Experiment: H2 deepwell acetate and casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04255 and MMP_RS04260 are separated by 21 nucleotides MMP_RS04260 and MMP_RS04265 are separated by 10 nucleotides MMP_RS04265 and MMP_RS04270 are separated by 13 nucleotides
MMP_RS04255: MMP_RS04255 - coenzyme F420 hydrogenase subunit beta, at 811,639 to 812,487
_RS04255
MMP_RS04260: MMP_RS04260 - coenzyme F420 hydrogenase subunit gamma, at 812,509 to 813,237
_RS04260
MMP_RS04265: MMP_RS04265 - coenzyme F420-reducing hydrogenase FrhD protein, at 813,248 to 813,748
_RS04265
MMP_RS04270: MMP_RS04270 - coenzyme F420 hydrogenase subunit alpha, at 813,762 to 814,994
_RS04270
Position (kb) 813
814 Strain fitness (log2 ratio) -1
0
1 at 812.374 kb on - strand, within MMP_RS04255 at 812.457 kb on - strand at 812.457 kb on - strand at 812.458 kb on + strand at 812.466 kb on - strand at 812.468 kb on - strand at 812.468 kb on - strand at 812.487 kb on - strand at 812.488 kb on + strand at 812.506 kb on - strand at 812.507 kb on + strand at 812.527 kb on - strand at 812.528 kb on + strand at 812.632 kb on - strand, within MMP_RS04260 at 812.699 kb on + strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 813.010 kb on - strand, within MMP_RS04260 at 813.133 kb on - strand, within MMP_RS04260 at 813.569 kb on - strand, within MMP_RS04265 at 813.570 kb on + strand, within MMP_RS04265 at 813.696 kb on + strand, within MMP_RS04265 at 813.764 kb on + strand at 813.768 kb on - strand at 813.769 kb on + strand at 813.813 kb on - strand at 813.943 kb on - strand, within MMP_RS04270 at 813.947 kb on - strand, within MMP_RS04270 at 814.144 kb on + strand, within MMP_RS04270 at 814.225 kb on - strand, within MMP_RS04270 at 814.238 kb on - strand, within MMP_RS04270 at 814.252 kb on + strand, within MMP_RS04270 at 814.280 kb on + strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.618 kb on - strand, within MMP_RS04270 at 814.641 kb on - strand, within MMP_RS04270 at 814.659 kb on - strand, within MMP_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate and casamino FREE remove 812,374 - MMP_RS04255 0.87 -0.4 812,457 - -0.0 812,457 - +0.1 812,458 + +0.4 812,466 - +0.8 812,468 - +0.7 812,468 - -1.2 812,487 - +0.9 812,488 + +1.7 812,506 - +0.5 812,507 + -0.3 812,527 - +0.9 812,528 + +0.9 812,632 - MMP_RS04260 0.17 +0.6 812,699 + MMP_RS04260 0.26 +1.0 812,913 - MMP_RS04260 0.55 +0.4 812,913 - MMP_RS04260 0.55 +1.1 813,010 - MMP_RS04260 0.69 +0.1 813,133 - MMP_RS04260 0.86 -0.1 813,569 - MMP_RS04265 0.64 -0.3 813,570 + MMP_RS04265 0.64 -0.2 813,696 + MMP_RS04265 0.89 +0.8 813,764 + +0.4 813,768 - +1.4 813,769 + +1.3 813,813 - +1.1 813,943 - MMP_RS04270 0.15 +1.7 813,947 - MMP_RS04270 0.15 +0.5 814,144 + MMP_RS04270 0.31 +0.4 814,225 - MMP_RS04270 0.38 -0.6 814,238 - MMP_RS04270 0.39 -0.5 814,252 + MMP_RS04270 0.40 -0.8 814,280 + MMP_RS04270 0.42 -0.2 814,568 - MMP_RS04270 0.65 +1.2 814,568 - MMP_RS04270 0.65 -0.1 814,618 - MMP_RS04270 0.69 -0.7 814,641 - MMP_RS04270 0.71 -0.3 814,659 - MMP_RS04270 0.73 +0.8
Or see this region's nucleotide sequence