kb on + strand, within Dshi_1402 at 1455.911 kb on + strand, within Dshi_1402 at 1455.946 kb on + strand, within Dshi_1402 at 1455.946 kb on + strand, within Dshi_1402 at 1455.968 kb on + strand, within Dshi_1402 at 1456.163 kb on - strand, within Dshi_1402 at 1456.213 kb on - strand, within Dshi_1402 at 1456.270 kb on + strand at 1456.283 kb on + strand at 1456.301 kb on - strand at 1456.363 kb on + strand at 1456.375 kb on - strand at 1456.456 kb on + strand at 1456.560 kb on - strand, within Dshi_1403 at 1456.576 kb on + strand, within Dshi_1403 at 1456.576 kb on + strand, within Dshi_1403 at 1456.584 kb on - strand, within Dshi_1403 at 1456.606 kb on - strand, within Dshi_1403 at 1456.729 kb on - strand, within Dshi_1403 at 1456.764 kb on - strand, within Dshi_1403 at 1456.795 kb on - strand, within Dshi_1403 at 1456.997 kb on + strand, within Dshi_1403 at 1457.147 kb on + strand, within Dshi_1403 at 1457.215 kb on + strand, within Dshi_1403 at 1457.237 kb on - strand, within Dshi_1403 at 1457.302 kb on - strand at 1457.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,454,195 + Dshi_1400 0.76 -0.7 1,454,196 + Dshi_1400 0.76 +0.1 1,454,224 - Dshi_1400 0.80 -0.5 1,454,271 + Dshi_1400 0.86 -0.2 1,454,354 - +0.4 1,454,479 - Dshi_1401 0.12 -0.2 1,454,616 + Dshi_1401 0.30 -0.6 1,454,677 - Dshi_1401 0.38 +0.5 1,454,816 - Dshi_1401 0.57 +0.6 1,455,005 - Dshi_1401 0.82 -0.0 1,455,010 - Dshi_1401 0.82 +0.3 1,455,091 + +0.5 1,455,147 - -0.5 1,455,285 + Dshi_1402 0.11 -0.2 1,455,404 - Dshi_1402 0.20 -0.1 1,455,451 + Dshi_1402 0.24 +0.4 1,455,459 - Dshi_1402 0.25 +0.4 1,455,521 + Dshi_1402 0.30 -0.8 1,455,582 + Dshi_1402 0.35 -0.7 1,455,586 + Dshi_1402 0.35 -0.9 1,455,911 + Dshi_1402 0.62 +0.1 1,455,946 + Dshi_1402 0.65 +0.2 1,455,946 + Dshi_1402 0.65 -0.5 1,455,968 + Dshi_1402 0.67 +1.8 1,456,163 - Dshi_1402 0.83 +0.3 1,456,213 - Dshi_1402 0.87 +2.7 1,456,270 + -0.8 1,456,283 + -1.0 1,456,301 - -0.0 1,456,363 + -0.7 1,456,375 - -0.2 1,456,456 + +0.5 1,456,560 - Dshi_1403 0.18 -1.5 1,456,576 + Dshi_1403 0.20 -0.4 1,456,576 + Dshi_1403 0.20 -0.6 1,456,584 - Dshi_1403 0.21 +0.4 1,456,606 - Dshi_1403 0.23 +0.3 1,456,729 - Dshi_1403 0.35 +0.5 1,456,764 - Dshi_1403 0.38 -0.3 1,456,795 - Dshi_1403 0.41 -0.2 1,456,997 + Dshi_1403 0.61 -0.0 1,457,147 + Dshi_1403 0.75 +0.2 1,457,215 + Dshi_1403 0.82 -0.5 1,457,237 - Dshi_1403 0.84 -0.9 1,457,302 - -0.0 1,457,358 + +0.5
Or see this region's nucleotide sequence