Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15230

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS15225 and PFLU_RS15230 overlap by 4 nucleotidesPFLU_RS15230 and PFLU_RS15235 overlap by 14 nucleotidesPFLU_RS15235 and PFLU_RS15240 overlap by 4 nucleotides PFLU_RS15225: PFLU_RS15225 - AMP-binding protein, at 3,412,082 to 3,413,560 _RS15225 PFLU_RS15230: PFLU_RS15230 - iron-containing redox enzyme family protein, at 3,413,557 to 3,414,231 _RS15230 PFLU_RS15235: PFLU_RS15235 - SDR family oxidoreductase, at 3,414,218 to 3,415,027 _RS15235 PFLU_RS15240: PFLU_RS15240 - tetratricopeptide repeat protein, at 3,415,024 to 3,415,668 _RS15240 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3412.685 kb on + strand, within PFLU_RS15225at 3412.686 kb on - strand, within PFLU_RS15225at 3412.708 kb on - strand, within PFLU_RS15225at 3412.986 kb on + strand, within PFLU_RS15225at 3412.987 kb on - strand, within PFLU_RS15225at 3413.106 kb on - strand, within PFLU_RS15225at 3413.222 kb on + strand, within PFLU_RS15225at 3413.222 kb on + strand, within PFLU_RS15225at 3413.408 kb on + strand, within PFLU_RS15225at 3413.408 kb on + strand, within PFLU_RS15225at 3413.418 kb on + strandat 3413.418 kb on + strandat 3413.418 kb on + strandat 3413.418 kb on + strandat 3413.419 kb on - strandat 3413.419 kb on - strandat 3413.419 kb on - strandat 3413.501 kb on - strandat 3413.501 kb on - strandat 3413.665 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.689 kb on + strand, within PFLU_RS15230at 3413.690 kb on - strand, within PFLU_RS15230at 3413.690 kb on - strand, within PFLU_RS15230at 3413.690 kb on - strand, within PFLU_RS15230at 3413.692 kb on + strand, within PFLU_RS15230at 3413.692 kb on + strand, within PFLU_RS15230at 3413.692 kb on + strand, within PFLU_RS15230at 3413.693 kb on - strand, within PFLU_RS15230at 3413.693 kb on - strand, within PFLU_RS15230at 3413.706 kb on + strand, within PFLU_RS15230at 3413.706 kb on + strand, within PFLU_RS15230at 3413.706 kb on + strand, within PFLU_RS15230at 3413.782 kb on + strand, within PFLU_RS15230at 3413.782 kb on + strand, within PFLU_RS15230at 3413.783 kb on - strand, within PFLU_RS15230at 3413.797 kb on + strand, within PFLU_RS15230at 3413.798 kb on - strand, within PFLU_RS15230at 3413.902 kb on + strand, within PFLU_RS15230at 3413.902 kb on + strand, within PFLU_RS15230at 3413.902 kb on + strand, within PFLU_RS15230at 3413.902 kb on + strand, within PFLU_RS15230at 3413.903 kb on - strand, within PFLU_RS15230at 3413.903 kb on - strand, within PFLU_RS15230at 3413.908 kb on + strand, within PFLU_RS15230at 3413.908 kb on + strand, within PFLU_RS15230at 3413.909 kb on - strand, within PFLU_RS15230at 3413.909 kb on - strand, within PFLU_RS15230at 3413.909 kb on - strand, within PFLU_RS15230at 3414.047 kb on - strand, within PFLU_RS15230at 3414.047 kb on - strand, within PFLU_RS15230at 3414.047 kb on - strand, within PFLU_RS15230at 3414.163 kb on + strand, within PFLU_RS15230at 3414.163 kb on + strand, within PFLU_RS15230at 3414.172 kb on + strandat 3414.172 kb on + strandat 3414.173 kb on - strandat 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.632 kb on + strand, within PFLU_RS15235at 3414.633 kb on - strand, within PFLU_RS15235at 3414.633 kb on - strand, within PFLU_RS15235at 3414.633 kb on - strand, within PFLU_RS15235at 3414.633 kb on - strand, within PFLU_RS15235at 3414.657 kb on - strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.665 kb on + strand, within PFLU_RS15235at 3414.666 kb on - strand, within PFLU_RS15235at 3414.666 kb on - strand, within PFLU_RS15235at 3414.666 kb on - strand, within PFLU_RS15235at 3414.666 kb on - strand, within PFLU_RS15235at 3414.746 kb on + strand, within PFLU_RS15235at 3414.746 kb on + strand, within PFLU_RS15235at 3414.746 kb on + strand, within PFLU_RS15235at 3414.747 kb on - strand, within PFLU_RS15235at 3414.747 kb on - strand, within PFLU_RS15235at 3414.747 kb on - strand, within PFLU_RS15235at 3414.747 kb on - strand, within PFLU_RS15235at 3414.747 kb on - strand, within PFLU_RS15235at 3414.890 kb on + strand, within PFLU_RS15235at 3414.891 kb on - strand, within PFLU_RS15235at 3414.891 kb on - strand, within PFLU_RS15235at 3414.960 kb on + strandat 3414.960 kb on + strandat 3414.961 kb on - strandat 3414.961 kb on - strandat 3414.961 kb on - strandat 3414.964 kb on + strandat 3414.964 kb on + strandat 3414.981 kb on + strandat 3415.141 kb on + strand, within PFLU_RS15240at 3415.141 kb on + strand, within PFLU_RS15240at 3415.141 kb on + strand, within PFLU_RS15240at 3415.141 kb on + strand, within PFLU_RS15240at 3415.142 kb on - strand, within PFLU_RS15240at 3415.142 kb on - strand, within PFLU_RS15240at 3415.142 kb on - strand, within PFLU_RS15240at 3415.165 kb on - strand, within PFLU_RS15240

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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3,412,685 + PFLU_RS15225 0.41 +3.6
3,412,686 - PFLU_RS15225 0.41 +0.3
3,412,708 - PFLU_RS15225 0.42 -1.7
3,412,986 + PFLU_RS15225 0.61 -0.6
3,412,987 - PFLU_RS15225 0.61 +1.5
3,413,106 - PFLU_RS15225 0.69 -0.4
3,413,222 + PFLU_RS15225 0.77 -1.2
3,413,222 + PFLU_RS15225 0.77 -0.2
3,413,408 + PFLU_RS15225 0.90 +1.5
3,413,408 + PFLU_RS15225 0.90 +0.1
3,413,418 + +2.9
3,413,418 + -1.0
3,413,418 + -0.5
3,413,418 + -0.9
3,413,419 - -1.3
3,413,419 - +0.9
3,413,419 - +0.9
3,413,501 - +1.9
3,413,501 - +0.2
3,413,665 + PFLU_RS15230 0.16 +0.3
3,413,689 + PFLU_RS15230 0.20 +1.6
3,413,689 + PFLU_RS15230 0.20 +1.7
3,413,689 + PFLU_RS15230 0.20 +2.3
3,413,689 + PFLU_RS15230 0.20 -0.5
3,413,689 + PFLU_RS15230 0.20 +1.6
3,413,689 + PFLU_RS15230 0.20 -0.8
3,413,690 - PFLU_RS15230 0.20 -1.0
3,413,690 - PFLU_RS15230 0.20 -1.0
3,413,690 - PFLU_RS15230 0.20 -1.2
3,413,692 + PFLU_RS15230 0.20 +1.2
3,413,692 + PFLU_RS15230 0.20 +0.6
3,413,692 + PFLU_RS15230 0.20 +1.1
3,413,693 - PFLU_RS15230 0.20 +1.0
3,413,693 - PFLU_RS15230 0.20 -0.5
3,413,706 + PFLU_RS15230 0.22 -1.0
3,413,706 + PFLU_RS15230 0.22 -2.0
3,413,706 + PFLU_RS15230 0.22 +1.6
3,413,782 + PFLU_RS15230 0.33 +0.2
3,413,782 + PFLU_RS15230 0.33 +0.9
3,413,783 - PFLU_RS15230 0.33 -3.1
3,413,797 + PFLU_RS15230 0.36 -0.2
3,413,798 - PFLU_RS15230 0.36 +1.0
3,413,902 + PFLU_RS15230 0.51 +0.1
3,413,902 + PFLU_RS15230 0.51 -0.3
3,413,902 + PFLU_RS15230 0.51 -1.0
3,413,902 + PFLU_RS15230 0.51 +0.5
3,413,903 - PFLU_RS15230 0.51 -0.9
3,413,903 - PFLU_RS15230 0.51 -0.0
3,413,908 + PFLU_RS15230 0.52 -0.4
3,413,908 + PFLU_RS15230 0.52 -1.0
3,413,909 - PFLU_RS15230 0.52 -0.7
3,413,909 - PFLU_RS15230 0.52 -2.0
3,413,909 - PFLU_RS15230 0.52 +1.4
3,414,047 - PFLU_RS15230 0.73 +1.2
3,414,047 - PFLU_RS15230 0.73 -0.4
3,414,047 - PFLU_RS15230 0.73 +1.3
3,414,163 + PFLU_RS15230 0.90 -0.2
3,414,163 + PFLU_RS15230 0.90 -1.2
3,414,172 + -2.6
3,414,172 + -1.4
3,414,173 - -0.2
3,414,632 + PFLU_RS15235 0.51 +1.6
3,414,632 + PFLU_RS15235 0.51 +2.1
3,414,632 + PFLU_RS15235 0.51 -0.1
3,414,632 + PFLU_RS15235 0.51 -0.4
3,414,632 + PFLU_RS15235 0.51 -1.7
3,414,632 + PFLU_RS15235 0.51 -1.8
3,414,632 + PFLU_RS15235 0.51 +1.8
3,414,633 - PFLU_RS15235 0.51 -0.0
3,414,633 - PFLU_RS15235 0.51 +1.7
3,414,633 - PFLU_RS15235 0.51 +0.6
3,414,633 - PFLU_RS15235 0.51 -0.2
3,414,657 - PFLU_RS15235 0.54 +1.0
3,414,665 + PFLU_RS15235 0.55 -0.9
3,414,665 + PFLU_RS15235 0.55 -1.1
3,414,665 + PFLU_RS15235 0.55 +0.6
3,414,665 + PFLU_RS15235 0.55 -1.7
3,414,665 + PFLU_RS15235 0.55 +0.8
3,414,665 + PFLU_RS15235 0.55 -0.5
3,414,666 - PFLU_RS15235 0.55 -0.0
3,414,666 - PFLU_RS15235 0.55 +1.0
3,414,666 - PFLU_RS15235 0.55 +0.7
3,414,666 - PFLU_RS15235 0.55 +1.1
3,414,746 + PFLU_RS15235 0.65 +0.8
3,414,746 + PFLU_RS15235 0.65 -0.7
3,414,746 + PFLU_RS15235 0.65 -1.0
3,414,747 - PFLU_RS15235 0.65 -0.6
3,414,747 - PFLU_RS15235 0.65 -2.6
3,414,747 - PFLU_RS15235 0.65 +0.9
3,414,747 - PFLU_RS15235 0.65 -0.0
3,414,747 - PFLU_RS15235 0.65 +0.8
3,414,890 + PFLU_RS15235 0.83 +0.8
3,414,891 - PFLU_RS15235 0.83 +0.2
3,414,891 - PFLU_RS15235 0.83 +0.4
3,414,960 + +1.7
3,414,960 + -0.4
3,414,961 - +0.8
3,414,961 - +0.6
3,414,961 - -2.0
3,414,964 + +1.1
3,414,964 + +4.0
3,414,981 + +1.6
3,415,141 + PFLU_RS15240 0.18 +0.1
3,415,141 + PFLU_RS15240 0.18 -0.5
3,415,141 + PFLU_RS15240 0.18 +0.9
3,415,141 + PFLU_RS15240 0.18 -1.7
3,415,142 - PFLU_RS15240 0.18 -0.0
3,415,142 - PFLU_RS15240 0.18 +1.3
3,415,142 - PFLU_RS15240 0.18 +0.8
3,415,165 - PFLU_RS15240 0.22 -0.6

Or see this region's nucleotide sequence