Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06680

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,230,870	-				+1.7
1,230,870	-				+1.4
1,230,871	+				-0.1
1,230,873	-				-0.1
1,230,874	+				+1.3
1,230,934	-				+0.5
1,230,946	+		MMJJ_RS06675	0.11	+0.0
1,230,976	+		MMJJ_RS06675	0.14	+0.4
1,231,008	-		MMJJ_RS06675	0.17	+0.4
1,231,011	-		MMJJ_RS06675	0.17	+0.1
1,231,012	+		MMJJ_RS06675	0.17	-0.3
1,231,029	-		MMJJ_RS06675	0.19	+0.7
1,231,096	-		MMJJ_RS06675	0.26	+0.0
1,231,097	+				+0.6
1,231,137	-		MMJJ_RS06675	0.30	+0.8
1,231,188	-		MMJJ_RS06675	0.35	+1.8
1,231,188	-		MMJJ_RS06675	0.35	+1.0
1,231,188	-		MMJJ_RS06675	0.35	+1.6
1,231,189	+		MMJJ_RS06675	0.35	+0.4
1,231,251	-		MMJJ_RS06675	0.41	+0.9
1,231,251	-		MMJJ_RS06675	0.41	-0.6
1,231,254	+		MMJJ_RS06675	0.42	+1.1
1,231,310	-		MMJJ_RS06675	0.47	+1.8
1,231,318	-		MMJJ_RS06675	0.48	+1.4
1,231,318	-		MMJJ_RS06675	0.48	-3.1
1,231,318	-		MMJJ_RS06675	0.48	+1.6
1,231,333	-		MMJJ_RS06675	0.50	+0.8
1,231,352	-		MMJJ_RS06675	0.51	-0.8
1,231,353	+				-0.7
1,231,392	+		MMJJ_RS06675	0.55	-0.7
1,231,396	+		MMJJ_RS06675	0.56	+0.7
1,231,396	+		MMJJ_RS06675	0.56	+0.4
1,231,418	-		MMJJ_RS06675	0.58	+0.7
1,231,418	-		MMJJ_RS06675	0.58	+0.1
1,231,418	-		MMJJ_RS06675	0.58	+0.6
1,231,419	+		MMJJ_RS06675	0.58	+1.2
1,231,419	+		MMJJ_RS06675	0.58	-0.4
1,231,419	+		MMJJ_RS06675	0.58	-2.8
1,231,472	-		MMJJ_RS06675	0.63	-0.2
1,231,504	+		MMJJ_RS06675	0.67	+1.1
1,231,601	-		MMJJ_RS06675	0.76	+0.4
1,231,601	-		MMJJ_RS06675	0.76	-1.0
1,231,602	+		MMJJ_RS06675	0.76	+0.5
1,231,603	-		MMJJ_RS06675	0.77	+1.1
1,231,603	-		MMJJ_RS06675	0.77	-0.3
1,231,603	-		MMJJ_RS06675	0.77	-0.3
1,231,603	-		MMJJ_RS06675	0.77	+1.6
1,231,604	+		MMJJ_RS06675	0.77	+0.8
1,231,604	+		MMJJ_RS06675	0.77	-0.9
1,231,604	+		MMJJ_RS06675	0.77	+0.4
1,231,604	+		MMJJ_RS06675	0.77	+2.0
1,231,604	+		MMJJ_RS06675	0.77	+2.4
1,231,643	+		MMJJ_RS06675	0.81	-0.6
1,231,676	-		MMJJ_RS06675	0.84	+0.1
1,231,676	-		MMJJ_RS06675	0.84	-1.2
1,231,677	+		MMJJ_RS06675	0.84	-0.3
1,231,677	+		MMJJ_RS06675	0.84	+1.5
1,231,684	-				-0.7
1,231,688	-		MMJJ_RS06675	0.85	+0.4
1,231,689	+		MMJJ_RS06675	0.85	-1.0
1,231,689	+		MMJJ_RS06675	0.85	-0.5
1,231,772	-				+0.6
1,231,846	-				+0.4
1,231,846	-				+0.7
1,231,857	+				+0.2
1,231,874	+				+1.2
1,231,876	-				+0.7
1,231,942	-		MMJJ_RS06680	0.15	+1.3
1,231,964	-		MMJJ_RS06680	0.19	+1.2
1,232,006	-		MMJJ_RS06680	0.26	+1.4
1,232,012	-		MMJJ_RS06680	0.27	-0.3
1,232,013	+		MMJJ_RS06680	0.27	+2.2
1,232,038	-		MMJJ_RS06680	0.31	+1.8
1,232,039	+		MMJJ_RS06680	0.31	+1.9
1,232,039	+		MMJJ_RS06680	0.31	+1.8
1,232,075	+		MMJJ_RS06680	0.37	-0.4
1,232,085	-		MMJJ_RS06680	0.39	-2.3
1,232,114	-		MMJJ_RS06680	0.44	-0.9
1,232,115	+		MMJJ_RS06680	0.44	-1.7
1,232,135	-		MMJJ_RS06680	0.47	+0.0
1,232,135	-		MMJJ_RS06680	0.47	-0.5
1,232,136	+		MMJJ_RS06680	0.47	+0.2
1,232,156	-		MMJJ_RS06680	0.51	+0.8
1,232,175	-		MMJJ_RS06680	0.54	+1.0
1,232,176	+		MMJJ_RS06680	0.54	+0.6
1,232,176	+		MMJJ_RS06680	0.54	+1.0
1,232,176	+		MMJJ_RS06680	0.54	+0.3
1,232,392	-				+0.7
1,232,394	-				+0.8
1,232,395	+				+0.3
1,232,484	-				-1.2
1,232,484	-				+1.4
1,232,485	+				+0.2
1,232,504	+				+1.6
1,232,508	-				-0.3
1,232,509	+				+1.9
1,232,555	-				+1.0
1,232,566	-				-1.8
1,232,566	-				+0.2
1,232,566	-				+0.8
1,232,566	-				+1.4
1,232,566	-				+0.8
1,232,567	+				+0.3
1,232,567	+				+0.2
1,232,585	+				+1.5
1,232,596	-				+1.3
1,232,596	-				-1.0
1,232,596	-				+0.7
1,232,615	-				+0.3
1,232,629	+				+1.6
1,232,680	-				+1.3
1,232,688	-		MMJJ_RS06685	0.10	+1.2
1,232,689	+		MMJJ_RS06685	0.10	+0.3
1,232,725	-		MMJJ_RS06685	0.13	-0.6
1,232,748	+		MMJJ_RS06685	0.14	-0.6
1,232,757	-		MMJJ_RS06685	0.15	+2.2
1,232,771	+		MMJJ_RS06685	0.16	-1.8
1,232,771	+		MMJJ_RS06685	0.16	+0.9
1,232,775	-		MMJJ_RS06685	0.16	+0.4
1,232,775	-		MMJJ_RS06685	0.16	+2.3
1,232,776	+		MMJJ_RS06685	0.17	-1.4
1,232,827	-		MMJJ_RS06685	0.20	-2.1
1,232,867	+		MMJJ_RS06685	0.23	+1.1
1,232,886	+		MMJJ_RS06685	0.25	+0.0
1,232,928	+		MMJJ_RS06685	0.28	+1.4
1,232,928	+		MMJJ_RS06685	0.28	-0.5
1,232,928	+		MMJJ_RS06685	0.28	+0.2
1,232,928	+		MMJJ_RS06685	0.28	+0.7
1,232,929	-		MMJJ_RS06685	0.28	-0.1
1,232,929	-		MMJJ_RS06685	0.28	+0.1
1,232,930	+		MMJJ_RS06685	0.28	+2.1
1,232,930	+		MMJJ_RS06685	0.28	-0.4
1,232,966	+		MMJJ_RS06685	0.31	+1.6
1,232,980	-		MMJJ_RS06685	0.32	+0.4
1,232,981	+		MMJJ_RS06685	0.32	-0.5
1,232,981	+		MMJJ_RS06685	0.32	+1.3
1,232,981	+		MMJJ_RS06685	0.32	+0.2
1,232,981	+		MMJJ_RS06685	0.32	-1.5
1,232,981	+		MMJJ_RS06685	0.32	+0.8
1,232,981	+		MMJJ_RS06685	0.32	+0.3
1,232,997	+		MMJJ_RS06685	0.33	-0.0
1,232,997	+		MMJJ_RS06685	0.33	+1.3
1,232,997	+		MMJJ_RS06685	0.33	-0.1
1,233,020	-		MMJJ_RS06685	0.35	+0.8
1,233,020	-		MMJJ_RS06685	0.35	+0.0
1,233,026	-		MMJJ_RS06685	0.35	+0.9
1,233,044	+		MMJJ_RS06685	0.37	+1.1
1,233,055	-		MMJJ_RS06685	0.37	+0.6
1,233,056	+		MMJJ_RS06685	0.37	+0.8
1,233,056	+		MMJJ_RS06685	0.37	-1.2
1,233,061	-		MMJJ_RS06685	0.38	+0.8
1,233,076	-		MMJJ_RS06685	0.39	+0.4
1,233,076	-		MMJJ_RS06685	0.39	+0.8
1,233,076	-		MMJJ_RS06685	0.39	+0.2
1,233,077	+		MMJJ_RS06685	0.39	+1.5
1,233,085	+		MMJJ_RS06685	0.40	+1.3
1,233,091	-		MMJJ_RS06685	0.40	+1.5
1,233,091	-		MMJJ_RS06685	0.40	+0.3
1,233,092	+		MMJJ_RS06685	0.40	+1.2
1,233,097	+		MMJJ_RS06685	0.40	-0.7
1,233,098	-		MMJJ_RS06685	0.41	+0.5
1,233,098	-		MMJJ_RS06685	0.41	-0.7
1,233,099	+		MMJJ_RS06685	0.41	+0.1
1,233,103	-		MMJJ_RS06685	0.41	+0.8
1,233,132	-		MMJJ_RS06685	0.43	-1.1
1,233,149	+		MMJJ_RS06685	0.44	+0.6
1,233,251	-		MMJJ_RS06685	0.52	-2.1
1,233,252	+		MMJJ_RS06685	0.52	+1.3
1,233,258	-		MMJJ_RS06685	0.52	-0.2
1,233,259	+		MMJJ_RS06685	0.53	+1.0
1,233,275	-		MMJJ_RS06685	0.54	+0.7
1,233,276	+		MMJJ_RS06685	0.54	+0.1
1,233,284	-		MMJJ_RS06685	0.54	-2.9
1,233,285	+		MMJJ_RS06685	0.55	+1.0
1,233,285	+		MMJJ_RS06685	0.55	-0.8
1,233,287	-		MMJJ_RS06685	0.55	-0.1
1,233,287	-		MMJJ_RS06685	0.55	+1.5
1,233,288	+		MMJJ_RS06685	0.55	+0.0
1,233,368	-		MMJJ_RS06685	0.61	+1.1
1,233,382	-		MMJJ_RS06685	0.62	-0.3
1,233,400	+		MMJJ_RS06685	0.63	-0.4
1,233,406	-		MMJJ_RS06685	0.64	-3.4
1,233,407	+		MMJJ_RS06685	0.64	+0.9
1,233,409	-		MMJJ_RS06685	0.64	+2.9
1,233,409	-		MMJJ_RS06685	0.64	+1.6
1,233,410	+		MMJJ_RS06685	0.64	+0.5
1,233,420	-		MMJJ_RS06685	0.65	+0.9
1,233,420	-		MMJJ_RS06685	0.65	+0.1
1,233,421	+		MMJJ_RS06685	0.65	+0.5
1,233,421	+		MMJJ_RS06685	0.65	+0.6
1,233,421	+		MMJJ_RS06685	0.65	-2.1
1,233,421	+		MMJJ_RS06685	0.65	+0.6
1,233,422	-		MMJJ_RS06685	0.65	+0.1
1,233,422	-		MMJJ_RS06685	0.65	-0.7
1,233,431	-		MMJJ_RS06685	0.65	+0.1
1,233,431	-		MMJJ_RS06685	0.65	-0.1
1,233,431	-		MMJJ_RS06685	0.65	-0.6
1,233,432	+		MMJJ_RS06685	0.65	-0.3
1,233,435	-		MMJJ_RS06685	0.66	+3.4