Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09235

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,711,297	+				+0.6
1,711,297	+				-0.8
1,711,321	-				-1.4
1,711,344	-				+0.2
1,711,345	+				+0.1
1,711,352	+				+0.3
1,711,352	+				-2.1
1,711,357	+				+1.0
1,711,372	+				-0.5
1,711,486	-		MMJJ_RS09225	0.43	+0.1
1,711,488	-		MMJJ_RS09225	0.44	+0.3
1,711,488	-		MMJJ_RS09225	0.44	+0.3
1,711,488	-		MMJJ_RS09225	0.44	+0.5
1,711,488	-		MMJJ_RS09225	0.44	-1.1
1,711,488	-		MMJJ_RS09225	0.44	-2.3
1,711,488	-		MMJJ_RS09225	0.44	+0.7
1,711,488	-		MMJJ_RS09225	0.44	+0.2
1,711,488	-		MMJJ_RS09225	0.44	+1.7
1,711,489	+		MMJJ_RS09225	0.44	+1.1
1,711,489	+		MMJJ_RS09225	0.44	+0.3
1,711,497	+		MMJJ_RS09225	0.47	-0.2
1,711,521	+		MMJJ_RS09225	0.56	+0.7
1,711,521	+		MMJJ_RS09225	0.56	+1.3
1,711,521	+		MMJJ_RS09225	0.56	-0.3
1,711,521	+		MMJJ_RS09225	0.56	-0.1
1,711,588	-		MMJJ_RS09225	0.82	+0.4
1,711,589	+		MMJJ_RS09225	0.82	-0.8
1,711,634	+				+0.3
1,711,634	+				-0.7
1,711,663	-				-0.1
1,711,669	+				+0.6
1,711,679	-				+0.8
1,711,679	-				-0.2
1,711,680	+				-0.5
1,711,701	-				+0.6
1,711,701	-				-0.2
1,711,702	+				+0.7
1,711,706	+				-0.3
1,711,778	-				+0.5
1,711,789	-				+1.1
1,711,790	+				+0.2
1,711,790	+				+0.4
1,711,875	-		MMJJ_RS09230	0.19	+0.1
1,711,876	+		MMJJ_RS09230	0.19	+0.3
1,711,876	+		MMJJ_RS09230	0.19	-0.4
1,711,945	-		MMJJ_RS09230	0.35	-0.0
1,711,985	-		MMJJ_RS09230	0.45	+1.9
1,712,028	-		MMJJ_RS09230	0.55	-0.6
1,712,042	-		MMJJ_RS09230	0.58	+0.6
1,712,094	+		MMJJ_RS09230	0.70	-1.3
1,712,094	+		MMJJ_RS09230	0.70	+1.0
1,712,229	-				+0.2
1,712,230	+				-2.1
1,712,259	-				+1.1
1,712,260	+				-0.1
1,712,260	+				+1.4
1,712,260	+				+0.7
1,712,329	-		MMJJ_RS09235	0.16	+0.3
1,712,408	+		MMJJ_RS09235	0.56	+0.2
1,712,409	-		MMJJ_RS09235	0.56	+1.0
1,712,471	-		MMJJ_RS09235	0.87	+0.6
1,712,472	+		MMJJ_RS09235	0.88	+0.4
1,712,536	-				-0.6
1,712,537	+				+0.3
1,712,623	+				-0.3
1,712,623	+				+1.5
1,712,637	-				+0.9
1,712,638	+				+0.2
1,712,654	-				-0.7
1,712,716	-		MMJJ_RS09240	0.16	-0.8
1,712,717	+		MMJJ_RS09240	0.17	-0.5
1,712,717	+		MMJJ_RS09240	0.17	+0.6
1,712,720	+		MMJJ_RS09240	0.17	+0.3
1,712,753	-		MMJJ_RS09240	0.24	+0.2
1,712,755	-		MMJJ_RS09240	0.24	+0.8
1,712,755	-		MMJJ_RS09240	0.24	+0.5
1,712,755	-		MMJJ_RS09240	0.24	+0.6
1,712,755	-		MMJJ_RS09240	0.24	-1.5
1,712,755	-		MMJJ_RS09240	0.24	-0.1
1,712,755	-		MMJJ_RS09240	0.24	+0.1
1,712,755	-		MMJJ_RS09240	0.24	-1.9
1,712,755	-		MMJJ_RS09240	0.24	-3.0
1,712,755	-		MMJJ_RS09240	0.24	-0.0
1,712,755	-		MMJJ_RS09240	0.24	+0.2
1,712,755	-		MMJJ_RS09240	0.24	+2.5
1,712,755	-		MMJJ_RS09240	0.24	+0.9
1,712,755	-		MMJJ_RS09240	0.24	+1.6
1,712,756	+		MMJJ_RS09240	0.24	+1.8
1,712,756	+		MMJJ_RS09240	0.24	-0.2
1,712,756	+		MMJJ_RS09240	0.24	-1.0
1,712,756	+		MMJJ_RS09240	0.24	-0.0
1,712,756	+		MMJJ_RS09240	0.24	+0.5
1,712,756	+		MMJJ_RS09240	0.24	+1.6
1,712,756	+		MMJJ_RS09240	0.24	+0.9
1,712,756	+		MMJJ_RS09240	0.24	+0.2
1,712,756	+		MMJJ_RS09240	0.24	-2.3
1,712,756	+		MMJJ_RS09240	0.24	+2.2
1,712,756	+		MMJJ_RS09240	0.24	-0.1
1,712,757	-		MMJJ_RS09240	0.24	+1.3
1,712,757	-		MMJJ_RS09240	0.24	-0.2
1,712,757	-		MMJJ_RS09240	0.24	+0.7
1,712,757	-		MMJJ_RS09240	0.24	+0.6
1,712,757	-		MMJJ_RS09240	0.24	+0.4
1,712,757	-		MMJJ_RS09240	0.24	-0.0
1,712,757	-		MMJJ_RS09240	0.24	+0.5
1,712,757	-		MMJJ_RS09240	0.24	-1.8
1,712,757	-		MMJJ_RS09240	0.24	+0.8
1,712,757	-		MMJJ_RS09240	0.24	-0.6
1,712,757	-		MMJJ_RS09240	0.24	+0.0
1,712,757	-		MMJJ_RS09240	0.24	-0.1
1,712,757	-		MMJJ_RS09240	0.24	+3.5
1,712,757	-		MMJJ_RS09240	0.24	-0.2
1,712,757	-		MMJJ_RS09240	0.24	+0.5
1,712,757	-		MMJJ_RS09240	0.24	+1.0
1,712,757	-		MMJJ_RS09240	0.24	+0.2
1,712,757	-		MMJJ_RS09240	0.24	+1.0
1,712,757	-		MMJJ_RS09240	0.24	-0.3
1,712,757	-		MMJJ_RS09240	0.24	-1.1
1,712,757	-		MMJJ_RS09240	0.24	-0.6
1,712,757	-		MMJJ_RS09240	0.24	+0.7
1,712,758	+		MMJJ_RS09240	0.25	+0.2
1,712,758	+		MMJJ_RS09240	0.25	+1.2
1,712,758	+		MMJJ_RS09240	0.25	+0.1
1,712,758	+		MMJJ_RS09240	0.25	-1.0
1,712,758	+		MMJJ_RS09240	0.25	-0.7
1,712,758	+		MMJJ_RS09240	0.25	-3.1
1,712,758	+		MMJJ_RS09240	0.25	-0.8
1,712,758	+		MMJJ_RS09240	0.25	+0.1
1,712,758	+		MMJJ_RS09240	0.25	-0.2
1,712,758	+		MMJJ_RS09240	0.25	-0.7
1,712,758	+		MMJJ_RS09240	0.25	-0.9
1,712,758	+		MMJJ_RS09240	0.25	+0.5
1,712,758	+		MMJJ_RS09240	0.25	-1.5
1,712,758	+		MMJJ_RS09240	0.25	+0.8
1,712,758	+		MMJJ_RS09240	0.25	+0.9
1,712,758	+		MMJJ_RS09240	0.25	+0.3
1,712,758	+		MMJJ_RS09240	0.25	+0.1
1,712,758	+		MMJJ_RS09240	0.25	-1.2
1,712,758	+		MMJJ_RS09240	0.25	+0.3
1,712,759	-		MMJJ_RS09240	0.25	-2.0
1,712,759	-		MMJJ_RS09240	0.25	-0.2
1,712,759	-		MMJJ_RS09240	0.25	-0.8
1,712,759	-		MMJJ_RS09240	0.25	-0.4
1,712,759	-		MMJJ_RS09240	0.25	-1.3
1,712,759	-		MMJJ_RS09240	0.25	+1.1
1,712,759	-		MMJJ_RS09240	0.25	-0.4
1,712,759	-		MMJJ_RS09240	0.25	+0.2
1,712,759	-		MMJJ_RS09240	0.25	+0.1
1,712,759	-				-0.8
1,712,759	-		MMJJ_RS09240	0.25	+0.6
1,712,760	+		MMJJ_RS09240	0.25	+0.4
1,712,760	+		MMJJ_RS09240	0.25	+0.5
1,712,760	+		MMJJ_RS09240	0.25	+0.3
1,712,760	+		MMJJ_RS09240	0.25	+0.1
1,712,760	+		MMJJ_RS09240	0.25	+0.6
1,712,760	+		MMJJ_RS09240	0.25	+0.9
1,712,760	+		MMJJ_RS09240	0.25	-2.1
1,712,760	+		MMJJ_RS09240	0.25	+0.5
1,712,760	+		MMJJ_RS09240	0.25	+0.9
1,712,763	-		MMJJ_RS09240	0.25	+1.4
1,712,763	-		MMJJ_RS09240	0.25	+0.3
1,712,764	+		MMJJ_RS09240	0.26	-0.5
1,712,764	+		MMJJ_RS09240	0.26	+0.6
1,712,764	+		MMJJ_RS09240	0.26	-0.3
1,712,764	+		MMJJ_RS09240	0.26	-0.8
1,712,764	+		MMJJ_RS09240	0.26	+0.0
1,712,781	+		MMJJ_RS09240	0.29	-0.8
1,712,782	-		MMJJ_RS09240	0.29	-0.4
1,712,838	-		MMJJ_RS09240	0.40	-2.1
1,712,867	-		MMJJ_RS09240	0.45	-1.5
1,712,868	+		MMJJ_RS09240	0.46	-0.2
1,712,868	+		MMJJ_RS09240	0.46	+0.1
1,712,908	-		MMJJ_RS09240	0.53	+0.0
1,712,909	+		MMJJ_RS09240	0.53	+0.5
1,712,909	+		MMJJ_RS09240	0.53	-0.1
1,712,911	-		MMJJ_RS09240	0.54	-0.6
1,712,912	+		MMJJ_RS09240	0.54	+0.2
1,712,916	+		MMJJ_RS09240	0.55	+0.4
1,712,916	+		MMJJ_RS09240	0.55	-0.3
1,713,035	-		MMJJ_RS09240	0.78	-0.6
1,713,056	-		MMJJ_RS09240	0.82	+0.7
1,713,056	-		MMJJ_RS09240	0.82	-0.3
1,713,056	-		MMJJ_RS09240	0.82	+0.5
1,713,056	-		MMJJ_RS09240	0.82	+0.2
1,713,057	+		MMJJ_RS09240	0.82	-0.1
1,713,078	+				+1.5
1,713,082	-		MMJJ_RS09240	0.87	-1.1
1,713,083	+		MMJJ_RS09240	0.87	-1.6
1,713,086	-		MMJJ_RS09240	0.87	+1.1
1,713,087	+		MMJJ_RS09240	0.88	-0.0
1,713,093	-		MMJJ_RS09240	0.89	+1.3
1,713,094	+				-1.1
1,713,094	+		MMJJ_RS09240	0.89	+0.5
1,713,097	+		MMJJ_RS09240	0.89	-0.3
1,713,097	+		MMJJ_RS09240	0.89	+0.7
1,713,135	+				-1.9
1,713,172	+				+0.5
1,713,206	-		MMJJ_RS09380	0.15	+0.4
1,713,293	-		MMJJ_RS09380	0.70	-0.1
1,713,296	+		MMJJ_RS09380	0.72	+0.9
1,713,315	+		MMJJ_RS09380	0.84	+0.6
1,713,327	-				-2.0
1,713,327	-				+0.5
1,713,327	-				-0.3
1,713,335	+				+0.8
1,713,335	+				-0.8
1,713,354	-				+0.1
1,713,359	-				+0.9
1,713,359	-				-2.2
1,713,371	-				+0.7
1,713,373	-				-0.4
1,713,399	-				+0.2
1,713,400	+				-1.3
1,713,403	-				+0.2
1,713,404	+				+0.5
1,713,406	+				+0.7
1,713,406	+				-0.0
1,713,414	-				+0.6
1,713,440	+				-0.7
1,713,443	+				+0.7
1,713,446	-				+0.3
1,713,447	+				-0.4
1,713,467	+				-0.9
1,713,472	-				+1.5
1,713,476	-				+0.6
1,713,476	-				+0.5
1,713,476	-				+0.8
1,713,476	-				-0.7
1,713,477	+				-1.0
1,713,477	+				-0.2
1,713,477	+				+1.6
1,713,477	+				-0.1
1,713,479	-				+1.0
1,713,479	-				-0.2
1,713,479	-				+0.7
1,713,480	+				-1.0
1,713,480	+				-0.4