Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12550

Experiment: Growth at pH6 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH6 and (C) D-Glucose
2,833,291	+				-0.4
2,833,291	+				-1.1
2,833,291	+				+0.7
2,833,292	-				-0.8
2,833,309	+				-0.1
2,833,309	+				+0.3
2,833,309	+				-0.6
2,833,321	+				-0.7
2,833,322	-				-0.3
2,833,327	+				-1.0
2,833,361	+		PFLU_RS12545	0.10	-0.8
2,833,362	-		PFLU_RS12545	0.10	+2.6
2,833,362	-		PFLU_RS12545	0.10	+0.4
2,833,362	-		PFLU_RS12545	0.10	+0.9
2,833,784	+		PFLU_RS12545	0.57	+1.0
2,833,784	+		PFLU_RS12545	0.57	+0.5
2,833,784	+		PFLU_RS12545	0.57	+0.3
2,833,784	+		PFLU_RS12545	0.57	-0.4
2,833,784	+		PFLU_RS12545	0.57	-0.6
2,833,785	-		PFLU_RS12545	0.58	-0.2
2,833,785	-		PFLU_RS12545	0.58	+0.5
2,833,794	+		PFLU_RS12545	0.59	+0.4
2,833,794	+		PFLU_RS12545	0.59	-0.2
2,833,794	+		PFLU_RS12545	0.59	+0.9
2,833,795	-		PFLU_RS12545	0.59	-1.0
2,833,795	-		PFLU_RS12545	0.59	-0.4
2,833,843	+		PFLU_RS12545	0.64	-0.4
2,833,843	+		PFLU_RS12545	0.64	+0.5
2,833,843	+		PFLU_RS12545	0.64	+0.1
2,833,844	-		PFLU_RS12545	0.64	+0.5
2,833,871	+		PFLU_RS12545	0.67	+3.1
2,833,871	+		PFLU_RS12545	0.67	+0.8
2,833,871	+		PFLU_RS12545	0.67	-0.5
2,833,872	-		PFLU_RS12545	0.67	+0.2
2,833,872	-		PFLU_RS12545	0.67	+0.5
2,833,872	-		PFLU_RS12545	0.67	+0.6
2,833,998	+		PFLU_RS12545	0.81	-0.8
2,833,999	-		PFLU_RS12545	0.82	+1.4
2,833,999	-		PFLU_RS12545	0.82	-1.0
2,834,211	-				+0.3
2,834,240	+				-0.2
2,834,240	+				-0.5
2,834,240	+				-0.1
2,834,240	+				-1.0
2,834,240	+				+2.6
2,834,240	+				-0.0
2,834,240	+				-0.1
2,834,240	+				-0.8
2,834,240	+				-0.2
2,834,240	+				-0.1
2,834,240	+				-0.9
2,834,240	+				+0.1
2,834,241	-				+2.2
2,834,241	-				+1.4
2,834,241	-				+1.1
2,834,241	-				-0.8
2,834,241	-				-0.4
2,834,241	-				+0.1
2,834,241	-				+1.2
2,834,241	-				+0.0
2,834,241	-				-1.0
2,834,241	-				-0.6
2,834,241	-				+0.4
2,834,241	-				-2.2
2,834,241	-				-0.4
2,834,350	+				-0.8
2,834,350	+				+1.1
2,834,350	+				-0.5
2,834,350	+				+1.8
2,834,350	+				-0.9
2,834,350	+				-1.4
2,834,350	+				-0.8
2,834,350	+				-0.2
2,834,350	+				-0.4
2,834,350	+				+1.2
2,834,350	+				+0.8
2,834,351	-				+0.8
2,834,351	-				+1.7
2,834,351	-				+1.7
2,834,351	-				-1.2
2,834,351	-				-0.2
2,834,351	-				+1.5
2,834,420	+		PFLU_RS12550	0.13	+0.3
2,834,441	+		PFLU_RS12550	0.15	+0.6
2,834,441	+		PFLU_RS12550	0.15	-0.4
2,834,441	+		PFLU_RS12550	0.15	-0.2
2,834,441	+		PFLU_RS12550	0.15	+0.1
2,834,441	+		PFLU_RS12550	0.15	+0.7
2,834,442	-		PFLU_RS12550	0.15	+1.0
2,834,442	-		PFLU_RS12550	0.15	+0.3
2,834,442	-		PFLU_RS12550	0.15	-1.1
2,834,442	-		PFLU_RS12550	0.15	-1.2
2,834,442	-		PFLU_RS12550	0.15	+0.8
2,834,442	-		PFLU_RS12550	0.15	+0.8
2,834,489	+		PFLU_RS12550	0.20	+1.0
2,834,489	+		PFLU_RS12550	0.20	-0.8
2,834,490	-		PFLU_RS12550	0.20	+1.3
2,834,490	-		PFLU_RS12550	0.20	+0.8
2,834,490	-		PFLU_RS12550	0.20	+1.2
2,834,624	+		PFLU_RS12550	0.33	+0.3
2,834,624	+		PFLU_RS12550	0.33	-1.9
2,834,624	+		PFLU_RS12550	0.33	+0.5
2,834,625	-		PFLU_RS12550	0.33	+0.6
2,834,711	-		PFLU_RS12550	0.42	+0.5
2,834,726	+		PFLU_RS12550	0.43	+1.8
2,834,727	-		PFLU_RS12550	0.43	+1.1
2,834,747	+		PFLU_RS12550	0.45	+1.2
2,834,747	+		PFLU_RS12550	0.45	-1.5
2,834,747	+		PFLU_RS12550	0.45	-0.7
2,834,747	+		PFLU_RS12550	0.45	+1.3
2,834,748	-		PFLU_RS12550	0.45	+0.0
2,834,909	+		PFLU_RS12550	0.61	+0.8
2,834,910	-		PFLU_RS12550	0.62	+0.2
2,834,996	+		PFLU_RS12550	0.70	+1.8
2,834,997	-		PFLU_RS12550	0.70	-0.4
2,835,326	+				+0.2
2,835,326	+				-1.4
2,835,326	+				-1.5
2,835,326	+				-0.4
2,835,326	+				-2.2
2,835,326	+				+0.2
2,835,326	+				-0.1
2,835,326	+				-0.8
2,835,326	+				+1.1
2,835,326	+				+1.9
2,835,326	+				-0.8
2,835,326	+				-0.5
2,835,326	+				-0.4
2,835,327	-				+1.6
2,835,327	-				-3.0
2,835,327	-				+1.4
2,835,327	-				-1.2
2,835,327	-				+0.5
2,835,327	-				+0.2
2,835,327	-				-1.2
2,835,327	-				+1.5
2,835,327	-				-0.8
2,835,327	-				-0.3
2,835,327	-				+1.2
2,835,333	+				-1.2
2,835,334	-				-2.7
2,835,640	+		PFLU_RS12555	0.41	+0.2
2,835,640	+		PFLU_RS12555	0.41	+0.8
2,835,641	-		PFLU_RS12555	0.41	-0.4
2,835,682	+		PFLU_RS12555	0.46	-2.0
2,835,682	+		PFLU_RS12555	0.46	-1.0
2,835,682	+		PFLU_RS12555	0.46	-0.2
2,835,682	+		PFLU_RS12555	0.46	-1.9
2,835,682	+		PFLU_RS12555	0.46	+0.5
2,835,682	+		PFLU_RS12555	0.46	-0.5
2,835,682	+		PFLU_RS12555	0.46	-0.8
2,835,682	+		PFLU_RS12555	0.46	+0.6
2,835,683	-		PFLU_RS12555	0.46	-0.2
2,835,683	-		PFLU_RS12555	0.46	-0.7
2,835,683	-		PFLU_RS12555	0.46	+0.8
2,835,683	-		PFLU_RS12555	0.46	+0.2
2,835,683	-		PFLU_RS12555	0.46	+0.0
2,835,772	+		PFLU_RS12555	0.58	-1.5
2,835,772	+		PFLU_RS12555	0.58	-0.8
2,835,772	+		PFLU_RS12555	0.58	-1.0
2,835,773	-		PFLU_RS12555	0.58	+0.8
2,835,773	-		PFLU_RS12555	0.58	+0.5
2,836,027	+		PFLU_RS12555	0.89	+0.5
2,836,027	+		PFLU_RS12555	0.89	-0.3
2,836,027	+		PFLU_RS12555	0.89	-1.1
2,836,027	+		PFLU_RS12555	0.89	-0.1
2,836,027	+		PFLU_RS12555	0.89	-0.8
2,836,027	+		PFLU_RS12555	0.89	-0.8
2,836,027	+		PFLU_RS12555	0.89	-1.4
2,836,027	+		PFLU_RS12555	0.89	-1.0
2,836,028	-		PFLU_RS12555	0.90	+0.5
2,836,028	-		PFLU_RS12555	0.90	+1.6
2,836,028	-		PFLU_RS12555	0.90	+0.7
2,836,028	-		PFLU_RS12555	0.90	-0.9
2,836,028	-		PFLU_RS12555	0.90	-0.2
2,836,028	-		PFLU_RS12555	0.90	+1.8
2,836,028	-		PFLU_RS12555	0.90	+0.8
2,836,028	-		PFLU_RS12555	0.90	+1.9
2,836,126	-				-0.6
2,836,132	+				-1.5
2,836,132	+				+1.4
2,836,132	+				+0.8
2,836,132	+				+0.1
2,836,133	-				+0.0
2,836,133	-				+1.0
2,836,133	-				+1.4
2,836,135	+				+0.3
2,836,135	+				-1.3
2,836,135	+				-0.8
2,836,135	+				-0.2
2,836,135	+				+0.8
2,836,135	+				-0.2
2,836,135	+				+0.4
2,836,136	-				-0.6