Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08675

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,594,934	-		MMJJ_RS08665	0.43	+3.9
1,594,934	-		MMJJ_RS08665	0.43	-0.1
1,594,935	+		MMJJ_RS08665	0.43	+0.1
1,594,938	-		MMJJ_RS08665	0.44	-1.3
1,594,938	-		MMJJ_RS08665	0.44	-0.2
1,594,938	-				-1.4
1,594,938	-		MMJJ_RS08665	0.44	+0.1
1,594,938	-		MMJJ_RS08665	0.44	+0.0
1,594,938	-		MMJJ_RS08665	0.44	-1.4
1,594,938	-		MMJJ_RS08665	0.44	-0.7
1,594,938	-		MMJJ_RS08665	0.44	+0.1
1,594,938	-		MMJJ_RS08665	0.44	+0.6
1,594,939	+		MMJJ_RS08665	0.44	-1.0
1,594,939	+		MMJJ_RS08665	0.44	-0.6
1,594,939	+		MMJJ_RS08665	0.44	-0.5
1,594,939	+		MMJJ_RS08665	0.44	+1.2
1,594,939	+		MMJJ_RS08665	0.44	-0.3
1,594,939	+		MMJJ_RS08665	0.44	+1.5
1,594,940	-		MMJJ_RS08665	0.45	+0.3
1,594,940	-		MMJJ_RS08665	0.45	+1.1
1,594,940	-		MMJJ_RS08665	0.45	+2.7
1,594,941	+		MMJJ_RS08665	0.45	+1.4
1,594,941	+		MMJJ_RS08665	0.45	+1.6
1,594,941	+		MMJJ_RS08665	0.45	-0.1
1,594,943	-		MMJJ_RS08665	0.45	-0.2
1,594,943	-		MMJJ_RS08665	0.45	+0.5
1,594,944	+		MMJJ_RS08665	0.46	-0.2
1,594,950	-		MMJJ_RS08665	0.47	+0.5
1,594,989	+		MMJJ_RS08665	0.57	+1.0
1,594,998	-		MMJJ_RS08665	0.59	+2.1
1,595,004	-		MMJJ_RS08665	0.60	-0.3
1,595,005	+		MMJJ_RS08665	0.61	+0.7
1,595,006	-		MMJJ_RS08665	0.61	+0.8
1,595,006	-		MMJJ_RS08665	0.61	-0.1
1,595,007	+		MMJJ_RS08665	0.61	+0.7
1,595,025	-		MMJJ_RS08665	0.65	-0.3
1,595,025	-		MMJJ_RS08665	0.65	+0.8
1,595,025	-		MMJJ_RS08665	0.65	-0.1
1,595,026	+		MMJJ_RS08665	0.66	+0.2
1,595,026	+		MMJJ_RS08665	0.66	-0.1
1,595,026	+		MMJJ_RS08665	0.66	+0.1
1,595,026	+		MMJJ_RS08665	0.66	-0.3
1,595,026	+		MMJJ_RS08665	0.66	-0.6
1,595,026	+		MMJJ_RS08665	0.66	-1.1
1,595,065	-		MMJJ_RS08665	0.75	-0.4
1,595,087	-		MMJJ_RS08665	0.81	-0.8
1,595,111	-		MMJJ_RS08665	0.87	-0.1
1,595,112	+		MMJJ_RS08665	0.87	+0.3
1,595,116	-		MMJJ_RS08665	0.88	-0.1
1,595,116	-		MMJJ_RS08665	0.88	-1.4
1,595,154	-				-0.3
1,595,155	+				+0.5
1,595,163	-				+0.2
1,595,196	+				+0.2
1,595,239	-		MMJJ_RS08670	0.11	+0.7
1,595,240	+		MMJJ_RS08670	0.11	-0.4
1,595,240	+		MMJJ_RS08670	0.11	-0.2
1,595,251	-		MMJJ_RS08670	0.13	+0.2
1,595,251	-		MMJJ_RS08670	0.13	-0.0
1,595,252	+		MMJJ_RS08670	0.13	-3.6
1,595,261	+		MMJJ_RS08670	0.14	-0.0
1,595,292	-		MMJJ_RS08670	0.19	-0.1
1,595,293	+		MMJJ_RS08670	0.19	+0.0
1,595,354	+		MMJJ_RS08670	0.27	-1.6
1,595,362	-		MMJJ_RS08670	0.28	+0.3
1,595,375	-		MMJJ_RS08670	0.30	-0.6
1,595,376	+		MMJJ_RS08670	0.30	+2.9
1,595,376	+		MMJJ_RS08670	0.30	-0.9
1,595,376	+		MMJJ_RS08670	0.30	+0.9
1,595,382	-		MMJJ_RS08670	0.31	-0.5
1,595,382	-		MMJJ_RS08670	0.31	-0.0
1,595,383	+		MMJJ_RS08670	0.31	-0.1
1,595,383	+		MMJJ_RS08670	0.31	+0.3
1,595,384	-		MMJJ_RS08670	0.32	-0.9
1,595,384	-		MMJJ_RS08670	0.32	+1.2
1,595,385	+		MMJJ_RS08670	0.32	-0.3
1,595,385	+		MMJJ_RS08670	0.32	+0.2
1,595,385	+		MMJJ_RS08670	0.32	+0.5
1,595,398	-		MMJJ_RS08670	0.34	+0.8
1,595,402	+		MMJJ_RS08670	0.34	-0.4
1,595,413	+		MMJJ_RS08670	0.36	-0.3
1,595,495	+		MMJJ_RS08670	0.47	+1.5
1,595,545	-		MMJJ_RS08670	0.55	+1.3
1,595,545	-		MMJJ_RS08670	0.55	+0.7
1,595,546	+		MMJJ_RS08670	0.55	-0.8
1,595,576	+		MMJJ_RS08670	0.59	-1.5
1,595,601	+		MMJJ_RS08670	0.63	+0.1
1,595,609	+		MMJJ_RS08670	0.64	-1.0
1,595,617	-		MMJJ_RS08670	0.65	+0.4
1,595,620	-		MMJJ_RS08670	0.65	-1.3
1,595,621	+		MMJJ_RS08670	0.65	-0.3
1,595,630	-		MMJJ_RS08670	0.67	-0.1
1,595,662	-		MMJJ_RS08670	0.71	-0.4
1,595,663	+		MMJJ_RS08670	0.71	+1.4
1,595,752	-		MMJJ_RS08670	0.84	-0.1
1,595,752	-		MMJJ_RS08670	0.84	+0.8
1,595,752	-		MMJJ_RS08670	0.84	-0.0
1,595,752	-		MMJJ_RS08670	0.84	-0.8
1,595,753	+		MMJJ_RS08670	0.84	-1.5
1,595,758	-		MMJJ_RS08670	0.85	+0.7
1,595,809	-				-0.2
1,595,813	+				+2.5
1,595,818	-				+1.8
1,595,819	+				-0.8
1,595,918	-				-0.1
1,595,918	-				-0.4
1,595,918	-				+0.1
1,595,919	+				+0.9
1,595,919	+				-0.8
1,595,919	+				+0.5
1,595,919	+				-1.1
1,595,942	-				+0.8
1,595,943	+				+0.0
1,595,943	+				-0.5
1,595,943	+				-2.3
1,596,032	-		MMJJ_RS08675	0.15	+1.4
1,596,061	+		MMJJ_RS08675	0.19	+1.8
1,596,077	+		MMJJ_RS08675	0.21	-0.6
1,596,169	-		MMJJ_RS08675	0.33	+1.1
1,596,170	+		MMJJ_RS08675	0.33	+0.7
1,596,172	-		MMJJ_RS08675	0.33	-0.5
1,596,172	-		MMJJ_RS08675	0.33	+0.7
1,596,173	+		MMJJ_RS08675	0.33	+0.1
1,596,238	-		MMJJ_RS08675	0.42	+0.1
1,596,371	-		MMJJ_RS08675	0.60	+2.6
1,596,371	-		MMJJ_RS08675	0.60	-0.0
1,596,375	-		MMJJ_RS08675	0.60	-0.6
1,596,376	+		MMJJ_RS08675	0.60	+0.4
1,596,479	+		MMJJ_RS08675	0.74	+0.3
1,596,508	-		MMJJ_RS08675	0.78	+0.3
1,596,509	+		MMJJ_RS08675	0.78	-1.0
1,596,535	-		MMJJ_RS08675	0.81	+0.0
1,596,535	-		MMJJ_RS08675	0.81	-0.1
1,596,607	-				-0.1
1,596,608	+				+0.3
1,596,693	+				-1.1
1,596,696	-				-0.0
1,596,696	-				+0.3
1,596,696	-				+0.1
1,596,697	+				+0.1
1,596,719	+				+1.3
1,596,742	-				+0.2
1,596,742	-				-0.2
1,596,746	-				+1.2
1,596,750	+				+0.3
1,596,786	-		MMJJ_RS08680	0.10	+0.7
1,596,797	+		MMJJ_RS08680	0.12	-0.7
1,596,797	+		MMJJ_RS08680	0.12	-2.2
1,596,812	+		MMJJ_RS08680	0.13	-1.5
1,596,834	-		MMJJ_RS08680	0.16	+0.8
1,596,834	-		MMJJ_RS08680	0.16	-0.2
1,596,835	+		MMJJ_RS08680	0.16	+0.9
1,596,835	+		MMJJ_RS08680	0.16	+1.0
1,596,835	+		MMJJ_RS08680	0.16	+0.9
1,596,836	-		MMJJ_RS08680	0.16	-0.1
1,596,837	+		MMJJ_RS08680	0.16	-0.3
1,596,841	-		MMJJ_RS08680	0.17	-2.1
1,596,842	+		MMJJ_RS08680	0.17	-0.4
1,596,849	+		MMJJ_RS08680	0.18	-0.8
1,596,863	+		MMJJ_RS08680	0.19	+0.4
1,596,952	-		MMJJ_RS08680	0.30	-0.8
1,596,992	-		MMJJ_RS08680	0.34	+1.0
1,596,992	-		MMJJ_RS08680	0.34	-2.3
1,597,046	+		MMJJ_RS08680	0.40	+0.7
1,597,046	+		MMJJ_RS08680	0.40	+0.6
1,597,092	+		MMJJ_RS08680	0.46	+0.1
1,597,093	-		MMJJ_RS08680	0.46	-1.2
1,597,093	-		MMJJ_RS08680	0.46	-1.1
1,597,094	+		MMJJ_RS08680	0.46	-0.4
1,597,094	+		MMJJ_RS08680	0.46	+0.7
1,597,120	-		MMJJ_RS08680	0.49	+0.0
1,597,120	-		MMJJ_RS08680	0.49	+0.6
1,597,120	-		MMJJ_RS08680	0.49	-1.1
1,597,121	+		MMJJ_RS08680	0.49	-0.8
1,597,121	+		MMJJ_RS08680	0.49	+2.3
1,597,121	+		MMJJ_RS08680	0.49	+0.4
1,597,229	+		MMJJ_RS08680	0.62	+0.7
1,597,242	+		MMJJ_RS08680	0.63	+0.2
1,597,246	-		MMJJ_RS08680	0.64	+0.6
1,597,272	-		MMJJ_RS08680	0.67	-0.5
1,597,272	-		MMJJ_RS08680	0.67	-0.7
1,597,272	-		MMJJ_RS08680	0.67	-2.1
1,597,273	+		MMJJ_RS08680	0.67	+0.1
1,597,273	+		MMJJ_RS08680	0.67	+1.6
1,597,273	+		MMJJ_RS08680	0.67	-0.8
1,597,274	-		MMJJ_RS08680	0.67	-2.9
1,597,274	-		MMJJ_RS08680	0.67	+2.1
1,597,274	-		MMJJ_RS08680	0.67	-0.5
1,597,274	-		MMJJ_RS08680	0.67	+0.8
1,597,275	+		MMJJ_RS08680	0.67	-0.5
1,597,275	+		MMJJ_RS08680	0.67	-1.6
1,597,275	+		MMJJ_RS08680	0.67	+1.3
1,597,275	+		MMJJ_RS08680	0.67	-1.7
1,597,304	-		MMJJ_RS08680	0.70	+0.2
1,597,304	-		MMJJ_RS08680	0.70	+1.3
1,597,305	+		MMJJ_RS08680	0.70	-0.7
1,597,308	+		MMJJ_RS08680	0.71	-2.5
1,597,308	+		MMJJ_RS08680	0.71	+1.1
1,597,325	-		MMJJ_RS08680	0.73	-0.7
1,597,326	+		MMJJ_RS08680	0.73	-0.7
1,597,326	+		MMJJ_RS08680	0.73	+0.4
1,597,326	+		MMJJ_RS08680	0.73	-0.7
1,597,326	+		MMJJ_RS08680	0.73	+0.2
1,597,326	+		MMJJ_RS08680	0.73	+2.4
1,597,458	-		MMJJ_RS08680	0.88	-2.3
1,597,487	-				-0.4
1,597,487	-				-1.0
1,597,521	+				+0.3
1,597,521	+				+0.3
1,597,555	-				+0.5
1,597,556	+				-0.4
1,597,607	+				+1.0
1,597,607	+				+0.0
1,597,609	+				-0.3
1,597,617	+				+0.7
1,597,620	+				-0.7
1,597,620	+				-1.2
1,597,640	-				-1.0
1,597,650	+				+0.3
1,597,675	+		MMJJ_RS08685	0.12	-0.3