Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0113

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0112 and Dshi_0113 are separated by 55 nucleotidesDshi_0113 and Dshi_0114 are separated by 86 nucleotides Dshi_0112: Dshi_0112 - AFG1-family ATPase (RefSeq), at 110,834 to 112,003 _0112 Dshi_0113: Dshi_0113 - Redoxin domain protein (RefSeq), at 112,059 to 112,541 _0113 Dshi_0114: Dshi_0114 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 112,628 to 113,833 _0114 Position (kb) 112 113Strain fitness (log2 ratio) -1 0 1 2at 111.120 kb on + strand, within Dshi_0112at 111.166 kb on + strand, within Dshi_0112at 111.395 kb on - strand, within Dshi_0112at 111.459 kb on + strand, within Dshi_0112at 111.525 kb on + strand, within Dshi_0112at 111.613 kb on - strand, within Dshi_0112at 111.614 kb on + strand, within Dshi_0112at 111.745 kb on + strand, within Dshi_0112at 111.750 kb on + strand, within Dshi_0112at 111.760 kb on + strand, within Dshi_0112at 111.837 kb on + strand, within Dshi_0112at 112.006 kb on - strandat 112.025 kb on + strandat 112.186 kb on - strand, within Dshi_0113at 112.288 kb on + strand, within Dshi_0113at 112.513 kb on + strandat 112.586 kb on + strandat 112.587 kb on - strandat 112.594 kb on - strandat 112.604 kb on - strandat 112.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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111,120 + Dshi_0112 0.24 -0.1
111,166 + Dshi_0112 0.28 +1.3
111,395 - Dshi_0112 0.48 -1.0
111,459 + Dshi_0112 0.53 +2.3
111,525 + Dshi_0112 0.59 -0.4
111,613 - Dshi_0112 0.67 -1.1
111,614 + Dshi_0112 0.67 +0.8
111,745 + Dshi_0112 0.78 +0.3
111,750 + Dshi_0112 0.78 +0.0
111,760 + Dshi_0112 0.79 -0.3
111,837 + Dshi_0112 0.86 -0.7
112,006 - +0.4
112,025 + -0.7
112,186 - Dshi_0113 0.26 -1.1
112,288 + Dshi_0113 0.47 -0.6
112,513 + +0.1
112,586 + -1.0
112,587 - +1.8
112,594 - +0.1
112,604 - +0.3
112,630 + +0.4

Or see this region's nucleotide sequence